ID M18706; SV 1; linear; genomic DNA; STD; FUN; 5918 BP. XX AC M18706; XX DT 16-JUL-1988 (Rel. 16, Created) DT 14-FEB-2020 (Rel. 143, Last updated, Version 4) XX DE Saccharomyces cerevisiae (strain JB84A containing plasmid pNN162) Ty1-H3 DE gene, complete cds. XX KW long terminal repeat; Ty1 transposon B10. XX OS Saccharomyces cerevisiae (baker's yeast) OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; OC Saccharomycetales; Saccharomycetaceae; Saccharomyces. XX RN [1] RP 1-5918 RX PUBMED; 2837641. RA Boeke J.D., Eichinger D., Castrillon D., Fink G.R.; RT "The Saccharomyces cerevisiae genome contains functional and nonfunctional RT copies of transposon Ty1"; RL Mol. Cell. Biol. 8(4):1432-1442(1988). XX DR MD5; 415f29b9be83181414fdedc0910e63d2. DR EuropePMC; PMC110960; 11044130. DR EuropePMC; PMC126173; 12169639. DR EuropePMC; PMC1451165; 15911572. DR EuropePMC; PMC1676259; 17005648. DR EuropePMC; PMC1885833; 17550307. DR EuropePMC; PMC2717514; 14699263. DR EuropePMC; PMC2789563; 18279991. DR EuropePMC; PMC4196611; 25106655. DR EuropePMC; PMC4403431; 25609815. DR EuropePMC; PMC4551931; 26160887. DR EuropePMC; PMC4592464; 26298836. DR EuropePMC; PMC4599808; 26451601. DR EuropePMC; PMC525482; 15509791. DR EuropePMC; PMC5408680; 28394277. DR EuropePMC; PMC5714458; 29046400. XX CC Submitted in computer readable form by J.D.Boeke 25-MAR-1988. XX FH Key Location/Qualifiers FH FT source 1..5918 FT /organism="Saccharomyces cerevisiae" FT /strain="JB84A" FT /mol_type="genomic DNA" FT /note="contains ICTV exemplar Saccharomyces cerevisiae Ty1 FT virus" FT /db_xref="taxon:4932" FT repeat_region 1..334 FT /rpt_type=LONG_TERMINAL_REPEAT FT /note="5' long terminal repeat (delta domain)" FT mRNA 240..5880 FT /note="Ty-H3 mRNA (3' end +/- 3 bp)" FT gene 294..1616 FT /gene="TyA" FT CDS 294..1616 FT /codon_start=1 FT /gene="TyA" FT /note="putative" FT /db_xref="GOA:P08405" FT /db_xref="InterPro:IPR015820" FT /db_xref="SGD:-" FT /db_xref="UniProtKB/Swiss-Prot:P08405" FT /protein_id="AAA66937.1" FT /translation="MESQQLSQHSPNSHGSACASVTSKEVHTNQDPLDVSASKTEECEK FT ASTKANSQQTTTPASSAVPENPHHASPQPASVPPPQNGPYPQQCMMTQNQANPSGWSFY FT GHPSMIPYTPYQMSPMYFPPGPQSQFPQYPSSVGTPLSTPSPESGNTFTDSSSADSDMT FT STKKYVRPPPMLTSPNDFPNWVKTYIKFLQNSNLGGIIPTVNGKPVRQITDDELTFLYN FT TFQIFAPSQFLPTWVKDILSVDYTDIMKILSKSIEKMQSDTQEANDIVTLANLQYNGST FT PADAFETKVTNIIDRLNNNGIHINNKVACQLIMRGLSGEYKFLRYTRHRHLNMTVAELF FT LDIHAIYEEQQGSRNSKPNYRRNPSDEKNDSRSYTNTTKPKVIARNPQKTNNSKSKTAR FT AHNVSTSNNSPSTDNDSISKSTTEPIQLNNKHDLHLRPETY" FT gene 2095..5562 FT /gene="TyB" FT CDS 2095..5562 FT /codon_start=1 FT /gene="TyB" FT /note="Base 2095 is the position of the first start codon FT in the ORF; putative" FT /db_xref="GOA:Q07163" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR013103" FT /db_xref="InterPro:IPR015820" FT /db_xref="InterPro:IPR036397" FT /db_xref="InterPro:IPR039537" FT /db_xref="UniProtKB/Swiss-Prot:Q07163" FT /protein_id="AAA66938.1" FT /translation="MLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKS FT TKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPNSAPSYFISFTDETTKFRWVYPLH FT DRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTA FT DSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSARQH FT AGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTV FT DTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYHSFIASNEIQESNDLNIESDHDF FT QSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVDPNISESNILP FT SKKRSSTPQISNIESTGSGGMHKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENE FT TNHTNVPISSTGGTNNKTVPQISDQETEKRIIHRSPSIDASPPENNSSHNIVPIKTPTT FT VSEQNTEESIIADLPLPDLPPESPTEFPDPFKELPPINSRQTNSSLGGIGDSNAYTTIN FT SKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIKPIRTTLRYD FT EAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKKR FT DGTHKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLY FT ADIKEELYIRPPPHLGMNDKLIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEVRGWS FT CVFKNSQVTICLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGESDEEIQYDILGL FT EIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYK FT EKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDK FT QLIWHKNKPTEPDNKLVAISDASYGNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTST FT TEAEIHAISESVPLLNNLSYLIQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFG FT TKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNKWIH" FT repeat_region 5585..5918 FT /rpt_type=LONG_TERMINAL_REPEAT FT /note="3' long terminal repeat (delta domain)" XX SQ Sequence 5918 BP; 2111 A; 1270 C; 942 G; 1595 T; 0 other; tgttggaata gaaatcaact atcatctact aactagtatt tacattacta gtatattatc 60 atatacggtg ttagaagatg acgcaaatga tgagaaatag tcatctaaat tagtggaagc 120 tgaaacgcaa ggattgataa tgtaatagga tcaatgaata taaacatata aaatgatgat 180 aataatattt atagaattgt gtagaattgc agattccatt ttgaggattc ctatatcctc 240 gaggagaact tctagtatat tctgtatacc taatattata gcctttatca acaatggaat 300 cccaacaatt atctcaacat tcacccaatt ctcatggtag cgcctgtgct tcggttactt 360 ctaaggaagt ccacacaaat caagatccgt tagacgtttc agcttccaaa acagaagaat 420 gtgagaaggc ttccactaag gctaactctc aacagacaac aacacctgct tcatcagctg 480 ttccagagaa cccccatcat gcctctcctc aacctgcttc agtaccacct ccacagaatg 540 ggccgtaccc acagcagtgc atgatgaccc aaaaccaagc caatccatct ggttggtcat 600 tttacggaca cccatctatg attccgtata caccttatca aatgtcgcct atgtactttc 660 cacctgggcc acaatcacag tttccgcagt atccatcatc agttggaacg cctctgagca 720 ctccatcacc tgagtcaggt aatacattta ctgattcatc ctcagcggac tctgatatga 780 catccactaa aaaatatgtc agaccaccac caatgttaac ctcacctaat gactttccaa 840 attgggttaa aacatacatc aaatttttac aaaactcgaa tctcggtggt attattccga 900 cagtaaacgg aaaacccgta cgtcagatca ctgatgatga actcaccttc ttgtataaca 960 cttttcaaat atttgctccc tctcaattcc tacctacctg ggtcaaagac atcctatccg 1020 ttgattatac ggatatcatg aaaattcttt ccaaaagtat tgaaaaaatg caatctgata 1080 cccaagaggc aaacgacatt gtgaccctgg caaatttgca atataatggc agtacacctg 1140 cagatgcatt tgaaacaaaa gtcacaaaca ttatcgacag actgaacaat aatggcattc 1200 atatcaataa caaggtcgca tgccaattaa ttatgagagg tctatctggc gaatataaat 1260 ttttacgcta cacacgtcat cgacatctaa atatgacagt cgctgaactg ttcttagata 1320 tccatgctat ttatgaagaa caacagggat cgagaaacag taaacctaat tacaggagaa 1380 atccgagtga tgagaagaat gattctcgca gctatacgaa tacaaccaaa cccaaagtta 1440 tagctcggaa tcctcaaaaa acaaataatt cgaaatcgaa aacagccagg gctcacaatg 1500 tatccacatc taataactct cccagcacgg acaacgattc catcagtaaa tcaactactg 1560 aaccgattca attgaacaat aagcacgacc ttcatcttag gccagaaact tactgaatct 1620 acagtaaatc atactaatca ttctgatgat gaactccctg gacacctcct tctcgattca 1680 ggagcatcac gaacccttat aagatctgct catcacatac actcagcatc atctaatcct 1740 gacataaacg tagttgatgc tcaaaaaaga aatataccaa ttaacgctat tggtgaccta 1800 caatttcact tccaggacaa caccaaaaca tcaataaagg tattgcacac tcctaacata 1860 gcctatgact tactcagttt gaatgaattg gctgcagtag atatcacagc atgctttacc 1920 aaaaacgtct tagaacggtc tgacggcact gtacttgcac ctatcgtaaa atatggagac 1980 ttttactggg tatctaaaaa gtacttgctt ccatcaaata tctccgtacc caccatcaat 2040 aatgtccata caagtgaaag tacacgcaaa tatccttatc ctttcattca tcgaatgctt 2100 gcgcatgcca atgcacagac aattcgatac tcacttaaaa ataacaccat cacgtatttt 2160 aacgaatcag atgtcgactg gtctagtgct attgactatc aatgtcctga ttgtttaatc 2220 ggcaaaagca ccaaacacag acatatcaaa ggttcacgac taaaatacca aaattcatac 2280 gaaccctttc aatacctaca tactgacata tttggtccag ttcacaacct accaaatagt 2340 gcaccatcct atttcatctc atttactgat gagacaacaa aattccgttg ggtttatcca 2400 ttacacgacc gtcgcgagga ctctatcctc gatgttttta ctacgatact agcttttatt 2460 aaaaaccagt ttcaggccag tgtcttggtt atacaaatgg accgtggttc tgagtatact 2520 aacagaactc tccataaatt ccttgaaaaa aatggtataa ctccatgcta tacaaccaca 2580 gcggattccc gagcacatgg agtcgctgaa cggctaaacc gtaccttatt agatgactgc 2640 cgtactcaac tgcaatgtag tggtttaccg aaccatttat ggttctctgc aatcgaattt 2700 tctactattg tgagaaattc actagcttca cctaaaagca aaaaatctgc aagacaacat 2760 gctggcttgg caggacttga tatcagtact ttgttacctt tcggtcaacc tgttatcgtc 2820 aatgatcaca accctaactc caaaatacat cctcgtggca tcccaggcta cgctctacat 2880 ccgtctcgaa actcttatgg atatatcatc tatcttccat ccttaaagaa gacagtagat 2940 acaactaact atgttattct tcagggcaag gaatccagat tagatcaatt caattacgac 3000 gcactcactt tcgatgaaga cttaaaccgt ttaactgctt catatcattc gttcattgcg 3060 tcaaatgaga tccaagaatc caatgatctt aacatagaat ctgaccatga cttccaatcc 3120 gacattgaac tacatcctga gcaaccgaga aatgtccttt caaaagctgt gagtccaacc 3180 gattccacac ctccgtcaac tcatactgaa gattcgaaac gtgtttctaa aaccaatatt 3240 cgcgcaccca gagaagttga ccccaacata tctgaatcta atattcttcc atcaaagaag 3300 agatctagca ccccccaaat ttccaatatc gagagtaccg gttcgggtgg tatgcataaa 3360 ttaaatgttc ctttacttgc tcccatgtcc caatctaaca cacatgagtc gtcgcacgcc 3420 agtaaatcta aagatttcag acactcagac tcgtacagtg aaaatgagac taatcataca 3480 aacgtaccaa tatccagtac gggtggtacc aacaacaaaa ctgttccgca gataagtgac 3540 caagagactg agaaaaggat tatacaccgt tcaccttcaa tcgatgcttc tccaccggaa 3600 aataattcat cgcacaatat tgttcctatc aaaacgccaa ctactgtttc tgaacagaat 3660 accgaggaat ctatcatcgc tgatctccca ctccctgatc tacctccaga atctcctacc 3720 gaattccctg acccatttaa agaactccca ccgataaatt ctcgtcaaac taattccagt 3780 ttgggtggta ttggtgactc taatgcctat actactatca acagtaagaa aagatcatta 3840 gaagataatg aaactgaaat taaggtatca cgagacacat ggaatactaa gaatatgcgt 3900 agtttagaac ctccgagatc gaagaaacga attcacctga ttgcagctgt aaaagcagta 3960 aaatcaatca aaccaatacg gacaacctta cgatacgatg aggcaatcac ctataataaa 4020 gatattaaag aaaaagaaaa atatatcgag gcataccaca aagaagtcaa tcaactgttg 4080 aagatgaaaa cttgggacac tgacgaatat tatgacagaa aagaaataga ccctaaaaga 4140 gtaataaact caatgtttat cttcaacaag aaacgtgacg gtactcataa agctagattt 4200 gttgcaagag gtgatattca gcatcctgac acttacgact caggcatgca atccaatacc 4260 gtacatcact atgcattaat gacatccctg tcacttgcat tagacaataa ctactatatt 4320 acacaattag acatatcttc ggcatatttg tatgcagaca tcaaagaaga attatacata 4380 agacctccac cacatttagg aatgaatgat aagttgatac gtttgaagaa atcactttat 4440 ggattgaaac aaagtggagc gaactggtac gaaactatca aatcatacct gatacaacaa 4500 tgtggtatgg aagaagttcg tggatggtca tgcgtattta aaaacagtca agtgacaatt 4560 tgtttattcg tagatgatat ggtattgttt agcaaaaatc taaattcaaa caaaagaatt 4620 atagagaagc ttaagatgca atacgacacc aagattataa atctaggcga aagtgatgag 4680 gaaattcaat atgacatact tggcttagaa atcaaatatc aaagaggtaa atacatgaaa 4740 ttaggtatgg aaaactcatt aactgagaaa atacccaaat taaacgtacc tttgaatcca 4800 aaaggaagaa aacttagcgc tccaggtcaa ccaggtcttt atatagacca ggatgaacta 4860 gaaatagatg aagatgaata caaagagaag gtacatgaaa tgcaaaagtt gattggtcta 4920 gcttcatatg ttggatataa atttagattt gacttactat actacatcaa cacacttgct 4980 caacatatac tattcccctc taggcaagtt ttagacatga catatgagtt gatacaattc 5040 atgtgggaca ctagagataa acaactgata tggcacaaaa acaaacctac cgagccagat 5100 aataaactag tcgcaataag tgatgcttcg tatggcaacc aaccgtatta taaatcacaa 5160 attggcaaca tatatttact taatggaaag gtaattggag gaaagtccac caaggcttca 5220 ttaacatgta cttcaactac ggaagcagaa atacacgcga taagtgaatc tgtcccatta 5280 ttaaataatc taagttacct gatacaagaa cttaacaaga aaccaattat taaaggctta 5340 cttactgata gtagatcaac gatcagtata attaagtcta caaatgaaga gaaatttaga 5400 aacagatttt ttggcacaaa ggcaatgaga cttagagatg aagtatcagg taataattta 5460 tacgtatact acatcgagac caagaagaac attgctgatg tgatgacaaa acctcttccg 5520 ataaaaacat ttaaactatt aactaacaaa tggattcatt agatctatta cattatgggt 5580 ggtatgttgg aatagaaatc aactatcatc tactaactag tatttacatt actagtatat 5640 tatcatatac ggtgttagaa gatgacgcaa atgatgagaa atagtcatct aaattagtgg 5700 aagctgaaac gcaaggattg ataatgtaat aggatcaatg aatataaaca tataaaatga 5760 tgataataat atttatagaa ttgtgtagaa ttgcagattc ccttttatgg attcctaaat 5820 ccttgaggag aacttctagt atattctgta tacctaatat tatagccttt atcaacaatg 5880 gaatcccaac aattatctca acattcaccc atttctca 5918 //