ID M16577; SV 1; linear; genomic RNA; STD; VRL; 2791 BP. XX AC M16577; XX DT 02-APR-1988 (Rel. 15, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 5) XX DE Barley stripe mosaic virus (ND18) RNA-gamma segment. XX KW . XX OS Barley stripe mosaic virus OC Viruses; Riboviria; Virgaviridae; Hordeivirus. XX RN [1] RP 1-2791 RA Gustafson G.; RT ; RL Unpublished. XX RN [2] RP 73-2791 RX DOI; 10.1016/0042-6822(87)90211-X. RX PUBMED; 3590624. RA Gustafson G., Hunter B., Hanau R., Armour S.L., Jackson A.O.; RT "Nucleotide sequence and genetic organization of barley stripe mosaic virus RT RNA gamma"; RL Virology 158(2):394-406(1987). XX DR MD5; 631e27232b6b392536c8f69ed27e01b4. DR EuropePMC; PMC3260119; 22185375. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01075; TLS-PK1. XX CC Draft entry for [2],[1] kindly provided by G.Gustafson, 8-DEC-1987. XX FH Key Location/Qualifiers FH FT source 1..2791 FT /organism="Barley stripe mosaic virus" FT /strain="ND18" FT /mol_type="genomic RNA" FT /clone="pBSM-gamma-a." FT /db_xref="taxon:12327" FT CDS 88..2034 FT /codon_start=1 FT /product="unknown protein" FT /note="ORF1; putative" FT /db_xref="GOA:Q80875" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q80875" FT /protein_id="AAA66598.1" FT /translation="MDVVKKFAVMSVTVVAGPVLTLSSPVVVTFGTGLIAVSLVKRLLQ FT EQPRVIAHDHEHYPGGSESSSSSCRTAPILRNLSRDQCDSENIGCSSSACSPSEIVKVT FT RQVVGVERGLYRDIFQDNEIPSVMEEKLQKLLYSEGEKIRRRCQFEASTMHSRKVKVPE FT VGTIPDIQTWFDATFPGNSVRFSDFDGYTVATEDINMDVQDCRLKFGKTFRPYEFKESL FT KPVLRTAMPEKRQGSLIESVLAFRKRNLAAPRLQGALNEWHTIENVLTKALKVFFFEDL FT IDRTDHCTYESALRWWDKQSVTARAQLVADQRRLCDVDFTTYNFMIKNDVKPKLDLTPQ FT VEYAALQTVVYPDKIVNAFFGPIIKEINERIIRALRPHVVFNSRMTADELNETVAFLTP FT HKYRALEIDFSKFDKSKTGLHIKAVIGLYKLFGLDGLLKVLWEKSQYQTYVKDRNFGLE FT AYLLYQQKSGNCDTYGSNTWSAALALLDCLPLEDAHFCVFGGDDSLILFDQGYIISDPC FT QLAGTWNLECKVFDFKYPAFCGKFLLCIDGKYQFVPDAAKFITKLGRTDVRDVEVLSEI FT YISINDNYKSYKDFKVLDALDKALVDRYRSPYSAISALVSLCYHIFDFNKFKLLFNCEG FT KFVDKKLRKDFEW" FT mRNA 2050..2535 FT /note="ORF2 mRNA" FT CDS 2077..2535 FT /codon_start=1 FT /product="unknown protein" FT /note="ORF2; putative" FT /db_xref="InterPro:IPR007609" FT /db_xref="UniProtKB/TrEMBL:Q80876" FT /protein_id="AAA66599.1" FT /translation="MMATFSCVCCGTLTTSAYCGKRCERKHVYSETRNKRLELYKKYLL FT EPQKCALNGIVGHSCGMPCSIAEEACDQLPIVSRFCGQKHADLYDSLLKRSEQELLLEF FT LQKKMQELKLSHIVKMAKLESEVNAIRKSVASSFEDSVGCDDSSSVSK" FT misc_feature 2534..2553 FT /note="internal poly-A region" FT misc_feature 2554..2791 FT /note="tRNA-like structure" XX SQ Sequence 2791 BP; 805 A; 507 C; 646 G; 833 T; 0 other; gtatagcttg agcattaccg tcgtgtaatt gcaacacttg gcttgccaaa tacgctaaag 60 cgttcacgaa acaaacaaca cttcggcatg gatgttgtga agaaattcgc cgtcatgtca 120 gtgactgtag tagcaggtcc cgtccttacg ctttcatcac ctgtggtggt gacgtttgga 180 acaggcttaa ttgccgtatc tttggtgaaa cggttgctac aggaacaacc ccgtgtaatt 240 gctcacgatc acgaacatta cccaggtggt tctgagagca gttctagctc ttgtcgtacc 300 gcgcctattt tacgtaatct ttcgcgagat cagtgcgatt cagagaatat tggatgcagt 360 tctagcgcct gttctccgtc tgaaattgtg aaagttacaa ggcaggtagt gggagttgaa 420 cgtggtcttt accgggacat ttttcaggac aacgaaatcc catcagtcat ggaagagaaa 480 ctgcagaaac tcctttactc tgagggtgag aagattcgaa gacgttgcca atttgaagca 540 tcaacgatgc actcacgcaa agtaaaggtt ccggaggtag gtactatccc agatatccaa 600 acttggttcg atgctacgtt tcctggtaac tccgttaggt tttctgattt cgacggttat 660 actgttgcta cggaggacat taacatggat gttcaggatt gtagacttaa gttcgggaag 720 acttttcgac cttatgaatt taaggaatca ctgaaaccag tactgaggac agcaatgcca 780 gaaaaacgac agggtagttt gattgaaagt gtgctggcct ttcgtaaaag aaatttggct 840 gcgcccagat tacaaggagc tttgaatgaa tggcacacaa ttgagaatgt gctaacgaag 900 gcgttaaagg tattcttctt tgaagattta attgatcgaa cggatcactg cacttacgag 960 tcagcgctca gatggtggga taaacaatca gtgacagctc gagcgcagct cgtggcggat 1020 cagcggaggt tatgtgatgt tgacttcacg acttataact tcatgataaa aaatgatgta 1080 aagccgaagt tagatctaac acctcaagtt gaatatgcag ctttgcagac tgttgtatat 1140 cctgataaga tagtcaatgc tttctttggt ccgatcataa aggagattaa tgaacggatc 1200 atcagagcgc ttagacctca tgtggtcttt aattctcgta tgactgctga tgaactgaat 1260 gaaacagttg cctttttgac acctcataag tacagagcct tagagattga tttttcaaaa 1320 tttgataaat caaagactgg gcttcatatc aaagctgtca ttggactcta taagctcttt 1380 ggcctagatg gcctgttaaa agtgctctgg gaaaaatcgc aatatcagac ttacgtgaaa 1440 gatagaaact tcggtctcga ggcatatcta ttgtatcagc aaaagtcagg aaattgtgac 1500 acttacggtt cgaacacctg gtctgccgcc ttggcgttgt tagattgtct tcctttggaa 1560 gatgcacatt tctgtgtatt tggtggtgat gattcattga tattgtttga tcagggatac 1620 ataatttccg acccatgcca acttgccggt acttggaatc ttgaatgtaa agtgttcgac 1680 ttcaagtacc ccgcattttg tggtaaattt ctgctgtgca tagatggaaa atatcaattt 1740 gttccagatg cggcaaaatt tatcacaaaa ttaggtagaa ctgatgtgag agatgtagaa 1800 gttttgagtg agatttatat ctctatcaat gacaattaca aatcttacaa agactttaag 1860 gtgcttgatg ctttggataa ggctttagtg gatagatatc gatcccctta tagtgctatt 1920 tctgctttgg tttctttatg ttatcatatc tttgacttta ataagtttaa gttgctgttt 1980 aattgtgaag ggaaatttgt ggataagaag ctgagaaaag acttcgagtg gtgaactcta 2040 ggtcctgatg tttaaatcta ctgtatttac cttcgcatga tggctacttt ctcttgtgtg 2100 tgttgtggta ccttaactac aagtgcttac tgtggtaaga gatgtgagcg aaagcatgta 2160 tattctgaaa caagaaataa gagattggaa ctttacaaga agtatctatt ggaaccgcaa 2220 aaatgcgccc tgaatggaat cgttggacac agttgtggaa tgccatgctc cattgcggaa 2280 gaggcttgtg atcaactgcc aatcgtgagt aggttctgtg gccaaaagca tgcggatctg 2340 tatgattcac ttctgaaacg ttctgaacag gagttacttc ttgaatttct ccagaagaag 2400 atgcaggagc tgaaactttc tcatatcgta aaaatggcta agcttgaaag tgaggttaac 2460 gcaatacgta agtccgtagc ttcttctttt gaagattctg ttggatgtga tgattcttct 2520 tccgtttcta agtaaaaaaa aaaaaaaaaa aaatgtttga tcagatcatt caaatctgat 2580 ggtgcccatc aaccatatga tgggagtgtt tgcaagtcca ctataatcga acttgaaaac 2640 gatgcctgaa ttggaaacca tgaatcttaa cggattctgg agagaaaatt taggaattgg 2700 tatgtaagct acaacttccg gtagctgcgt cacactttaa gagtgtgcat actgagccga 2760 agctcagctt cggtccccca agggaagacc a 2791 //