Dbfetch
ID L49381; SV 1; linear; genomic RNA; STD; VRL; 7261 BP. XX AC L49381; XX DT 31-MAY-1996 (Rel. 47, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Barley mild mosaic virus RNA1 encoding P3, 6K1, CI, 6K2, NIa, NIb and DE capsid proteins. XX KW capsid protein; CI helicase; NIa proteinase; NIb RNA polymerase; KW polyprotein. XX OS Barley mild mosaic virus OC Viruses; Riboviria; Potyviridae; Bymovirus. XX RN [1] RX DOI; 10.1006/viro.1995.1495. RX PUBMED; 7571407. RA Dessens J.T., Meyer M.; RT "Characterization of fungally and mechanically transmitted isolates of RT barley mild mosaic virus: two strains in competition"; RL Virology 212(2):383-391(1995). XX RN [2] RP 1-7261 RX DOI; 10.1006/viro.1996.0245. RX PUBMED; 8623538. RA Meyer M., Dessens J.T.; RT "The complete nucleotide sequence of barley mild mosaic virus RNA1 and its RT relationship with other members of the Potyviridae"; RL Virology 219(1):268-273(1996). XX DR MD5; 1080dac85e0951cf4d398c4ed054e491. XX CC Dessens,J.T. and Meyer,M., Characterization of CC fungally and mechanically transmitted isolates CC of barley mild mosaic virus: two strains in CC competition, Virology 212, 383-391 (1995) CC refers to bases 6112 to 7262. XX FH Key Location/Qualifiers FH FT source 1..7261 FT /organism="Barley mild mosaic virus" FT /strain="Reims-M" FT /mol_type="genomic RNA" FT /db_xref="taxon:12466" FT 5'UTR 1..147 FT /note="putative" FT mat_peptide 148..1023 FT /product="P3 protein" FT /note="putative" FT CDS 148..6924 FT /codon_start=1 FT /product="polyprotein" FT /note="putative" FT /db_xref="GOA:Q65654" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q65654" FT /protein_id="AAC42215.1" FT /translation="MEEFIPEVFYQNQVQSLKKILKSWKRDTSIYAYLAREQEVLAFLV FT LSPAHIAKLNKLLTEESARCALLAQNCETIEALAVVRQALQGVTLHFGDNGMEKGWLHM FT MKALDACLDESFSENAAALKKSIQAVGHKLIAAKNRIESCERSVNHLTTFQFAREYGLS FT TTYFEKLSNFGGHIRSFVWSSDSGEIFPKLKRSSRTRRISTFTSYYWGEFWCNCIWFLC FT CCWSPARWCFNSAVSIWSLCGVLNLSMIVLQFALKRHFGRYYFRYIMSGVLAICAVCCV FT HLKNRKGPILQASQKDKRFIGILAFCITVIYMFDVDLADSLSNNLHKISRLVNLFLDDN FT RGFATPAFDNLTDFTTILQSGTSSDDLKIVQDTLAVVLQVDEEDATQDDAIYDSDGLQT FT FKQWVSHNQLAGMQLARPLQYPCSNTYGLTADNVAELATSMAQEAKQWSQVVGHTGSGK FT STRLPTAYANCLKGLAGRKKNVLVCEPTRAATVNVTSGISQNFGRLVYGRHEGWSNLGD FT KTIQVMTYGSALAAWKVDNKFLSQFDAVFLDESHLITTHALVFESICQEVTNVRKFYVS FT ATPRDGKKCPEAVRRYEIKTVKTECSSVDTFVRSQEKENTLYVLNHDTVLVFLAGKAEC FT DRAASNWNKLYSTNMYAHSLTGDNFTIAYEKIVTRMLTERTIVFCTNILETGVTLNVDC FT VVDFGFTMRPELDLVDKSLTLMRRRVTENERAQRIGRAGRLRTGYAICIGNPETRHDLV FT PPETLYEAALLSFVHGVQFYINEHFENAWIQGVTKSQASVMTQFKLSPFLMRDIVRDDG FT AIPLSLHKILKDYTHRNTDLIGTKLSVMSHIYNSWPLYRTVQQSISRGDSNVPQALRYA FT RVPFNVSTAHDFPWEDFAQACLEFQPRVLQVFSDNSSTSRIINLQIGKMHIINSMEEVK FT INIHSYQRSAEGLRSVKDSFESSIFRTKLLRGNPTGKITKRIETLLDNVRVLQQVHAKL FT EMIAYSGGEKVNMDKKSVDELNEIVELQSKNSLTAEELARILHLTKPTSTFFNLFAERG FT RQMLVTLLVMVAASLMYLVFWVSPRKQDDITIEGKGRAYNRDKRMGYDSYEEDEVRNKI FT NKKFKERSTRFSNDSKPETNSKYRNLKQEFVNFYDLKTDANVLQAVFTAMDGAVLLQTE FT SPMADIGRVNKLLQDHFGDSESRAVHEGLNTMVKCHLTMKDGRQFELDMEQHDPEYVAK FT LGGEVGFRMNRDDLRQVGATRYINPRAQTSAATLEGMTMKPMSSFTIDSAKMVGFIKTA FT KDTLNCILYGDWIIAPAHIQQGEGDITFIFQHIQFTTTTERLASYGIRQFKGLDLVVIR FT RPQQIRAVKKDMRASILDTPTEIQMLYLSVKGGKYQVSTSAVCFPHYNNRWGHVISTAE FT GMCGCIVFDPTTNHIVGIHVSYNDTRRRNEFQAFTSDVLTTINAPGHEIPFSPWVFDWK FT FCGYTTKPRNMQSAPSTLERLNINATGFGFKLNAQEIKPAMLRSTESFSREFPNTQFKL FT IGEVKKGLIDKHTITGENPYFLEFLNTFKPYQWVQAFMDEYAPSILAYDAYFKDLKKYD FT RPPHAKAFCQNTLTKAKNKMINILEEAGMGRTLVRTTEQVLLDMAWTTSGGPLYHGKKI FT DIVQHLSDDELVQFSEACQQALITGTLDGVWNGSLKAELRSSQKILERKTRVFTAAPIT FT SLIAMKYYVDDFNKQFYKTHLKAPHTVGINKFNRGWQNLYEKLNKPGWTHGSGDGSRFD FT SSIDGFLFDVIKDIRKHFMDAEHHKELDTINEEIVNTKICLANGLIIQKNCGNNSGQPS FT TVVDNTLALMTAFLYAYARLTGDHAFELMDENFVFVCNGDDNKFAMSPSFMTKFGCDFS FT PFLSELGLTYEFDEATEDICENPYMSLTMVRTSFGIGFSLSIERIVAILQWSRAGGVLH FT AYLSGIAALFESFNTPKLFNLVHTYLLWLITEHEEELFSMMELKDMFMPLPTKEQIALL FT HYVGTEPIVEDTFLQAGHEEPDPIVPPASDTDLTNMAAAPPDNRRSRAVIPRGTSDWSM FT PEPTMRTLGFKSKIKIETLADVPEGYMNTFASVATESQRRKWEEATRGDFGITDDEKWE FT KLLIAACIYFADNGTSPNFDEELTMEVNSGLNSIKEYPVRPFVVRAKKISTLRRIFRCY FT SIETKLMFVKLRRVPHWAIKHGCLDEIVFDFMIPDQFTSRTALETLKQTKLAAIGVGTS FT NSLLTSEQTNMRTTETRRRNDYDGHEALLR" FT mat_peptide 1024..1224 FT /product="6K1 protein" FT /note="putative" FT mat_peptide 1225..3198 FT /gene="CI" FT /product="helicase" FT /note="putative" FT mat_peptide 3199..3390 FT /product="6K2 protein" FT /note="putative" FT mat_peptide 3391..3927 FT /gene="NIa" FT /product="viral protein genome-linked" FT /note="putative" FT misc_feature 3568..3570 FT /gene="NIa" FT /function="covalent binding to viral RNA" FT /note="tyrosine residue; putative" FT mat_peptide 3928..4566 FT /gene="NIa" FT /product="proteinase" FT /note="putative" FT mat_peptide 4567..6168 FT /gene="NIb" FT /product="RNA polymerase" FT /note="putative" FT mat_peptide 6169..6921 FT /product="capsid protein" FT /citation=[1] FT /experiment="experimental evidence, no additional details FT recorded" FT 3'UTR 6922..7261 FT /note="putative" FT /citation=[1] XX SQ Sequence 7261 BP; 2066 A; 1888 C; 1601 G; 1706 T; 0 other; aaaataaaac ttcaatacaa cccaatacaa acaacgaaca acaaacaacg aatttgcaac 60 ttaccacagc aatatcgacc gctagtaaca gtttaaccaa actcaacaac aaatcatcct 120 tcgaccaaac gaactctgac catcgagatg gaggagttca ttcctgaagt gttctaccag 180 aaccaggttc agagtcttaa gaaaattctc aaatcctgga aacgcgacac ttctatttac 240 gcgtatcttg ctcgcgagca agaggtccta gccttccttg tactgagtcc cgcacacatt 300 gccaaattga acaaactact cactgaggag tctgcacgat gtgccctgct tgcccagaac 360 tgtgaaacca tcgaagctct ggccgttgtt cggcaagccc tgcagggtgt cacgctacac 420 tttggtgata atggcatgga gaaaggctgg ttgcatatga tgaaagcact tgatgcatgt 480 cttgacgaaa gcttcagcga gaacgccgcc gcactcaaga aaagcattca ggcggttggc 540 cacaagctca tcgcagcaaa aaaccgcatc gaaagctgcg agcgatctgt gaatcacctt 600 acaacgttcc aatttgctcg cgaatatggc ttaagtacca catacttcga aaaattatcc 660 aatttcggtg ggcatattcg aagttttgtg tggtccagcg actcaggaga aattttccca 720 aaacttaaaa gatcatcacg tacgaggcgc atctcgacat tcacgagcta ctactggggt 780 gagttctggt gcaactgcat ctggttcctc tgctgctgtt ggtctcccgc gcgctggtgt 840 tttaattctg cagtttccat atggagtcta tgtggcgttt taaacttatc tatgattgtt 900 ctacagtttg ctcttaagcg tcattttggt agatactatt ttcgatacat aatgtctggt 960 gtcctagcta tttgcgccgt gtgttgtgtt catcttaaaa acagaaaagg gcctatattg 1020 caagcctccc aaaaagataa gcgtttcatc ggaattttag ctttctgcat tactgttata 1080 tacatgtttg atgttgatct agccgactca cttagcaata atcttcacaa gatctctcgc 1140 cttgtgaatc ttttccttga cgataaccgc ggattcgcaa cacccgcttt cgacaaccta 1200 acggacttca caacaattct tcaaagtgga acatcaagtg acgacctaaa gattgtccag 1260 gatacgttgg ctgtggtttt acaagtcgac gaagaggacg caactcagga tgacgcaata 1320 tatgattccg atggacttca aactttcaag caatgggtct ctcacaacca actagccgga 1380 atgcagcttg cacgcccgtt acaatacccg tgctcgaaca cctatggcct gaccgcagat 1440 aacgtcgcag aactagcaac tagcatggca caggaggcaa agcagtggtc acaagttgtt 1500 ggacacactg gttccgggaa gtccacacga ctaccaactg catacgccaa ctgtttgaaa 1560 ggcttagctg ggcgaaagaa aaacgttctc gtttgtgaac ccactagagc tgcaaccgtc 1620 aatgtaacca gtggcatttc acagaatttt ggtaggcttg tttacggacg gcatgaaggc 1680 tggagtaacc ttggcgacaa aacaatacaa gtcatgacat atggttctgc actcgcagcg 1740 tggaaagtcg acaacaaatt cctaagccag tttgacgcag tgtttctcga cgaatctcac 1800 ctcatcacca cgcacgccct tgtctttgag agcatctgcc aggaggttac aaacgtccgc 1860 aagttctatg tgtcagccac accccgcgat ggcaagaagt gtccagaagc cgtgcgtagg 1920 tatgaaatca agactgttaa aaccgagtgc agcagcgtcg acactttcgt tcgaagccag 1980 gagaaggaaa acacgcttta cgttctcaat cacgacaccg tgctcgtttt tctcgctggg 2040 aaggctgagt gcgatagagc agcaagcaac tggaacaagc tgtactcaac caacatgtac 2100 gcgcactccc taacaggtga caattttaca atcgcatatg agaaaattgt cacacgcatg 2160 ctaactgagc gcaccatcgt attctgcaca aatatcctgg aaaccggtgt caccctcaac 2220 gtggactgcg ttgttgactt tggattcacc atgcgtcctg aacttgatct tgttgacaaa 2280 tcgctaacct tgatgcgacg ccgagtcacc gagaacgagc gtgcacaacg catcgggcgt 2340 gcaggaaggc ttagaacagg gtacgcaatc tgcatcggca atcccgaaac gcgccacgat 2400 ctggtgccac cagaaaccct ctacgaggca gcccttctta gcttcgttca cggcgtgcaa 2460 ttctatatca atgagcactt cgagaacgcc tggattcagg gcgtcacaaa gtctcaagcc 2520 tctgtgatga cgcagtttaa gctttccccc ttcctcatgc gtgacattgt tcgtgatgac 2580 ggtgcaatac cactatcact ccacaagata ctcaaggact acacgcaccg caacactgat 2640 ctgataggaa caaaactctc cgtcatgtcg catatctaca actcgtggcc tctctaccgg 2700 acagtgcaac aatccatttc tcgtggagat tctaatgttc cgcaagcgct cagatacgca 2760 cgcgttcctt tcaacgtcag cactgcccat gattttccat gggaagattt cgcacaggca 2820 tgccttgagt tccagccacg tgttcttcag gtcttcagtg acaacagcag cacttcgcgc 2880 ataatcaacc tacagattgg caagatgcac atcatcaatt ccatggaaga agtcaagata 2940 aacatacaca gctatcagcg ctctgcagaa ggcctacgct cagtcaaaga cagctttgag 3000 agctcgatct ttcgaacaaa actgcttcgt gggaacccaa ctggaaagat aaccaagcgc 3060 attgagactc tccttgataa cgtgcgggtg ctacaacagg tgcacgcaaa actagagatg 3120 attgcatact caggtggaga gaaagttaac atggacaaga aatcagttga cgaactcaat 3180 gagatcgtcg aactccagag caagaattca ctcactgccg aagaactagc acgcatattg 3240 caccttacga agcccacctc cactttcttc aatctttttg ctgaacgcgg ccgacaaatg 3300 ctcgtcactc tcctggtcat ggttgccgcc tcgctcatgt atcttgtttt ctgggtttcc 3360 ccaaggaaac aagacgacat taccattgaa ggaaaaggta gagcatacaa tcgtgacaag 3420 cgcatggggt acgactccta cgaagaggac gaggttcgca acaagatcaa caagaagttc 3480 aaagaacgca gcacaaggtt ctccaacgat tccaaaccgg aaacaaactc aaaataccgg 3540 aatctgaagc aagagtttgt taatttctat gatcttaaaa ctgatgcaaa cgtactacaa 3600 gctgtgttca ctgcaatgga cggagccgtt cttcttcaaa ccgaatcgcc aatggcagat 3660 attggccgtg tcaataaact gctgcaagac cactttggag atagtgagag ccgagccgtg 3720 catgaaggtc tcaacaccat ggttaagtgc cacttaacta tgaaagatgg aagacagttt 3780 gagctcgaca tggaacagca tgatcccgag tatgttgcca aacttggagg tgaagttggt 3840 ttcagaatga acagagatga tctacgccaa gttggcgcca cacggtacat caacccaaga 3900 gcacaaacat ccgcagcgac gctcgaaggc atgaccatga aacccatgag ctctttcacc 3960 attgatagcg caaagatggt tggcttcatc aagactgcaa aagacacact caactgcatc 4020 ctctatggcg actggatcat agctcctgcg cacatacaac agggcgaagg ggacataaca 4080 ttcatctttc agcacataca gttcacgacc acaactgagc gcttagccag ctacggcatc 4140 cgacaattta aaggccttga ccttgttgtc atccgacgcc cccaacagat acgcgcggtt 4200 aagaaggaca tgcgtgctag cattcttgac acacctactg agatacagat gctatatttg 4260 tcagtaaaag gcggcaagta ccaagtgtcc acgtccgctg tgtgctttcc acactacaac 4320 aaccgatggg gacatgtcat ttcaacggct gaaggtatgt gcggttgcat tgtatttgac 4380 cccacgacta atcacatcgt tggaattcac gtctcctaca acgacacgcg cagaagaaat 4440 gagtttcaag ctttcacaag tgacgttctg acaacgatta atgcgcctgg acacgaaata 4500 cctttcagcc cgtgggtctt tgactggaag ttttgcgggt acacgacaaa accacggaac 4560 atgcaaagcg caccgagcac gcttgagaga ctcaacatca acgccacagg tttcggtttc 4620 aagctcaacg cacaggagat caaacctgcc atgctacgct ccacagagtc gttctccagg 4680 gagtttccaa acacacagtt caaacttatc ggtgaagtga agaaaggact catcgacaaa 4740 cacacgatta caggagagaa tccctacttc cttgaattcc tgaacacatt caaaccatat 4800 caatgggtac aggccttcat ggacgagtac gcaccctcca tccttgccta tgatgcgtat 4860 ttcaaggact tgaagaaata cgataggcca ccacatgcaa aagctttctg ccagaacaca 4920 ttaaccaaag ctaaaaacaa gatgatcaac attctcgaag aggcaggcat gggaaggacc 4980 ctagtacgaa ccaccgagca agtcttgctt gacatggcgt ggactacctc tggtggacca 5040 ttataccatg gtaagaagat tgacattgtg caacacttgt ctgatgacga gcttgtacaa 5100 ttcagtgaag cctgccaaca ggctctcatc actggaacgc tggatggagt ctggaacgga 5160 tcactcaaag ccgaactgcg ctcttcgcag aaaatccttg aacggaaaac tcgtgttttc 5220 actgctgccc ccatcacaag cctaatcgca atgaaatatt atgtggatga tttcaacaag 5280 cagttctata aaacccacct caaagcacca cacacagtcg gcatcaacaa gtttaaccgc 5340 ggatggcaga atctctatga gaagctcaac aaacctgggt ggacgcatgg gagcggggat 5400 ggctccaggt tcgatagctc tattgacgga ttcctttttg acgtcatcaa agacatccgg 5460 aagcatttca tggatgcaga acaccacaag gagctagaca caattaatga agagattgtc 5520 aacacaaaaa tatgtctagc aaatggtctc atcatccaaa agaactgtgg gaacaacagc 5580 gggcagccaa gtactgttgt agacaacaca cttgcactca tgactgcttt cctctacgca 5640 tacgcccggc tcactggaga ccacgccttc gaactcatgg acgaaaactt tgttttcgtt 5700 tgcaatggtg acgacaacaa gttcgctatg tcacctagct tcatgacaaa gtttggatgc 5760 gacttctcac cattcctttc tgagctaggg ctaacctacg aattcgacga agccactgaa 5820 gacatttgtg aaaaccccta catgtccttg acgatggtcc gcacctcgtt tgggatcggt 5880 ttctccctct ccatagagcg catcgttgca atcttgcaat ggagccgcgc tggcggagtc 5940 ctgcatgcct acctctctgg cattgcggct cttttcgaat ccttcaacac acccaagctc 6000 tttaatctcg tgcacacata cctcctctgg ctcatcacag agcacgagga ggaactcttc 6060 tctatgatgg aactcaaaga catgttcatg cccctgccca ctaaggaaca gatagccttg 6120 ttgcactacg tcgggactga gcccatcgtg gaggacactt tcctgcaagc agggcatgag 6180 gaaccagatc ccatagttcc accagcctcc gacaccgatc tgacaaacat ggctgcagca 6240 ccaccggaca acagaaggtc acgtgccgtc atcccccgtg gcactagtga ttggagcatg 6300 cccgaaccca caatgcgaac actgggtttt aagtccaaga tcaaaatcga aacacttgct 6360 gatgtccccg aagggtatat gaataccttt gcgtccgttg caactgagtc gcaacgtagg 6420 aagtgggaag aggccacgcg tggcgatttt ggcatcaccg acgacgagaa atgggaaaaa 6480 ttgctcattg ctgcctgtat atactttgca gataatggca cctcaccaaa ttttgatgag 6540 gaactcacta tggaagttaa tagcggtctc aactccatca aagagtatcc cgttcgccct 6600 ttcgtcgtca gggccaagaa gatctccaca ctgcgcagga tcttccgctg ttattccatc 6660 gaaacgaaac tgatgttcgt aaagctgagg cgcgtgccgc attgggccat aaagcacgga 6720 tgccttgatg aaatcgtctt tgatttcatg atccccgacc agttcacctc caggactgca 6780 ctggaaacac tgaagcagac caagcttgcc gccattggtg ttggcacaag caattctctt 6840 ctcacctctg agcagacgaa catgaggacc actgaaaccc gaaggcgcaa tgactacgat 6900 ggtcacgagg cgcttctccg gtagatctct catgcagttt catttccttt caagcagtgc 6960 atttaaatac gcttttaatt acatcaagcg tcaagaattc ctcccgcttg cagcaaatcc 7020 ttaaagggtg gcactttgtg ttatgcaatg gaaaattcag tgacgcaatc aaccatcatt 7080 ggttggtgac aacgcagtac tttctttctt tcacatcaag cgaccagcac atcgcccgct 7140 tacagctaat cctacctgag ggtggcactc tgtgttatgt aatggaatgt gctatctcgc 7200 aaccaaccgt cattggttga tggtgcggct aacacccgcg ctcttgtata ccggaaaggt 7260 t 7261 //