ID M20869; SV 1; linear; genomic RNA; STD; VRL; 3376 BP. XX AC M20869; XX DT 20-FEB-1989 (Rel. 18, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 2) XX DE Lymphocytic choriomeningitis virus envelope glycoprotein (GP-C) and DE nucleoprotein (NP) genes, complete cds. XX KW nucleoprotein; envelope protein. XX OS Mammarenavirus choriomeningitidis OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus. XX RN [1] RP 1-3376 RX DOI; 10.1016/0042-6822(88)90566-1. RX PUBMED; 3259346. RA Salvato M., Shimomaye E., Southern P., Oldstone M.B.A.; RT "Virus-lymphocyte interactions. IV. Molecular characterization of LCMV RT Armstrong (CTL+) small genomic segment and that of its variant, Clone 13 RT (CTL-)"; RL Virology 164(2):517-522(1988). XX DR MD5; 4ab0e896db2c1a8009af2023354bdaf1. DR EuropePMC; PMC112216; 10888638. DR EuropePMC; PMC136162; 11967329. DR EuropePMC; PMC1472124; 16698999. DR EuropePMC; PMC1472595; 16731928. DR EuropePMC; PMC1563716; 16840359. DR EuropePMC; PMC1866146; 17267481. DR EuropePMC; PMC1891391; 17371814. DR EuropePMC; PMC2398702; 11992578. DR EuropePMC; PMC2680969; 19478873. DR EuropePMC; PMC2730321; 12095441. DR EuropePMC; PMC2866409; 19861074. DR EuropePMC; PMC2937596; 20592086. DR EuropePMC; PMC3047505; 12504568. DR EuropePMC; PMC516395; 15367645. XX FH Key Location/Qualifiers FH FT source 1..3376 FT /organism="Mammarenavirus choriomeningitidis" FT /mol_type="genomic RNA" FT /db_xref="taxon:3052303" FT CDS 78..1574 FT /codon_start=1 FT /note="envelope glycoprotein" FT /db_xref="GOA:P09991" FT /db_xref="InterPro:IPR001535" FT /db_xref="PDB:5JWD" FT /db_xref="PDB:5JWE" FT /db_xref="UniProtKB/Swiss-Prot:P09991" FT /func_characterised="similar sequence" FT /protein_id="AAA46256.1" FT /translation="MGQIVTMFEALPHIIDEVINIVIIVLIVITGIKAVYNFATCGIFA FT LISFLLLAGRSCGMYGLKGPDIYKGVYQFKSVEFDMSHLNLTMPNACSANNSHHYISMG FT TSGLELTFTNDSIISHNFCNLTSAFNKKTFDHTLMSIVSSLHLSIRGNSNYKAVSCDFN FT NGITIQYNLTFSDRQSAQSQCRTFRGRVLDMFRTAFGGKYMRSGWGWTGSDGKTTWCSQ FT TSYQYLIIQNRTWENHCTYAGPFGMSRILLSQEKTKFFTRRLAGTFTWTLSDSSGVENP FT GGYCLTKWMILAAELKCFGNTAVAKCNVNHDAEFCDMLRLIDYNKAALSKFKEDVESAL FT HLFKTTVNSLISDQLLMRNHLRDLMGVPYCNYSKFWYLEHAKTGETSVPKCWLVTNGSY FT LNETHFSDQIEQEADNMITEMLRKDYIKRQGSTPLALMDLLMFSTSAYLVSIFLHLVKI FT PTHRHIKGGSCPKPHRLTNKGICSCGAFKVPGVKTVWKRR" FT variation 856 FT /note="t in ARM 53b; c in ARM 53b Clone 13" FT variation 1298 FT /note="t in ARM 53b; c in ARM 53b Clone 13" FT CDS complement(1639..3315) FT /codon_start=1 FT /note="nucleoprotein" FT /db_xref="GOA:P09992" FT /db_xref="InterPro:IPR000229" FT /db_xref="InterPro:IPR035083" FT /db_xref="InterPro:IPR035084" FT /db_xref="InterPro:IPR038115" FT /db_xref="PDB:4O6H" FT /db_xref="PDB:4O6I" FT /db_xref="UniProtKB/Swiss-Prot:P09992" FT /func_characterised="identical sequence" FT /protein_id="AAA46257.1" FT /translation="MSLSKEVKSFQWTQALRRELQSFTSDVKAAVIKDATNLLNGLDFS FT EVSNVQRIMRKEKRDDKDLQRLRSLNQTVHSLVDLKSTSKKNVLKVGRLSAEELMSLAA FT DLEKLKAKIMRSERPQASGVYMGNLTTQQLDQRSQILQIVGMRKPQQGASGVVRVWDVK FT DSSLLNNQFGTMPSLTMACMAKQSQTPLNDVVQALTDLGLLYTVKYPNLNDLERLKDKH FT PVLGVITEQQSSINISGYNFSLGAAVKAGAALLDGGNMLESILIKPSNSEDLLKAVLGA FT KRKLNMFVSDQVGDRNPYENILYKVCLSGEGWPYIACRTSIVGRAWENTTIDLTSEKPA FT VNSPRPAPGAAGPPQVGLSYSQTMLLKDLMGGIDPNAPTWIDIEGRFNDPVEIAIFQPQ FT NGQFIHFYREPVDQKQFKQDSKYSHGMDLADLFNAQPGLTSSVIGALPQGMVLSCQGSD FT DIRKLLDSQNRKDIKLIDVEMTREASREYEDKVWDKYGWLCKMHTGIVRDKKKKEITPH FT CALMDCIIFESASKARLPDLKTVHNILPHDLIFRGPNVVTL" XX SQ Sequence 3376 BP; 868 A; 809 C; 748 G; 951 T; 0 other; cgcaccgggg atcctaggct ttttggattg cgctttcctc tagatcaact gggtgtcagg 60 ccctatccta cagaaggatg ggtcagattg tgacaatgtt tgaggctctg cctcacatca 120 tcgatgaggt gatcaacatt gtcattattg tgcttatcgt gatcacgggt atcaaggctg 180 tctacaattt tgccacctgt gggatattcg cattgatcag tttcctactt ctggctggca 240 ggtcctgtgg catgtacggt cttaagggac ccgacattta caaaggagtt taccaattta 300 agtcagtgga gtttgatatg tcacatctga acctgaccat gcccaacgca tgttcagcca 360 acaactccca ccattacatc agtatgggga cttctggact agaattgacc ttcaccaatg 420 attccatcat cagtcacaac ttttgcaatc tgacctctgc cttcaacaaa aagacctttg 480 accacacact catgagtata gtttcgagcc tacacctcag tatcagaggg aactccaact 540 ataaggcagt atcctgcgac ttcaacaatg gcataaccat ccaatacaac ttgacattct 600 cagatcgaca aagtgctcag agccagtgta gaaccttcag aggtagagtc ctagatatgt 660 ttagaactgc cttcgggggg aaatacatga ggagtggctg gggctggaca ggctcagatg 720 gcaagaccac ctggtgtagc cagacgagtt accaatacct gattatacaa aatagaacct 780 gggaaaacca ctgcacatat gcaggtcctt ttgggatgtc caggattctc ctttcccaag 840 agaagactaa gttcttcact aggagactag cgggcacatt cacctggact ttgtcagact 900 cttcaggggt ggagaatcca ggtggttatt gcctgaccaa atggatgatt cttgctgcag 960 agcttaagtg tttcgggaac acagcagttg cgaaatgcaa tgtaaatcat gatgccgaat 1020 tctgtgacat gctgcgacta attgactaca acaaggctgc tttgagtaag ttcaaagagg 1080 acgtagaatc tgccttgcac ttattcaaaa caacagtgaa ttctttgatt tcagatcaac 1140 tactgatgag gaaccacttg agagatctga tgggggtgcc atattgcaat tactcaaagt 1200 tttggtacct agaacatgca aagaccggcg aaactagtgt ccccaagtgc tggcttgtca 1260 ccaatggttc ttacttaaat gagacccact tcagtgatca aatcgaacag gaagccgata 1320 acatgattac agagatgttg aggaaggatt acataaagag gcaggggagt acccccctag 1380 cattgatgga ccttctgatg ttttccacat ctgcatatct agtcagcatc ttcctgcacc 1440 ttgtcaaaat accaacacac aggcacataa aaggtggctc atgtccaaag ccacaccgat 1500 taaccaacaa aggaatttgt agttgtggtg catttaaggt gcctggtgta aaaaccgtct 1560 ggaaaagacg ctgaagaaca gcgcctccct gactctccac ctcgaaagag gtggagagtc 1620 agggaggccc agagggtctt agagtgtcac aacatttggg cctctaaaaa ttaggtcatg 1680 tggcagaatg ttgtgaacag ttttcagatc tgggagcctt gctttggagg cgctttcaaa 1740 aatgatgcag tccatgagtg cacagtgcgg ggtgatctct ttcttctttt tgtcccttac 1800 tattccagta tgcatcttac acaaccagcc atatttgtcc cacactttgt cttcatactc 1860 cctcgaagct tccctggtca tttcaacatc gataagctta atgtccttcc tattctgtga 1920 gtccagaagc tttctgatgt catcggagcc ttgacagctt agaaccatcc cctgcggaag 1980 agcacctata actgacgagg tcaacccggg ttgcgcattg aagaggtcgg caagatccat 2040 gccgtgtgag tacttggaat cttgcttgaa ttgtttttga tcaacgggtt ccctgtaaaa 2100 gtgtatgaac tgcccgttct gtggttggaa aattgctatt tccactggat cattaaatct 2160 accctcaatg tcaatccatg taggagcgtt ggggtcaatt cctcccatga ggtcttttaa 2220 aagcattgtc tggctgtagc ttaagcccac ctgaggtgga cctgctgctc caggcgctgg 2280 cctgggtgaa ttgactgcag gtttctcgct tgtgagatca attgttgtgt tttcccatgc 2340 tctccccaca atcgatgttc tacaagctat gtatggccat ccttcacctg aaaggcaaac 2400 tttatagagg atgttttcat aagggttcct gtccccaact tggtctgaaa caaacatgtt 2460 gagttttctc ttggccccga gaactgcctt caagaggtcc tcgctgttgc ttggcttgat 2520 caaaattgac tctaacatgt tacccccatc caacagggct gcccctgcct tcacggcagc 2580 accaagacta aagttatagc cagaaatgtt gatgctggac tgctgttcag tgatgacccc 2640 cagaactggg tgcttgtctt tcagcctttc aagatcatta agatttggat acttgactgt 2700 gtaaagcaag ccaaggtctg tgagcgcttg tacaacgtca ttgagcggag tctgtgactg 2760 tttggccata caagccatag ttagacttgg cattgtgcca aattgattgt tcaaaagtga 2820 tgagtctttc acatcccaaa ctcttaccac accacttgca ccctgctgag gctttctcat 2880 cccaactatc tgtaggatct gagatctttg gtctagttgc tgtgttgtta agttccccat 2940 atatacccct gaagcctggg gcctttcaga cctcatgatc ttggccttca gcttctcaag 3000 gtcagccgca agagacatca gttcttctgc actgagcctc cccactttca aaacattctt 3060 ctttgatgtt gactttaaat ccacaagaga atgtacagtc tggttgagac ttctgagtct 3120 ctgtaggtct ttgtcatctc tcttttcctt cctcatgatc ctctgaacat tgctgacctc 3180 agagaagtcc aacccattca gaaggttggt tgcatcctta atgacagcag ccttcacatc 3240 tgatgtgaag ctctgcaatt ctcttctcaa tgcttgcgtc cattggaagc tcttaacttc 3300 cttagacaag gacatcttgt tgctcaatgg tttctcaaga caaatgcgca atcaaatgcc 3360 taggatccac tgtgcg 3376 //