ID M14363; SV 1; linear; genomic DNA; STD; VRL; 5517 BP. XX AC M14363; M21972-M21975; XX DT 07-JUN-1987 (Rel. 12, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 8) XX DE Bovine parvovirus DNA, complete genome. XX KW complete genome. XX OS Bovine parvovirus OC Viruses; Parvoviridae; Parvovirinae; Bocaparvovirus. XX RN [1] RP 1-5517 RX PUBMED; 3783814. RA Chen K.C., Shull B.C., Moses E.A., Lederman M., Stout E.R., Bates R.C.; RT "Complete nucleotide sequence and genome organization of bovine RT parvovirus"; RL J. Virol. 60(3):1085-1097(1986). XX RN [2] RP 1-160,5341-5517 RX PUBMED; 2843676. RA Chen K.C., Shull B.C., Lederman M., Stout E.R., Bates R.C.; RT "Analysis of the termini of the DNA of bovine parvovirus: demonstration of RT sequence inversion at the left terminus and its implication for the RT replication model"; RL J. Virol. 62(10):3807-3813(1988). XX DR MD5; b13859799d40c21f72d643a76643fbc8. DR EuropePMC; PMC115897; 11222696. DR EuropePMC; PMC2963602; 21049037. DR EuropePMC; PMC3838256; 24109231. DR EuropePMC; PMC4524367; 26239432. XX CC Computer-readable sequence for [1] kindly provided by Chen,K.C., CC 02-FEB-1987. CC The plus strand of the virus is shown below. Flip/flop CC conformations are in either of two orientations which are the CC reverse complement of each other. The flip conformation is shown CC in [1]. The flip and flop inversions for the 5' and 3' ends are CC shown in [2]. XX FH Key Location/Qualifiers FH FT source 1..5517 FT /organism="Bovine parvovirus" FT /lab_host="bovine fetal lung cell" FT /mol_type="genomic DNA" FT /clone="pAT153" FT /db_xref="taxon:10784" FT stem_loop 1..150 FT /note="5' terminal hairpin loop" FT misc_feature 46..106 FT /note="5' flip/flop inversion region" FT CDS 740..2920 FT /codon_start=1 FT /product="unknown protein" FT /note="left ORF; putative" FT /db_xref="GOA:P07296" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P07296" FT /protein_id="AAB59845.1" FT /translation="MQPSRGLYSALHSFKHLLITIRQRTHAPDTVLSRDELNAWNWLQK FT IAQRVMRGDMDDIVDILKCRKANGTLVAQAINGTEFITRYMLPKNRKVADTVLTRHTTP FT EQSYDSTWGKTYGFAVCNGETVSEFTRKDLWKVLYNIYTAHPAENMLNSNPSVWGDLPR FT VSANRIDADDAEARSRPIKLSRKQKIMAEVIQRATDGLLLTYNDLVVHLSDLMLMLEGM FT PGGSKTAEQLLTMIHIKLCAKYNAYEFMLMKTPATQNMNPGAPHYDCQGNLVFKLLNLQ FT GYNPWQVGHWLVMMLSKKTGKRNSTLFYGPASTGKTNLAKAICHAVGLYGCVNHNNKQF FT PFNDAPNKMILWWEECIMTTDYVEAAKCVLGGTHVRVDVKHKDSRELPQIPVLLSSNHD FT VYTVVGGNATFGVHAAPLKERITQMNFMKQLPNTFGEITPGMISNWLSHCAHIHQEHLS FT LEGFAIKWDVQSVGNSFPLQTLCPGHSQNWTFSENGVCWHCGGFIQPTPESDTDSDGDP FT DPDGAVAGDSDTSANSESTVSFSSNDSGLGSVTSSAPSVPDRAEEIEEIPSECLEWMRE FT EVDRLSAHDINSLAHQATGFILDPIPEEPEEGERDLAREDAEPEASTSHTPATKRARVE FT EGEPWDGTQPITEGDWIDFESRQKRRRLEREEKGGEDEDMEVQESDPSAWGEKLGIVEK FT PGEEPIVLYCFETLPESDEEGDSDKENKTHTV" FT CDS 2661..3302 FT /codon_start=1 FT /product="unknown protein" FT /note="mid ORF; putative" FT /db_xref="GOA:P07295" FT /db_xref="InterPro:IPR021075" FT /db_xref="UniProtKB/Swiss-Prot:P07295" FT /protein_id="AAB59846.1" FT /translation="MERSRSPRETGSTSSRDKSDADWSERRREERTRTWKSRSPIRARG FT ERSWGSWRSREKNQSSSTASRPYQKATRKETATKKTKHTPFNVFSAHRALSKTDLQFCG FT FYWHSTRLASKGTNEIFNGLKQSFQSKAIDGKLDWEGVRELLFEQKKCLDTWYRNMMYH FT FALGGDCEKCNYWDDVYKKHLANVDTYSVAEEITDSEMLEAAEAVDAANQ" FT CDS 3286..5307 FT /codon_start=1 FT /gene="VP2" FT /product="unknown protein" FT /note="right ORF; putative" FT /db_xref="GOA:P07297" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/Swiss-Prot:P07297" FT /protein_id="AAB59848.1" FT /translation="MPPTNKANSKKGLTLPGYNYLGPFNSLFAGAPVNKADAAARKHDF FT GYSDLLKEGKNPYLYFNTHDQNLIDELKDDTSFGGKLARGVFQIKKALAPALPGTSKGG FT DRALKRKLYFARSNKGAKKANREPAPSTSNQQNMEVSNDIPNDEAGNQPIELATRSVVG FT SGSVGGGGRGGSGVGYSTGGWTGGTIFSENIVVTKNTRQFICDIKNGHLYKSEVLNTGD FT TAHRQYAITTPWSYFNFNQYSSHFSPNDWQHLVNDYERFRPKAMIVRVYNLQIKQIMTD FT GAMGTVYNNDLTAGMHIFCDGDHRYPYVQHPWDDQCMPELPNSIWELPQYAYIPAPISV FT VDNNTTNTVEEHLLKGVPLYMLENSDHEVLRNGRIYRIYIQLWRLRMDRKQHHIQHASD FT DVQSTGQKQKNLLIQRTKQPNKQRFQNAALRTSNWMSGPGIARGTHNATLQTQSAGALV FT TMVTNGADVSGVRAVRVGYSTDPIYGGQQPESDLLRLRYSASAAEGQQNPILENAARHT FT FTREARTKLITGSNGADGDYKEWWMLPNQMWDSAPISRYNPIWVKVPRVNRKTLLDTQD FT GSIPMSHPPGTIFIKLARIPVPGNGDSFLNIYVTGQVSCEVVWEVEKRGTKNWRPEYMH FT SATNMSVDAYTINNAGVYAGAVQNADVMQTRFNHHKVL" FT CDS 3697..5307 FT /codon_start=1 FT /gene="VP3" FT /note="putative" FT /db_xref="GOA:P07297" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/Swiss-Prot:P07297" FT /protein_id="AAB59849.1" FT /translation="MEVSNDIPNDEAGNQPIELATRSVVGSGSVGGGGRGGSGVGYSTG FT GWTGGTIFSENIVVTKNTRQFICDIKNGHLYKSEVLNTGDTAHRQYAITTPWSYFNFNQ FT YSSHFSPNDWQHLVNDYERFRPKAMIVRVYNLQIKQIMTDGAMGTVYNNDLTAGMHIFC FT DGDHRYPYVQHPWDDQCMPELPNSIWELPQYAYIPAPISVVDNNTTNTVEEHLLKGVPL FT YMLENSDHEVLRNGRIYRIYIQLWRLRMDRKQHHIQHASDDVQSTGQKQKNLLIQRTKQ FT PNKQRFQNAALRTSNWMSGPGIARGTHNATLQTQSAGALVTMVTNGADVSGVRAVRVGY FT STDPIYGGQQPESDLLRLRYSASAAEGQQNPILENAARHTFTREARTKLITGSNGADGD FT YKEWWMLPNQMWDSAPISRYNPIWVKVPRVNRKTLLDTQDGSIPMSHPPGTIFIKLARI FT PVPGNGDSFLNIYVTGQVSCEVVWEVEKRGTKNWRPEYMHSATNMSVDAYTINNAGVYA FT GAVQNADVMQTRFNHHKVL" FT stem_loop 5371..5491 FT /note="3' terminal hairpin loop" FT misc_feature 5425..5437 FT /note="3' flip/flop inversion region" FT variation 5503 FT /replace="a" FT /note="c or a in [2]" XX SQ Sequence 5517 BP; 1710 A; 1273 C; 1418 G; 1116 T; 0 other; atatttttat tactcatttc ctgcatccac catattggct gcccgggcca ataatgcgag 60 cggctgcgcc gctgcgcgct tcgcgcgcgc attgtaaggc ctaatcgggc agccaatatg 120 gtggatgcag gaaatgagta ataaaaatat agagcctgtg attaagtgaa acgacatagg 180 cgaggacagg tggaccaatc acgttaaagg tcaagctaat gattaaccgg ggggtggaga 240 ctagagggta tataaagaaa gaaccaggaa gtcaaaaatc agactgctgc agacctcgac 300 agagaacaca cgtctctgcg ctctggtgag tgaagatggc tactgggggg ctagctaaat 360 gggtgggggc tgtgcaggcc tttgggcatc catcttggtc ctacgtcatc aagctacgtc 420 atggtcacgt gaccatgatt gagagaggct tctatgaact atgtggggga gagaattgga 480 atatgctcca cgaactacct ggagacaaat ggactgctgg agatgtggga gagcagagag 540 agcatgctag agagttggag tccgggagat ggacacagtt gggccatggc atgggcaggg 600 tggagagctg ctagagagac catgcagaga agacagtatg tcaacgagcc gacatttagt 660 tgctggagcc agagcgagct gggggagaac ggatggcatg tgcatataat tattgggggt 720 ccgggactga ccagacaaaa tgcagccatc tcgaggtcta tactctgcac ttcattcgtt 780 taaacacctt ctgatcacta ttagacagag aacacacgct ccagacactg tgctatctag 840 agatgagctg aatgcatgga actggctgca aaagatagct cagagggtga tgaggggaga 900 catggatgac attgtagaca tcctgaagtg cagaaaggcc aacggcacgc tggtagctca 960 ggcaatcaac ggcacagaat tcatcactag atatatgcta cctaaaaata gaaaggtggc 1020 tgacacagtc ttaacgagac acactacacc agaacagagc tacgactcta cttggggtaa 1080 aacatacggc ttcgcggtct gtaacggcga gacggtctcc gagttcacaa ggaaagatct 1140 ctggaaagtc ctttacaaca tctacacagc gcatccagct gagaacatgc tcaactcaaa 1200 cccaagcgtg tggggagacc ttccaagggt aagcgctaac cgcatcgacg cggacgacgc 1260 ggaggccaga tcaaggccga ttaaattatc cagaaaacaa aaaatcatgg ctgaggtgat 1320 tcagcgagcc actgatgggt tactgttaac ctacaatgat ttggtggtac atttgtctga 1380 tttgatgtta atgcttgagg gcatgccggg cgggagtaaa actgctgaac agctgcttac 1440 catgattcac attaaattgt gtgccaaata caatgcttat gaatttatgc tgatgaaaac 1500 tcctgctact caaaacatga atccgggagc accacactat gattgccagg gaaacttggt 1560 ctttaagctg ctcaacttac aaggatacaa tccttggcaa gtggggcact ggttagtcat 1620 gatgctttct aaaaaaacgg ggaaaagaaa ttctactctt ttctatgggc cggcgagcac 1680 agggaaaacc aatctcgcta aggccatctg ccacgcagtg gggctatacg ggtgcgtgaa 1740 ccacaacaac aaacagtttc cttttaacga tgcacccaac aaaatgatcc tgtggtggga 1800 ggaatgcatc atgactacag actacgtaga ggcagcaaag tgtgtgctcg ggggaactca 1860 cgtcagggtg gacgtgaaac acaaagattc tagggagctg cctcagattc cagtgcttct 1920 ttcgagcaac cacgacgtgt ataccgtcgt ggggggaaac gccacgtttg gagttcacgc 1980 ggcgccgctc aaagaaagaa tcactcaaat gaattttatg aagcagctcc ctaacacttt 2040 tggagaaatc actccgggca tgatttcaaa ttggctgtct cactgcgcgc acattcacca 2100 agaacatctg tcgctggaag gctttgctat taaatgggac gtgcagagcg tggggaacag 2160 ctttccttta cagactctct gtcctggcca ttcacagaac tggacattca gcgaaaacgg 2220 cgtctgctgg cactgcggag gtttcatcca gccaacacca gaatcagaca ctgactctga 2280 cggagatcct gaccctgacg gtgctgttgc tggcgatagc gatacttctg ctaacagtga 2340 gtctacagta tcgtttagca gtaacgactc aggactagga tccgtcactt catcagctcc 2400 atcggtacct gacagagccg aggaaataga ggagattccc agtgagtgct tggagtggat 2460 gcgggaggag gttgatagac tgagcgctca cgacatcaac tcactcgctc accaagctac 2520 tgggttcatc ctagatccca ttccagaaga accagaagaa ggggagcggg atctggctag 2580 agaggacgcc gagccagaag catcgacgag tcacactcca gctaccaaaa gagctcgcgt 2640 ggaggaaggt gagccgtggg atggaacgca gccgatcacc gagggagact ggatcgactt 2700 cgagtcgaga caaaagcgac gcagactgga gcgagaggag aagggaggag aggacgagga 2760 catggaagtc caggagtccg atccgagcgc gtggggagag aagctgggga tcgtggagaa 2820 gccgggagaa gaaccaatcg tcctctactg cttcgagacc ttaccagaaa gcgacgagga 2880 aggagacagc gacaaagaaa acaaaacaca caccgtttaa cgtgtttagc gctcaccgag 2940 cactctctaa aacagatctc cagttctgcg gcttctactg gcactcgact cgactggcca 3000 gcaaagggac taatgaaata ttcaatggac taaaacaatc atttcagtca aaagcgattg 3060 acgggaaact tgattgggag ggggtgagag aattattatt tgagcaaaaa aaatgtttag 3120 acacttggta tagaaacatg atgtatcact ttgccttggg gggtgattgt gaaaaatgta 3180 attactggga tgatgtgtac aaaaaacact tggctaatgt agacacttat tctgttgcag 3240 aagagataac tgattctgaa atgctggaag cggcagaagc tgttgatgcc gccaaccaat 3300 aaagctaatt caaaaaaagg cctgacatta cctggctaca attatttggg tccattcaat 3360 tctttattcg cgggcgcgcc agtgaataaa gcagacgcgg cagcgcgaaa acacgacttt 3420 ggctattccg acttgttaaa ggagggaaag aatccctacc tatactttaa cacacacgac 3480 caaaacctca tagacgaact caaagacgac acttcctttg gcgggaaact cgcaagagga 3540 gtgtttcaaa taaaaaaagc actggcgcca gctctgccag gcacatccaa gggaggagac 3600 agagccttaa aaagaaagct atactttgcg cgctcaaaca agggcgccaa aaaagcaaac 3660 agagaacctg caccaagcac atccaatcaa cagaacatgg aggtatcaaa tgatatacct 3720 aacgacgagg ctggcaatca gccaattgaa ctggcgactc ggtccgtggt aggatcgggt 3780 tcggtgggtg gcggcggccg agggggctct ggagtgggct actcaactgg cggatggacg 3840 gggggcacca tatttagcga gaacattgtg gtcactaaaa acactcgcca gtttatatgt 3900 gacatcaaaa acggccatct ctataaaagc gaggtgctta acactggtga cacggctcac 3960 aggcaatatg ccattaccac tccgtggagc tattttaatt tcaaccagta cagctctcac 4020 tttagtccta atgactggca acacctggtc aacgactacg agagattcag accaaaagcc 4080 atgatagtga gagtctacaa cctgcaaata aaacagatca tgacagacgg agccatgggg 4140 accgtctaca acaatgatct gactgcaggc atgcacatct tctgcgacgg ggatcacaga 4200 tacccgtacg tacagcatcc atgggatgac caatgcatgc cagagctgcc aaacagcata 4260 tgggagctac cacaatatgc ttacatacca gctccaatat cagtcgtaga caacaacact 4320 acaaacacag tagaagaaca cctactgaaa ggagtgcctc tgtacatgct ggaaaactct 4380 gaccacgaag tgctacgcaa cgggagaatc tacagaattt acattcaact ttggagactg 4440 cgaatggata gaaaacaaca tcacattcag catgcctcag atgatgtaca atccactggt 4500 cagaagcaga agaatctact catacagcgg accaaacaac caaacaagca acgattccag 4560 aatgcagcac taagaaccag caactggatg tcaggaccgg ggatcgcaag gggaacacac 4620 aacgcaactc tacaaacaca atctgcagga gcactggtga ccatggtaac taacggagca 4680 gacgtctccg gggtgagagc cgtgcgagta ggatactcga cggatccaat ctacggggga 4740 cagcaaccag agtcagacct gctaagactg agatactccg catcagcagc agaaggacaa 4800 caaaacccaa tattagaaaa cgcagcaaga cacactttta ccagagaggc gagaacgaaa 4860 ctgatcacgg gatccaacgg agcagacgga gactacaaag aatggtggat gctaccaaac 4920 cagatgtggg actcggcgcc tatctcgaga tacaatccaa tatgggtcaa ggtaccgaga 4980 gtcaacagaa agacactcct ggacacacaa gacggatcca ttccaatgtc acatccgcca 5040 ggaaccatct tcatcaagct agcaagaatt ccagtaccag gaaacggaga ctcgttcctc 5100 aacatctacg tcaccggaca agtctcctgc gaagtcgtct gggaggtaga aaagaggggc 5160 accaaaaatt ggagaccgga atacatgcac tcggcaacaa acatgtccgt cgatgcatac 5220 accatcaaca acgcaggcgt ctacgcaggc gcggtacaaa acgcagacgt catgcagacg 5280 agattcaatc accacaaagt cctgtagggg gccgcaagaa aaaagtcact ctatacaccg 5340 ctttatattt ttatacactg attcactctt tccaccatct tttagttgta ttcttagtta 5400 tcaataaagg cgcgaagcgc cataaaaaat tatgtcatat ggcgcttcgc gcctttattg 5460 ataactaaga atacaactaa aagatggtgg aaagagtgaa tccgtgtata aaaatat 5517 //