ID M16576; SV 1; linear; genomic RNA; STD; VRL; 3164 BP. XX AC M16576; XX DT 02-APR-1988 (Rel. 15, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 5) XX DE Barley stripe mosaic virus (Type) RNA-gamma segment. XX KW . XX OS Barley stripe mosaic virus OC Viruses; Riboviria; Virgaviridae; Hordeivirus. XX RN [1] RP 1-3164 RX DOI; 10.1016/0042-6822(87)90211-X. RX PUBMED; 3590624. RA Gustafson G., Hunter B., Hanau R., Armour S.L., Jackson A.O.; RT "Nucleotide sequence and genetic organization of barley stripe mosaic virus RT RNA gamma"; RL Virology 158(2):394-406(1987). XX DR MD5; bc4f7a0d720e922e2e954a7e9c58793a. DR EuropePMC; PMC3915304; 24499968. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01075; TLS-PK1. XX CC Draft entry for [1] kindly provided by G.Gustafson, 8-DEC-1987. XX FH Key Location/Qualifiers FH FT source 1..3164 FT /organism="Barley stripe mosaic virus" FT /mol_type="genomic RNA" FT /clone="pBSM[49,244]." FT /tissue_lib="ATCC-PV43" FT /db_xref="taxon:12327" FT repeat_region 74..439 FT /note="366 bp tandem repeat copy A" FT CDS 89..2404 FT /codon_start=1 FT /product="unknown protein" FT /note="ORF1; putative" FT /db_xref="GOA:Q80873" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:Q80873" FT /protein_id="AAA66600.1" FT /translation="MDVVKKFAVMSVTVVAGPVLTLSSPVVVTFGTSLIAVSLVKRLLQ FT EQPRVIAHDHEHYPGGSESSSSSCATAPILRNLSRDQCDSENIGCSSSACSPSEIVKVT FT RQVVEVERGLYRDKQQFGMDVVKKFAVMSVTVVAGPVLTLSSPVVVTFGTSLIAVSLVK FT RLLQEQPRVIAHDHEHYPGGSESSSSSCATAPILRNLSRDQCDSENIGCSSSACSPSEI FT VKVTRQVVEVERGLYRDIFQDNEIPSVMEEKLQKLLYSEGEKIRRRCQFEASTMHSRKV FT KVPEVGTIPDIQTWFDATFPGNSVRFSDFDGYTVATEDINMDVQDCRLKFGKTFRPYEF FT KESLKPVLRTAMPEKRQGSLIESVLAFRKRNLAAPRLQGALNEWHTIENVLKKALKVFF FT FEDLIDRTDHCTYESALRWWDKQSVTARAQLVADQRRLCDVDFTTYNFMIKNDVKPKLD FT LTPQVEYAALQTVVYPDKIVNAFFGPIIKEINERIIRALRPHVVFNSRMTADELNETVA FT FLTPHKYRALEIDFSKFDKSKTGLHIKAVIGLYKLFGLDGLLKVLWEKSQYQTYVKDRN FT FGLEAYLLYQQKSGNCDTYGSNTWSAALALLDCLPLEDAHFCVFGGDDSLILFDQGYII FT SDPCRQLAGTWNLECKVFDFKYPAFCGKFLLCIDGKYQFVPDAAKFITKLGRTDVRDVE FT VLSEIYISINDNYKSYKDFKVLDALDKALVDRYRSPYSAISALVSLCYHIFDFNKFKLL FT FNCEGKFVDKKLRKDFEW" FT repeat_region 440..805 FT /note="366 bp tandem repeat copy B" FT mRNA 2420..2908 FT /note="ORF2 mRNA" FT CDS 2447..2908 FT /codon_start=1 FT /product="unknown protein" FT /note="ORF2; putative" FT /db_xref="GOA:Q80874" FT /db_xref="InterPro:IPR007609" FT /db_xref="UniProtKB/Swiss-Prot:Q80874" FT /protein_id="AAA66601.1" FT /translation="MMATFSCVCCGTSTTSTYCGKRCERKHVYSETRNKRLELYKKYLL FT EPQKCALNGIVGHSCGMPCSIAEEACDQLPIVSRFCGQKHADLYDSLLKRSEQELLLEF FT LQKKMQELKLSHIVKMAKLESEVNAIRKSVASSFEDSVGCDDSSSVSKL" FT misc_feature 2907..2926 FT /note="internal poly-A region" FT misc_feature 2927..3164 FT /note="tRNA-like structure" XX SQ Sequence 3164 BP; 895 A; 588 C; 744 G; 937 T; 0 other; gtatagcttg agcattaccg tcgtgtaatt gcaacacttg gcttgccaaa taacgctaaa 60 gcgttcacga aacaaacaac aattcggcat ggatgttgtg aagaaattcg ccgtcatgtc 120 agtgactgta gtagcaggtc ccgtccttac gctttcatca cctgtggtgg tgacgtttgg 180 aacaagctta attgccgtat ctttggtgaa acggttgcta caggaacaac cccgtgtaat 240 tgctcacgat cacgaacatt acccaggtgg ttctgagagc agttctagct cttgtgctac 300 cgcgcctatt ttacgtaatc tttcgcgaga tcagtgcgat tcagagaata ttggatgcag 360 ttctagcgcc tgttctccgt ctgaaattgt gaaagttaca aggcaggtag tggaagttga 420 acgtggtctt taccgggaca aacaacaatt cggcatggat gttgtgaaga aattcgccgt 480 catgtcagtg actgtagtag caggtcccgt ccttacgctt tcatcacctg tggtggtgac 540 gtttggaaca agcttaattg ccgtatcttt ggtgaaacgg ttgctacagg aacaaccccg 600 tgtaattgct cacgatcacg aacattaccc aggtggttct gagagcagtt ctagctcttg 660 tgctaccgcg cctattttac gtaatctttc gcgagatcag tgcgattcag agaatattgg 720 atgcagttct agcgcctgtt ctccgtctga aattgtgaaa gttacaaggc aggtagtgga 780 agttgaacgt ggtctttacc gggacatttt tcaggacaac gaaatcccat cagtcatgga 840 agagaaactg cagaaactcc tttactctga gggtgagaag attcgaagac gttgccaatt 900 tgaagcatca acgatgcact cacgcaaagt aaaggttccg gaggtaggta ctatcccaga 960 tatccaaact tggttcgatg ctacgtttcc tggtaactcc gttaggtttt ctgatttcga 1020 cggttatact gttgctacgg aggacattaa catggatgtt caggattgta gacttaagtt 1080 cgggaagact tttcgacctt atgaatttaa ggaatcactg aaaccagtac tgaggacagc 1140 aatgccagaa aagcgacagg gtagtttgat tgaaagtgtg ctggcctttc gtaaaagaaa 1200 tttggctgcg cccagattac aaggggcttt gaatgaatgg cacacaattg agaatgtgct 1260 gaagaaggcg ttaaaggtat tcttctttga agatttaatt gatcgaacgg atcattgcac 1320 ttacgagtca gcgctcagat ggtgggataa acaatcagtg acggctcgag cgcagctcgt 1380 ggcggaccaa cggaggttat gtgatgttga cttcacgact tataacttca tgataaaaaa 1440 tgatgtaaaa ccgaagttag atctaacacc tcaagttgaa tatgcagctt tgcagactgt 1500 tgtgtatcct gataagatag tcaatgcttt ctttggtccg atcataaagg agattaatga 1560 acggatcatc agagcgctta gacctcatgt ggtctttaat tctcgtatga ctgctgatga 1620 actgaatgaa acagttgcct ttttgacacc tcacaagtac agagccttag agattgactt 1680 ttcaaaattt gataaatcaa agactgggct tcatatcaaa gctgtcattg gactctataa 1740 gctctttggt ctagatggcc tgttaaaagt actctgggaa aaatcgcaat atcagactta 1800 cgtgaaagat agaaacttcg gtctcgaggc atatctatta tatcagcaaa agtcaggaaa 1860 ttgtgacact tacggttcga acacctggtc tgccgccttg gcgttgttag attgtcttcc 1920 tttggaagat gcacatttct gtgtatttgg tggtgatgat tcattgatat tgtttgatca 1980 gggatacata atttccgacc catgccggca acttgccggt acttggaatc ttgaatgtaa 2040 agtgttcgac ttcaagtacc ccgcattttg tggtaaattt ctgctgtgca tagatggaaa 2100 atatcagttt gttccagatg cggcaaaatt tatcacaaaa ttaggtagaa ctgatgtgag 2160 agatgtagaa gttttgagtg agatttatat ctctatcaat gacaattaca aatcttacaa 2220 agactttaag gtgcttgatg ctttggataa ggctttagtg gacagatatc gatcccctta 2280 tagtgctatt tctgctttgg tttctttatg ttatcatatc tttgacttta ataagtttaa 2340 gttgctgttt aattgtgaag ggaaatttgt ggataagaag ctgagaaagg acttcgagtg 2400 gtgaactctg ggtcctgatg tttaaatcta ctgtatttac cttcgcatga tggctacttt 2460 ctcttgtgtg tgttgtggta cctcaactac aagtacttac tgtggtaaga gatgtgagcg 2520 aaagcatgta tattctgaaa caagaaataa gagattggaa ctttacaaga agtatctatt 2580 ggaaccgcaa aaatgcgccc tgaatggaat cgttggacac agttgtggaa tgccatgctc 2640 cattgcggaa gaggcttgtg atcaactgcc aatcgtgagt aggttctgtg gccaaaagca 2700 tgcggatctg tatgattcac ttctgaaacg ttctgaacag gagttacttc ttgaatttct 2760 ccagaagaag atgcaggagc tgaaactttc tcatatcgta aaaatggcta agcttgaaag 2820 tgaggttaac gcaatacgta agtccgtagc ttcttctttt gaagattctg ttggatgtga 2880 tgattcttct tccgtttcta agttgtaaaa aaaaaaaaaa aaaaaatgtt tgatcagatc 2940 attcaaatct gatggtgccc atcaaccata tgatgggagt gtttgcaagt ccactataat 3000 cgaacttgaa aacgatgcct gaattggaaa ccatgaatct taacggattc tggagagaaa 3060 atttaggaat tggtatgtaa gctacaactt ccggtagctg cgtcacactt taagagtgtg 3120 catactgagc cgaagctcag cttcggtccc ccaagggaag acca 3164 //