ID L40905; SV 1; linear; genomic RNA; STD; VRL; 4083 BP. XX AC L40905; XX DT 24-OCT-1995 (Rel. 45, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Cocksfoot mottle virus ORF1, proteinase, RNA-dependent RNA polymerase, and DE coat protein. XX KW coat protein; proteinase; RNA-dependent RNA polymerase. XX OS Cocksfoot mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4083 RX DOI; 10.1094/Phyto-86-391. RX AGRICOLA; IND20577046. RA Ryabov E.V., Krutov A.A., Novikov V.K., Zeleznikova O.V., Morozov S.Y.U., RA Zavriev S.K.; RT "Nucleotide sequence of RNA from the sobemovirus found in infected RT cocksfoot shows a luteovirus-like arrangement of the putative replicase and RT protease genes"; RL Phytopathology 86(4):391-397(1996). XX DR MD5; ba86708491daef0f137ae388fd637a61. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX CC On Feb 14, 1996 this sequence version replaced gi:1032302. XX FH Key Location/Qualifiers FH FT source 1..4083 FT /organism="Cocksfoot mottle virus" FT /isolate="Russia" FT /mol_type="genomic RNA" FT /db_xref="taxon:40979" FT CDS 70..396 FT /codon_start=1 FT /function="unknown" FT /note="ORF1; putative" FT /db_xref="GOA:Q66148" FT /db_xref="UniProtKB/TrEMBL:Q66148" FT /protein_id="AAA87608.1" FT /translation="MCEPPPGFITVQCYTSDDLLTGDSTIVKSIPVRSCFFRQGVEVVL FT FRCESNRHRWSKIRGPVNLTVHCDICEFRETVEIPSLPKGFKVSSDFSYSVTWNCCYSR FT GRTE" FT CDS 429..2135 FT /codon_start=1 FT /product="proteinase" FT /note="putative" FT /db_xref="GOA:Q66149" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q66149" FT /protein_id="AAA87609.1" FT /translation="MGCSVVGNCKSVMLMSRMSWSKLALLVSVAMAAAMTDSPPTLICM FT GILVSVVLNWIVCAVCEEASELILGVSLEATRPSPGRVIGEPVFDPRYGYVAPAIYDGK FT SFDVILPISALSSASTRKETVEMAVENSRLQPLESSQTPKSLVALYSQDLLSGWGSRIK FT GPDGQEYLLTALHVWETNISHLCKDGKKVPISGCPIVASSADSDLDFVLVSVPKNAWSV FT LGVGVARLELLKRRTVVTVYGGLDSKTTYCGTGVAELENPFRIVTKVTTTGGWSGSPLY FT HKDAIVGLHLGARPSAGVNRACNVAMAFRVVRKFVTVENSELYPDQSSGPARELDAETY FT TERLEQGIAFTEYNISGITVKTSDREWTTAEALRVARYKPLGGGKAWGDSDDEDTQETA FT IRPLNCQRAGSLRGSPPLANLSSTRATSGVTKESSIPTACLSDPLESRVAGLEKLCAER FT FTEMFELLSQSSLNSKNSPGQAADRKQKSDRSSSKPEGLKESKRPPICNWQSLTSKPST FT RGPDPAPASAESPGVVKTSSQKSKRSRTRGKSTSKQVPASPSPKSGSATNK" FT CDS 1742..3256 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="putative" FT /db_xref="GOA:Q66150" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q66150" FT /protein_id="AAA87610.1" FT /translation="MPFRSAGKSSCRFREAVCRAVHRDVRAAESEFPELKELAWPSRGS FT KAEIGSLLFQAGRFERVEAPANLQLAITNLQAQYPRSRPRSCFRREPWCREDFVAEIEK FT IAHSGEINLKASPGVPLAEIGVSNQQVIDVAWPLVCEAVVERLHALASVDPRQHDWSPE FT ELVKRGLCDPVRLFVKQEPHSRQKIEQGRFRLISSVSLVDQLVERMLFGPQNTTEIALW FT HSNPSKPGMGLSKASQVALLWEDLARKHQTHPGAMADISGFDWSVQDWELWADVSMRIE FT LGSFPALMAKAAISRFYCLMNATFQLTNGELLTQELPGLMKSGSYCTSSSNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWVNDAPRKYSALGHLCKEYEACPVLPNGDLKEVSFCSHLIS FT KGRAELETWPKCLFRYLSGPHDVESLEMELSSSRRWGQIVRYLRRIGRVSGNDGEERSS FT NESPATTKTQSSAAAWGPPQEAWPVDGASLSTFEPSSGGWFHLEGW" FT CDS 3096..3857 FT /codon_start=1 FT /product="coat protein" FT /note="putative" FT /db_xref="GOA:Q66151" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q66151" FT /protein_id="AAA87611.1" FT /translation="MVRKGAATKAPQQPKPRAQQQPGGRRRRRGRSMEPVSRPLNPPAA FT VGSTLKAGRGKTAGVSDWFDTGMITSYLGGFQRTAGTTDSQVFIVSPAALDRVGTIAKA FT YALWRPKHWEIVYLPRCSTQTDGSIEMGFLLDYADSVPTNTRTMASSTSFTTSNVWGGG FT DGSSLLHTSMKSMGNAVTSALPCDEFSNKWFKLSWSTPEESENAHLTDTYVPARFVVRS FT DFPVVTADQPGHLWLRSRILLKGSVSPSTNL" XX SQ Sequence 4083 BP; 938 A; 1035 C; 1137 G; 972 T; 1 other; nataatagtg cgaagaaaga cacactgtta tcgttcccct cccgaatcag aggttgagaa 60 gtagcttaga tgtgcgaacc tccccctggt tttataaccg ttcagtgcta caccagcgac 120 gatttgttga caggcgattc tacaatcgtc aagtccattc ccgtccgctc gtgcttcttc 180 cgccaaggcg ttgaagttgt tctgttccgg tgtgagtcta acagacatcg ctggtcgaag 240 atcagaggtc ctgtgaactt gacagttcat tgtgatatct gtgaattccg cgaaactgtt 300 gagattccat ccctgccaaa aggctttaaa gtatcaagcg atttctctta cagtgtaacg 360 tggaattgct gctacagccg tggcaggaca gagtagcacc gaggttagtt ggttgagggt 420 gaccaagaat gggttgttct gttgttggaa actgcaagtc cgtgatgttg atgagcagga 480 tgagttggtc aaagctagct ctcctcgtat ccgtcgcaat ggcggcagcc atgacagact 540 ccccacccac tctgatatgt atggggatcc tagtgagcgt ggtgctcaac tggatcgttt 600 gcgcagtatg cgaagaagct tccgagctaa ttctgggggt ttccttggaa gcgactcgtc 660 ctagtcccgg acgggttata ggagagccgg tctttgaccc ccgatatggc tatgtcgctc 720 ctgctatcta tgatggcaag tcgttcgacg tgatcctgcc tatctccgct ctgtcctccg 780 cttcaacaag gaaggagaca gtggagatgg cggttgagaa ctcacgacta cagcctctag 840 agagcagtca aacgccgaag tccttggtgg ctttgtactc gcaagacctg ctatcaggct 900 ggggttctcg gattaaaggc cctgatggcc aggaatacct cttgacagcc ctgcacgtgt 960 gggagactaa catctcccat ctttgtaagg atggaaagaa ggtaccgata agcggatgcc 1020 caatcgttgc aagctccgct gattcggact tggactttgt ccttgtgtcc gtgccgaaga 1080 acgcttggtc tgttttaggc gtcggtgtgg ctcgtttgga attgctcaaa cgccgaaccg 1140 tcgtaacagt ctatggaggc ctagactcaa agaccaccta ctgtggcact ggtgtggcgg 1200 agttggaaaa ccccttccgt atagtcacga aagtgacaac tacagggggg tggtcaggct 1260 ctccactcta ccacaaggac gcaatcgtcg ggttgcactt gggagcgaga ccatctgcgg 1320 gggtcaatag agcgtgtaac gtagctatgg ccttcagggt tgtgcggaaa ttcgtcactg 1380 ttgaaaatag tgagttatat cccgaccaaa gcagtggacc cgcccgagag cttgatgccg 1440 agacatacac ggaaagatta gagcaaggaa ttgcttttac cgagtacaat atatctggca 1500 ttacggtgaa aacctccgac agagagtgga ctacagctga ggcgttgcgt gtcgcaagat 1560 acaaaccctt gggtggagga aaagcatggg gtgatagtga tgacgaggac acccaggaaa 1620 ctgcaatccg gcctttaaac tgccagcggg cgggctccct acggggcagt ccgcccttgg 1680 ccaacttatc gagtacgcgg gctacgtctg gcgtgacgaa ggaatcatca attccgacgg 1740 catgcctttc cgatccgctg gaaagtcgag ttgccggttt agagaagctg tgtgcagagc 1800 ggttcacaga gatgttcgag ctgctgagtc agagttccct gaactcaaag aactcgcctg 1860 gccaagccgc ggatcgaaag cagaaatcgg atcgctcctc ttccaagccg gaaggtttga 1920 aagagtcgaa gcgcccgcca atctgcaatt ggcaatcact aacctccaag cccagtaccc 1980 gaggtcccga ccccgctcct gcttccgcag agagccctgg tgtcgtgaag acttcgtcgc 2040 agaaatcgaa aagatcgcgc actcggggga aatcaacctc aaagcaagtc ccggcgtccc 2100 cctcgccgaa atcggggtca gcaaccaaca agtaattgat gtggcctggc ccttggtgtg 2160 tgaggctgtg gtggaaaggc tccatgcctt ggcatccgta gacccgcgcc agcacgactg 2220 gtctccagag gaactcgtga aaagaggatt gtgtgatccg gttagacttt tcgtcaaaca 2280 ggaaccccat tctcgacaaa agattgaaca aggccgtttt cggcttatct cttctgtctc 2340 gcttgtagat caactggtag aacgcatgct tttcggaccc cagaacacta cagaaattgc 2400 tctgtggcat tctaatccct ctaaaccagg gatgggcctg tcgaaagcta gtcaagttgc 2460 gctgttatgg gaggatttgg cgcgcaagca ccaaacccac ccgggtgcca tggcagacat 2520 ctcagggttt gactggtccg ttcaggattg ggaactctgg gctgacgtat ctatgaggat 2580 tgagctaggc tcgtttccag cgttgatggc gaaagcagca atctcacggt tttactgttt 2640 gatgaatgct accttccaat tgacgaatgg agagctcttg acccaggaac tgcctggact 2700 catgaagtcc gggtcgtact gtacctccag ctccaactcc cgcattcgct gccttatggc 2760 tgagctcatc ggctcgcctt ggtgtatcgc aatgggagat gattctgttg agggatgggt 2820 taatgatgcc cctaggaaat attcagcgct aggccatctc tgtaaagagt atgaagcgtg 2880 tccagtgctc cccaatggag atttgaagga ggtgagcttt tgctcccatc tcatctcaaa 2940 gggtcgagcg gaactggaaa cgtggcccaa gtgtctgttt cgatatctca gcggaccaca 3000 tgatgtggaa agcttggaga tggagctaag ctcttctcgc cgctggggcc agatcgtcag 3060 ataccttcgc cggattggcc gggtctccgg aaatgatggt gaggaaagga gcagcaacga 3120 aagccccgca acaaccaaaa cccagagctc agcagcagcc tgggggccgc cgcaggaggc 3180 gtggccggtc gatggagcca gtctctcgac ctttgaaccc tccagcggcg gttggttcca 3240 ccttgaaggc tggtagaggc aagactgctg gtgtgagtga ctggtttgat accggtatga 3300 tcaccagcta tctgggcggt ttccagcgca cagctgggac cactgactcc caagttttca 3360 ttgtgtcacc cgctgctttg gaccgtgttg gaaccatagc caaggcgtat gcgttgtgga 3420 gacctaagca ttgggaaatc gtgtatctcc ccagatgttc tactcagaca gatgggtcga 3480 ttgaaatggg atttctctta gattatgcgg atagcgtccc aaccaacacc cgaactatgg 3540 cctcctctac ctccttcaca acttcaaacg tgtggggagg tggggatggc agcagcttgc 3600 tgcacacgtc catgaagtcc atgggcaacg ctgttacgag tgctcttccc tgtgacgagt 3660 tctcgaacaa gtggtttaag ttatcttgga gcactcctga ggaatcggag aacgctcatt 3720 tgactgacac ctatgttccg gcgcgcttcg tggtgaggtc tgacttcccg gtagtcacgg 3780 ctgaccaacc tggtcatctt tggcttcggt ccaggatctt gctcaaggga tcggtttccc 3840 cttctacaaa tctgtagtta agtaccgcag ggatggcaaa cctgtataac agtgcccgcg 3900 cttggtggag tcgcgtttgt ccacttggaa atctaactcc aaagctttgc ttgaagattg 3960 acggattggt atcatctccg taaggatacc gaccactggc tgggctcgtc acccctcctt 4020 tgtgtctcac aaacgacgaa tctgcgctcg gcaaatgaca ggatcatggc cggggcaggt 4080 gct 4083 //