ID L46682; SV 1; linear; genomic RNA; STD; VRL; 1914 BP. XX AC L46682; XX DT 10-APR-1997 (Rel. 51, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 2) XX DE Rice ragged stunt virus autocatalytic protease precurser gene, complete DE cds. XX KW . XX OS Rice ragged stunt virus OC Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; OC Reovirales; Spinareoviridae; Oryzavirus. XX RN [1] RP 1-1914 RX DOI; 10.1007/BF01718292. RX PUBMED; 8893791. RA Upadhyaya N.M., Zinkowsky E., Kositratana W., Waterhouse P.M.; RT "The M(r) 43K major capsid protein of rice ragged stunt oryzavirus is a RT post-translationally processed product of a M(r) 67,348 polypeptide encoded RT by genome segment 8"; RL Arch. Virol. 141(9):1689-1701(1996). XX RN [2] RP 1-1914 RA Upadhyaya N.M.; RT ; RL Submitted (24-SEP-1996) to the INSDC. RL Genetic Engineering for Plant Improvemet, CSIRO, Plant Industry, Cnr. RL Clunies Ross Street and Barry Drive, Canberra, ACT 2601, Australia XX DR MD5; 233bdda2bf22ab16b0da9e878b8d1bbb. XX CC GSDB:S:78238. XX FH Key Location/Qualifiers FH FT source 1..1914 FT /organism="Rice ragged stunt virus" FT /isolate="Thailand" FT /mol_type="genomic RNA" FT /db_xref="taxon:42475" FT source 1..246 FT /organism="Rice ragged stunt virus" FT /mol_type="genomic RNA" FT /clone="MN1341" FT /db_xref="taxon:42475" FT source 7..1319 FT /organism="Rice ragged stunt virus" FT /mol_type="genomic RNA" FT /clone="RR493" FT /db_xref="taxon:42475" FT source 821..1052 FT /organism="Rice ragged stunt virus" FT /mol_type="genomic RNA" FT /clone="RR543" FT /db_xref="taxon:42475" FT source 1589..1914 FT /organism="Rice ragged stunt virus" FT /mol_type="genomic RNA" FT /clone="MNPW18" FT /db_xref="taxon:42475" FT CDS 23..1813 FT /codon_start=1 FT /standard_name="major capsid" FT /product="autocatalytic protease precurser" FT /note="evidence by viral polypeptide sequence, in vitro FT translation and antigen-antibody reaction; self-cleaving of FT 67K to 46K and 26K (possible protease), and further FT processing of 46K to 43K major capsid protein." FT /db_xref="GOA:O09781" FT /db_xref="UniProtKB/Swiss-Prot:O09781" FT /citation FT /experiment="experimental evidence, no additional details FT recorded" FT /func_characterised="identical sequence" FT /protein_id="AAB51456.1" FT /translation="MNTKGFAQKIQRTFHLIHQSHYTPPPNKISTHVEIFSELLTYVDY FT EWQRAAIGASRWVELAAEENEIHIPFNTKDERQVNFLIAIIHVAISLYSNSGVEPFADC FT DLEKILNGDYESSKFDWNVVFDIVLPNDVRLKEKTLKAAVVEEERVEPRPKRREITLGG FT QRPLQTRDVRSDSDLIVLSKLEAYDDVVERPRQNNTDIIIHRLGLAKMNPASNSILPAK FT ISRIITEQVFGAGVNVDYIARPTEGFISLSTATYTVASYFERGIANYDINAVLDNIIDK FT TDQLNTTDTVVELPSIPPEDSSIEVATPSHETFFDINTMIYIIMCCGSITNPMIQRLNG FT IVTRYNTTNYVVSYPDTDDGRKKALAERAVITVDGKYYKCYNDIKADTDKRRILNPAVI FT KEVMISLRHYCGSVIHYRERMEATHISQVFCLLMGICYGGLDTKKIRCRWFEWPAVSNV FT PVTSSYAEFKGSNSGLPPYQCRKFTPRTVMTSFAHWNLWAWMLDLAIDKRMSSDRHLSI FT MKIYVLNAFSHLVLNSSLENSANILGPFPSFSGYTAFTSTSIVRDVSSCQRLAPFLLRM FT FSLVDYVAAAASSEASGSGV" FT mat_peptide 23..694 FT /product="autocatalytic protease" FT /function="autocatalytic cleavage" FT /note="26K" FT /experiment="experimental evidence, no additional details FT recorded" FT mat_peptide 695..1810 FT /product="major capsid protein" FT /note="possibly post-translationally modified product of FT the 46K protein; 43K; putative" XX SQ Sequence 1914 BP; 531 A; 408 C; 451 G; 524 T; 0 other; gataaatctc ccaggaccaa gcatgaatac caagggcttc gcgcagaaga tccagagaac 60 cttccacttg attcaccaga gtcactacac acctccacca aacaaaatat ctacccatgt 120 tgaaattttc tcagaactgc taacatacgt tgactatgaa tggcagaggg cagcgatcgg 180 cgcttcacga tgggttgagt tagctgctga ggaaaacgaa atacacatcc cttttaatac 240 caaggacgag cgacaggtca acttcttaat cgccattatc catgttgcta tttcgttgta 300 ttcgaactca ggagtagagc ctttcgctga ttgtgatcta gagaaaattt tgaatggcga 360 ctatgagagt agtaagttcg attggaatgt ggtgttcgac attgttttgc caaatgatgt 420 aagattgaaa gaaaagacgc ttaaagcagc ggtggttgag gaagaacgtg ttgaacctcg 480 tccaaaacgt agagagataa cgcttggagg acagaggcct ttgcagacta gggatgtgcg 540 ttcggattct gatttgattg ttttgagcaa acttgaggcg tatgatgatg ttgttgaaag 600 accaaggcag aataacaccg acattatcat ccatcgactt ggtttagcca agatgaatcc 660 tgcgagtaat tcaatcctac cggccaaaat ctcgcgaatc atcactgaac aagtatttgg 720 agctggagtg aacgtcgatt acattgccag accaactgaa ggatttatat ctctgtcgac 780 cgccacctac acggtagctt cttactttga acggggcatc gccaattatg acatcaatgc 840 cgtcttggac aacatcattg ataagaccga tcaactgaat acaaccgata ccgtcgttga 900 gctaccatcc attccgccag aggactcgtc aattgaagtg gcgacgccgt cgcacgagac 960 gttctttgat atcaacacca tgatatacat cataatgtgc tgtggaagca tcactaatcc 1020 tatgatccag cgcctaaacg gtatcgtcac cagatacaac acgaccaatt acgtggtaag 1080 ttatcctgat actgacgatg gaaggaagaa ggcattggct gagcgtgcgg ttatcactgt 1140 ggacggtaag tactataagt gctacaacga tatcaaggct gacacagata agcgaagaat 1200 tctcaaccca gctgtcatca aagaggttat gattagtctg cgtcactatt gtggtagtgt 1260 cattcattac agagagagga tggaagcgac tcatattagt caagtgtttt gtcttctgat 1320 gggaatatgc tatggtggct tagataccaa gaagatcagg tgtcgatggt ttgagtggcc 1380 cgccgtatct aacgttccag tcacttctag ttacgcagag tttaaaggca gtaacagtgg 1440 tctgccacct taccaatgtc gcaaattcac accacgaacg gttatgacat cttttgcgca 1500 ttggaattta tgggcgtgga tgcttgattt agcaattgac aaacgcatgt cgtcagatcg 1560 tcatcttagt attatgaaga tttacgtttt gaacgctttc agtcatttag ttcttaattc 1620 ctcattagaa aatagcgcca acattttagg tccttttcca tcgttttcgg gctacaccgc 1680 ttttacatct acatctatag ttcgtgatgt ttcttcgtgt caacgtctag ctccgttcct 1740 actccgcatg tttagtttag ttgattatgt cgcggcagca gcgagttcag aagccagcgg 1800 ttccggtgta tgagagagag ggttgcttta ggtgagacgg cttagcattg cctcatgaac 1860 ttggtcacct gagtggctct caggcctggc actgggcaga gatagaatgg gtgc 1914 //