ID L76292; SV 1; linear; genomic RNA; STD; VRL; 2452 BP. XX AC L76292; XX DT 08-MAR-1996 (Rel. 47, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 2) XX DE Shallot virus X non-structural protein, coat protein and 15 kDa protein DE genes, complete cds's. XX KW coat protein; nonstructural protein. XX OS Shallot virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Allexivirus. XX RN [1] RP 1-2452 RA Kaloshin A.A., Krutov A.A., Vishnichenko V.K., Ryabov E.V., Zavriev S.K.; RT "Shallot virus X 3'-end of genomic RNA"; RL Unpublished. XX DR MD5; 39be70b8eff8a9487f41e4b690a8dee8. DR EuropePMC; PMC3550721; 23637504. XX FH Key Location/Qualifiers FH FT source 1..2452 FT /organism="Shallot virus X" FT /isolate="1995" FT /mol_type="genomic RNA" FT /dev_stage="mature" FT /db_xref="taxon:31770" FT CDS 1..1143 FT /codon_start=1 FT /product="non-structural protein" FT /function="unknown" FT /note="42kDa protein of ShVX is accumulated in infected FT tissue" FT /db_xref="InterPro:IPR008398" FT /db_xref="UniProtKB/TrEMBL:Q88457" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAA88539.1" FT /translation="MVIVTTFHIDAARDRIINCVNDVRNIVANQVVPATRKLGAIETTL FT ESFKTETIAGLTNISDCVSLLRNLRSETTSNFNALLNRYVEPVGQAQTQWAQGLGEPEV FT SKIEERTFFSNLDTALNSTQALLNHVPPARYTLPPASLPVNELFGQLHALHLNTLEWLT FT HINHNLDSMLNMLNPVNLMSQGTPLSRLRDAVRTLTQDLGSIKSDQQKILASISTIDHS FT DILHKLDSLDTGLRQLGIRLDVVVSSLNHMNERPPNASHDIASSSAATDRNPLPLYQAV FT HPSLFCRTYGNILYNGVDSRIPMDITGRPASTSLKLTITVDCSEQSTKVNFTLLDDGYI FT LLSDSIETKHKLQHIPSDCLSLIHARCPKFVYKFRGEGLC" FT CDS 1167..1955 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q88458" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q88458" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAA88540.1" FT /translation="MNEDDLNRLNASGDLNGANNQRIPAGPSGVNQPIPSVTAGGQNQF FT RPSGGLGNQGSRPTESSNQDELLPTEAEIDAITSDVESNSVAPKASIREILDTLQAKRQ FT NATPKDLFSLAWACYHNGSSRFVNLNTDAPCGITHAELKDLVEGFCTLRQFCSYYAKSC FT YVSGKQQKKPPANWSRKGYPEEAKFAGFDFFNAVLSESSPAPPGGMRFKPTQAEILGHS FT MNAKMSIVESRQSSHMVSTRADLLGRQQINVQPKPPMITF" FT CDS 1955..2338 FT /codon_start=1 FT /product="15 kDa protein" FT /function="unknown" FT /note="15kD of ShVX contains Arg-rich region and zink FT finger motif; putative" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:Q88459" FT /protein_id="AAA88541.1" FT /translation="MHPHDLNLLCCLHFSKPSFPNDLKTLLFRVCETSCKLNRRLLDNK FT PFQGTSKCAKRSRAKRYNRCFDCGAYLYDDHVCKRFTSRSNSDCLSVIHQGPAKLYAEG FT AYRANSDAEQLIMNDMLLIKSLK" XX SQ Sequence 2452 BP; 695 A; 668 C; 507 G; 582 T; 0 other; atggtaattg tcacaacctt ccacattgac gctgcacgcg atcgtatcat aaattgtgtt 60 aacgatgtca ggaatatcgt cgccaaccag gtcgtgcccg ccacccggaa attaggagca 120 atcgagacca cactggagag tttcaaaacg gagaccattg ccggacttac aaacatttca 180 gactgtgtgt ccttactcag gaatttgagg tcagagacaa caagcaactt caacgcttta 240 ctcaaccgat atgtcgaacc ggtaggccaa gcacaaaccc aatgggctca agggctcgga 300 gagccggagg tgagcaagat tgaggaaaga accttctttt caaatttgga cacagccttg 360 aactccacac aagctctcct taaccacgta cctccagcga gatacacact tcccccggct 420 tccctgcccg tgaatgaact atttggacag ttgcacgctt tacatttaaa cacgctggaa 480 tggctgacgc acatcaacca caacctggac tctatgctca acatgctcaa ccctgtaaat 540 ctgatgtctc aaggaactcc actcagccgt ttgagagacg cagtccgtac ccttacccag 600 gacttaggct ccatcaagtc ggatcaacaa aagattctgg catccatttc aaccattgac 660 cactcggaca ttttgcataa gttggattca ctagacacgg gtctaagaca acttggaatt 720 aggttagacg tcgttgtttc gagtctcaac cacatgaacg aacgaccacc caatgcctca 780 catgacattg ccagctcatc tgcagcaaca gaccgaaacc ctttgccact gtaccaggcc 840 gttcacccaa gtctattttg ccgcacttat ggtaacatcc tctacaacgg cgtcgactcc 900 cgaattccga tggacataac aggtaggcca gctagcactt ctctcaagtt aactatcacc 960 gttgactgca gcgagcagag cacaaaagtt aacttcacgc tactcgatga tggatatatt 1020 ttgctgtctg attctatcga aaccaaacac aaacttcaac acatcccaag cgattgttta 1080 tccttaatac atgccagatg ccccaaattt gtttacaaat ttaggggtga aggtctgtgt 1140 taagttgtcg ggtagctcga aacacaatga acgaagacga tttgaatcgt ttgaatgcat 1200 caggggacct caacggcgcc aataatcaac gaatcccggc gggaccatcc ggcgtcaacc 1260 agccaatccc gagcgtaacc gcaggtggtc aaaatcagtt cagaccctcg ggaggacttg 1320 gcaaccaagg ctcacgccca actgaatcga gtaatcagga tgaactattg cccactgaag 1380 ctgagattga cgccatcact agcgacgtgg agtccaattc cgtagcaccc aaagcctcca 1440 ttcgcgaaat cctggacacc ttacaagcta agaggcaaaa cgccaccccg aaagatctat 1500 tctcattagc ctgggcctgc taccacaatg gatcctcaag gttcgtgaac ttgaatactg 1560 acgccccttg cggaataacg cacgcggagc ttaaagacct tgtggaaggc ttctgcacgc 1620 tcagacagtt ctgcagctac tacgctaaat catgctatgt ttcagggaaa cagcagaaga 1680 aacctcctgc taactggtct cgaaaaggat atcctgagga ggccaagttt gccggctttg 1740 atttcttcaa tgcagtgctg agtgagtctt ccccagctcc accgggcgga atgcggttca 1800 aacccacgca agctgaaatt ctcggccact caatgaacgc taaaatgtcc atagtcgagt 1860 cccgccaatc atcgcacatg gtttcaacta gagccgacct cctaggccgc caacagatta 1920 acgtacaacc caagccgccg atgataactt tctgatgcat ccccacgatc taaatcttct 1980 ttgctgccta catttctcga aaccttcctt tcctaacgac ctcaaaactc tccttttccg 2040 tgtttgtgag actagctgta aattaaaccg tagattatta gacaacaagc ctttccaagg 2100 cacctctaag tgtgctaaac gcagcagagc aaaacgttat aatagatgtt ttgactgtgg 2160 tgcctactta tatgatgatc atgtgtgcaa acgctttacg agtcgctcta attctgactg 2220 tttgagtgtc atccatcagg gtcctgctaa gctatatgct gaaggggctt accgagcaaa 2280 ctcagacgcc gaacagttaa ttatgaacga catgctatta attaaatctc ttaaataata 2340 aggcttggcc caagcctccc actgggttta cagggctctg gacgtgacca aagacactca 2400 cgattgttga tatagctaaa cttactctgc tacaacattt gtccccgcga ca 2452 //