ID L77962; SV 1; linear; genomic RNA; STD; VRL; 6365 BP. XX AC L77962; XX DT 11-DEC-2001 (Rel. 70, Created) DT 08-DEC-2006 (Rel. 90, Last updated, Version 3) XX DE Bamboo mosaic virus, complete genome. XX KW complete genome. XX OS Bamboo mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6365 RA Yang C.-C., Liu J.-S., Lin C.-P., Lin N.-S.; RT "Nucleotide sequence and phylogenetic analysis of a bamboo mosaic RT potexvirus isolate from common bamboo (Bambusa vulgaris McClure)"; RL Unpublished. XX DR MD5; 3776a988b47404b209ad9d3fe6850a3e. DR RFAM; RF00290; BaMV_CRE. XX CC Genome sequence lacks part of non-coding region. XX FH Key Location/Qualifiers FH FT source 1..6365 FT /organism="Bamboo mosaic virus" FT /host="Bambusa vulgaris" FT /isolate="BaMV-V" FT /mol_type="genomic RNA" FT /db_xref="taxon:35286" FT 5'UTR <1..92 FT /note="putative" FT misc_feature 1..6 FT /note="putative 5' potexvirus consensus sequence" FT CDS 93..4190 FT /codon_start=1 FT /product="hypothetical protein" FT /note="putative" FT /db_xref="GOA:Q8UZ48" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q8UZ48" FT /protein_id="AAL40030.1" FT /translation="MALVSKVFDSITDPSLRAVLQEEAHSQVKQVLKDTALYSRYALLP FT TAANTLERYAIPHNPFSTKLHTHAAAKALENDLYRTASYLLPKERVSFLFMKPSKMQYF FT RRRGDVDTFINADIVAKDLARYPLETIYPRLPEITTKMAFIGDSLHYFQPEVLEHIFAS FT SPQLETLLATIVLPPEATLRLKSLYPEIYTLHYMPQKFLYKPGGLSGGEYEHDYKDLTW FT LKIGHVTTASMCLTVDRVESKAANHLLLIRRGRLKLSTYRSYDTPEPLVVVPKIFLPPK FT YNAQKPITKTKANSWILYVKSAGEPKIRDVWAKLRQTIANSELNQYEPAELLLLTNYFY FT VLGKLDSITSFETLLGDNILKRLFRPAIAKIQELRHWVSGPTAFMQLYKALQLVDVDFT FT FEVTKNWETKQENHHEPELPKDAIDMLVQSLIGINYTDAATAEATSPNQQASESKPQSD FT LPQPLQQTKCPEDAEAPAPLECKTAETAQEACKAGPSSNPTLNTSQEAPPSELKNSEER FT TCPTLRELPWKAWLKLLRGLGFQGDLEQLDIEGDPIYPIKHIRHLPVEEFNSPITATLR FT KMNRMPCKYSPDIERAAAFARDVMSNKTGAILPKQSHEWKTTLKRKCKLAPRQTLISVI FT HGAGGSGKSRALQEYMRNNKEDPIVTILPTNELRADWKAKLPAHDPDMFMTFENALLIP FT KGNVVIMDDYTKLPRGYIEAYVQNSPMLDLLILTGDPRQSEHFESVEGNTINDLSPSPV FT VFSAYARYYINATHRNNQDLANALGVYSEKQGKTRISVSNHIEDGRHTLVPSQIKQRNY FT VSMGRKTSTYAGCQGITASRVQVIIDNDTAKCSHQVLYTAFSRAADEIHFCNTMTDEKQ FT FWAKVKCTPYLQAILNLTKEHSLPDPKPEPDEPLEPKAPVTHIAVENVVPLVEEITEPL FT PEKHDREIYSESTGHSNCIQTENEFIQAFQHQQAKDETLFWATIEKRIVTSTPESNWTE FT FKTKKPLGDILWLAYKEAMCLPAEPIKFDPDLWWKCADEVQNKYLQKPLHMIKNGILRQ FT SPDFGERHIALFLKSQWVKKNEKIGTVNVKAGQTIAAFYQSTVMIFGTMARYMRLVREK FT FCPKNILINCEIDQPTASKWVDTHWKFDRLAYTNDFEAYDQSQDGAMLQFEVMKARHHD FT LPADLIESYIELKLNAKIFLGTLGIMRLTGEGPTFDANTECNIAYTHARFHIPRGTAQL FT YAGDDCALNCEPKERESFKPLRAQFTLKSKPVTIRQGKGSWPEFCGNIITPYGYLKHPR FT KTWAALHKAKLQGKNELKKTATAYALDVLPTYELGDAIHDIFTDNELTFHYQTIRTLHT FT EAHTRVFTNHDAIFGEEGLFSS" FT CDS 4217..4978 FT /codon_start=1 FT /product="hypothetical protein" FT /note="putative" FT /db_xref="GOA:Q8UZ47" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q8UZ47" FT /protein_id="AAL40031.1" FT /translation="MDNRITDLLTRSGYTRTSEPRGAGQQLVVHAVAGAGKTTLLREIL FT NTIPGVTIHTAGTPDPPNLTLNYIKGQEPPCSKKYTILDEYPARAKWPEEAWDMLIADN FT LQHTGPTTRPHYIKHTTYRLGPQTVKALQNLGYQLEFQHRVDQQDQGFSFTGLFDGPIY FT GQPITLDTAAHNLALAHGLPALQATQTRGLEYDTTTIISSTPLPTVKDKVGLYIAFTRH FT RKACHIRAPGVDPTRDVASSHGPAPSSGQTT" FT CDS 4944..5303 FT /codon_start=1 FT /product="hypothetical protein" FT /note="putative" FT /db_xref="GOA:Q8UZ46" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q8UZ46" FT /protein_id="AAL40032.1" FT /translation="MDQPLHLARPPDNTKAYLVLAIGVASALFLYTLTRNTLPHTGDNI FT HHLPHGGRYVDGTKGILYNSPTSSYPSSSLPFSMVIALATTLFLITKTILNPAPTTPRV FT YAPLCLHCHRNHPPC" FT CDS 5297..5455 FT /codon_start=1 FT /product="hypothetical protein" FT /note="putative" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q8UZ45" FT /protein_id="AAL40033.1" FT /translation="MLNTDTLCIILFILILGILYNVLQQRQPPPCEIIINGHTISIRGN FT CYHTTSS" FT CDS 5497..6225 FT /codon_start=1 FT /product="hypothetical protein" FT /note="putative" FT /db_xref="GOA:Q8UZ44" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q8UZ44" FT /protein_id="AAL40034.1" FT /translation="MSGTGTGTGRGTGTGAGGTGGTGGTGDGGTGRGQQAAAQPWEAKF FT TKDDLAAIEPKPASANVPNTKQWINIQAGLLKAGATDTNFMKVLLGLSLEAFDRGSSEA FT TTWDGATEGVEHRAAANAIKEANCPIHKVTYHLAKPTFAIRQSKNLPPANYAKKNVPSQ FT YKWCAFDAFDGLYDPTCLASELPYDAPSEIDRMAYATFKTIQIKTANDQKGFNLNYNPN FT VTQARLPNAPLPALPEPTSD" FT misc_feature 6313..6318 FT /note="putative 3' potexvirus consensus sequence" FT regulatory 6332..6337 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" XX SQ Sequence 6365 BP; 1924 A; 1892 C; 1334 G; 1215 T; 0 other; gaaaagcatt ccaaacaaac gaaaaggaaa caaaagacat agaaaacgaa ctgccaattg 60 tcccctacag tcgccccgtg cgtgcggcaa caatggcact cgtctctaaa gtcttcgaca 120 gcatcaccga cccatccctg agggcggtac tccaagaaga agcgcactca caagtaaagc 180 aggtgctcaa ggacacagcg ctgtactcaa gatacgccct cctccccact gctgcaaaca 240 cgctcgaacg gtacgccatc ccccacaacc cgttcagcac taaattacac acacacgcag 300 cagcaaaagc ccttgagaat gacctctatc ggacagcctc atatctcctc ccaaaagaaa 360 gagtgtcatt ccttttcatg aagccgtcta agatgcaata tttccggaga agaggagatg 420 tcgacacctt catcaatgct gacatcgtcg ctaaagacct cgccaggtat cctctggaga 480 ctatctaccc ccgcctccca gaaatcacta caaagatggc tttcattggg gatagcctgc 540 actactttca gcctgaggtg ctggaacaca tctttgctag ctccccacaa ctggagaccc 600 tactcgccac aatcgtcctc ccccccgaag ccacacttag acttaagagt ctataccctg 660 aaatctacac actacactac atgccccaga aattcctcta caaacctggg ggactctcgg 720 gcggggagta cgaacatgat tataaggacc tgacctggct aaaaattggg catgtcacga 780 ctgcatccat gtgcctcaca gtcgaccggg tggagtctaa agcggccaat cacctactac 840 tcatacgtcg gggaagactc aaactcagca cttacagatc ctatgacacc cctgaacctt 900 tagtcgtggt gccaaaaatt ttcctccccc caaagtacaa tgcacaaaaa cccattacca 960 agacaaaagc aaattcatgg attctctacg tgaagtcagc tggggaacca aaaatcagag 1020 atgtttgggc caaactcagg caaaccatag caaactcaga acttaaccaa tatgagcctg 1080 cggagttgct acttttaaca aactactttt atgtgctggg caagttagac tccatcacat 1140 ccttcgagac cttgctcggc gacaatatac tcaaacgcct cttcagaccg gccattgcaa 1200 aaattcaaga actcagacac tgggttagtg gccccacagc cttcatgcaa ctttacaagg 1260 cgctgcaact cgtcgatgtc gacttcacct ttgaggtaac aaagaactgg gaaacgaaac 1320 aggaaaacca ccatgaacct gaactcccaa aagatgccat tgacatgctc gtccaatccc 1380 tcatcggtat taactacaca gacgcagcaa ctgctgaagc cacaagccct aaccaacaag 1440 caagcgagtc aaagccccaa tccgacctcc cacagcctct ccagcaaacc aagtgtcccg 1500 aggatgcaga ggcgcctgct ccactagaat gtaaaacggc tgaaactgcg caagaagctt 1560 gcaaagcagg gcccagctca aaccccactc tcaacaccag ccaagaggca cccccatcag 1620 aactcaaaaa cagcgaggaa cgaacatgcc ccacactgcg tgaactaccg tggaaggcgt 1680 ggctcaaact actcaggggc ctcgggttcc agggcgacct tgagcagttg gacatcgaag 1740 gggatcccat ttacccgatt aaacacatcc ggcatttacc ggttgaggag ttcaacagcc 1800 caatcacagc aaccctgaga aaaatgaacc ggatgccatg caaatactcc cccgacatcg 1860 agagagcagc cgcattcgca cgagatgtga tgagcaataa aacaggggcc atcctcccga 1920 agcagtctca cgagtggaag actacactta aaaggaaatg caaactcgct cctcgacaaa 1980 cccttatttc tgtaatacat ggtgcaggcg gcagcgggaa atcaagagcc ctgcaagaat 2040 acatgaggaa caataaggag gaccctatcg tcaccatcct cccgacaaat gagctaaggg 2100 ctgattggaa agctaaactg cccgctcacg atcccgatat gttcatgaca ttcgagaacg 2160 cactgctgat cccaaaaggc aacgtggtca tcatggatga ttacactaaa ctaccacgcg 2220 gatacattga ggcgtacgtg cagaactccc caatgctaga tctgctcata ctcacagggg 2280 accctaggca atccgaacac ttcgaatcgg ttgaagggaa cacgattaat gacctcagcc 2340 cctccccagt tgtcttcagc gcgtacgccc gctactacat caacgcaacc cacaggaaca 2400 accaggactt ggcaaacgcc ttgggggtct actcagaaaa acaagggaaa acgcgaatat 2460 cagtcagcaa ccacatcgag gacgggcgcc acacattagt tcccagtcaa atcaaacaaa 2520 gaaactacgt ctccatgggc aggaaaacct cgacctacgc gggctgccaa gggataaccg 2580 cttcacgtgt acaggtcatc atcgacaatg acactgcaaa gtgctcacac caggtcctat 2640 acacagcttt ctccagggcc gcggatgaaa tacacttctg caacactatg accgatgaaa 2700 aacaattctg ggcgaaagtg aagtgcaccc cgtatctaca ggcgatcctc aacctgacca 2760 aggaacactc cctgccggac ccgaagcctg aaccagacga acccctggag cccaaagccc 2820 ccgtcaccca cattgccgtg gagaatgtgg tgccacttgt ggaagaaatt accgagcccc 2880 ttcccgagaa gcacgaccgg gaaatctact cagaaagcac cggacactcc aactgcatcc 2940 aaactgagaa cgagtttatc caagctttcc aacaccaaca ggcaaaagac gaaactctat 3000 tctgggctac tattgaaaaa cgcatagtca cctcgacccc tgaatcaaac tggactgaat 3060 tcaaaacgaa aaagccccta ggcgatatcc tgtggctggc ctacaaggaa gctatgtgcc 3120 tgccagcaga gcccatcaag ttcgatccag atctttggtg gaaatgtgcc gatgaggtac 3180 aaaataagta cctacagaaa cctcttcaca tgatcaaaaa cggaatactc agacaaagcc 3240 cagactttgg agagcgccac attgccctat ttttgaagtc gcagtgggtg aaaaagaacg 3300 aaaaaattgg gacagtcaat gtcaaggctg gccaaaccat cgctgcattc taccagagca 3360 ctgttatgat ctttggtacg atggcgcgtt acatgaggct ggtccgagaa aagttctgcc 3420 caaagaacat cctaattaac tgcgaaattg atcagcccac ggcatcaaaa tgggtggata 3480 cgcactggaa attcgacagg ttggcgtaca caaacgactt tgaagcatat gaccagtcgc 3540 aggatggggc catgttgcag ttcgaagtca tgaaagcaag acaccatgat ctgcctgctg 3600 acttgattga gtcctatatt gaacttaagc taaacgcaaa aatattccta ggcacccttg 3660 gcatcatgag actgactgga gagggaccta catttgacgc caacactgaa tgcaacattg 3720 cttacacgca tgcccgattc cacataccca gaggcactgc acaactatac gccggggatg 3780 attgcgccct caactgcgaa cctaaagaaa gagaatcatt caaacctttg cgtgcgcaat 3840 tcaccctcaa atcaaaaccg gtgaccataa gacaaggaaa aggctcctgg cccgagtttt 3900 gcggtaatat catcactccc tatggctatc tcaaacaccc tcggaaaaca tgggccgcac 3960 tgcacaaggc caagctccaa gggaaaaatg aattgaagaa aaccgccacg gcctacgcgc 4020 tcgacgtgct accaacatac gaactagggg acgcaataca cgacatattc actgataacg 4080 agctgacttt ccattaccaa acaatcagaa ccctacacac agaggcacac actcgagtct 4140 tcaccaacca cgacgcaatc ttcggtgaag aaggtttatt ctctagttaa gtaacctatt 4200 agtttaataa ctaaccatgg ataaccgaat aactgaccta ctcacaagat ctggctatac 4260 aagaacatcc gaaccaaggg gtgctgggca gcaactagtc gtgcacgcgg tggctggtgc 4320 tggtaagacg acgctactcc gcgagatact gaataccatt ccaggagtca caatacacac 4380 cgcaggcacc cccgacccac caaacctcac cctcaactac atcaaaggcc aagagccccc 4440 ttgctcaaag aagtacacta tcctagacga gtacccagct agagccaagt ggccggagga 4500 ggcctgggac atgctgattg ccgacaacct ccaacataca ggccccacaa ctcgccccca 4560 ctacattaag catactacct acagacttgg cccccaaaca gttaaagcgt tacagaacct 4620 tgggtaccaa ctagaattcc aacaccgcgt ggaccagcaa gaccagggct tctcattcac 4680 tggactattc gatggcccaa tttatgggca accgataacg ctcgacacag cagcccacaa 4740 cctggccttg gctcacggat taccagcttt acaagcaacc caaacgagag ggctagaata 4800 cgacaccacc accattatct ctagcacccc tctgccaaca gtcaaggaca aggtgggcct 4860 atacattgca ttcaccaggc accgaaaagc ttgccacatc cgagcacccg gggttgatcc 4920 cacacgtgac gtggcctcct ctcatggacc agccccttca tctggccaga ccacctgaca 4980 acaccaaagc ctacctagta ttagctatag gagtagcgag tgcattattc ctctacacgc 5040 taacccgcaa cactctccca cacaccggcg acaatatcca ccacttgcca cacgggggca 5100 ggtacgtgga cggcaccaaa gggattctct acaacagccc cacctcgtca tacccatcct 5160 catccctccc tttctccatg gtcatcgcac tggccacgac cctcttcctc atcaccaaaa 5220 ccatcctcaa tccagcccca accacaccta gagtttacgc gcccctttgc ttgcattgtc 5280 accggaacca cccaccatgc tgaacactga cacgctctgc atcatcctgt tcatattaat 5340 attaggcata ctctataatg tactccaaca gcgtcagccc ccaccatgtg aaataataat 5400 aaacggacac actatatcca tcagaggcaa ctgctaccac actacctcca gctagggttt 5460 gttaagtttc ccttgtttgt aaattaaaca ctaaagatgt ctggaactgg aacaggaact 5520 gggcgaggga ctggaactgg tgcgggaggc actggaggca caggcggcac gggcgacgga 5580 ggaacgggta gagggcaaca agctgcagcc cagccttggg aagcgaagtt cactaaagac 5640 gacctggctg caattgagcc aaagcctgcc tcagccaatg tgccaaacac gaagcagtgg 5700 atcaacattc aagctggact cctcaaggcc ggagccacag acacaaactt catgaaagta 5760 cttcttggcc ttagcctcga agccttcgac aggggttcat cagaggccac cacctgggac 5820 ggagctactg agggcgtgga gcatcgtgcg gcagccaacg cgatcaagga agcaaactgc 5880 ccaatacata aagtcaccta ccacctagcc aaaccgacgt tcgccatcag gcaatcgaaa 5940 aaccttcccc cagcaaacta tgcaaagaag aatgtgccat cacaatacaa atggtgtgcg 6000 tttgatgctt ttgacggctt atatgatccc acctgccttg cctcagaact accctatgac 6060 gccccctcag agatagatcg aatggcgtac gctaccttca aaaccataca gatcaagacc 6120 gccaatgacc agaaagggtt taacctcaat tataacccta acgtcactca ggcccgactc 6180 cccaacgcgc ccctaccagc tcttcccgaa ccaacgtcag actaaacgtt gcatgatcgt 6240 aaaacatgcc cggcttaccg tgagccgcct ttgaaagaaa ggtttacacg gactctgttg 6300 cgttacgcac gtacctaact tgtgccggca gaataaagac cttttggttt ctacagtttt 6360 ttcca 6365 //