ID L39638; SV 1; circular; genomic DNA; STD; VRL; 2705 BP. XX AC L39638; XX DT 04-MAR-1995 (Rel. 42, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 6) XX DE Panicum streak virus - Karino, complete genome. XX KW . XX OS Panicum streak virus - Karino OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2705 RX DOI; 10.1007/BF01309454. RX PUBMED; 7826215. RA Rybicki E.P.; RT "A phylogenetic and evolutionary justification for three genera of RT Geminiviridae"; RL Arch. Virol. 139(1-2):49-77(1994). XX RN [2] RP 1-2705 RA Fyvie M., Schnippenkoetter W.H., Hughes F.L., Rybicki E.P.; RT "Complete nucleotide sequence of a novel strain of panicum streak virus"; RL Unpublished. XX RN [3] RP 1-2705 RX DOI; 10.1007/s007050170107. RX PUBMED; 11504417. RA Schnippenkoetter W.H., Martin D.P., Hughes F.L., Fyvie M., Willment J.A., RA James D., von Wechmar M.B., Rybicki E.P.; RT "The relative infectivities and genomic characterisation of three distinct RT mastreviruses from South Africa"; RL Arch. Virol. 146(6):1075-1088(2001). XX RN [4] RP 1-2705 RA Rybicki E.P.; RT ; RL Submitted (12-FEB-1995) to the INSDC. RL Department of Microbiology, University of Cape Town, Rondebosch, South RL Africa XX DR MD5; f8c79b8f6a35bc166f07372389b80050. DR EuropePMC; PMC2886952; 18753214. DR EuropePMC; PMC4148390; 25166274. XX FH Key Location/Qualifiers FH FT source 1..2705 FT /organism="Panicum streak virus - Karino" FT /strain="Karino" FT /mol_type="genomic DNA" FT /clone="pKom100" FT /note="infectious clone; a clone of apparently full-length FT replicative intermediate DNA was dimerized in an A. FT tumefaciens vector and injected in A. tumefaciens into FT sweetcorn to produce symptoms; typical particles were seen" FT /db_xref="taxon:268779" FT misc_feature join(2563..2705,1..144) FT /note="long intergenic region (LIR)" FT misc_feature join(2699..2705,1..2) FT /note="nonanucleotide sequence conserved in all FT geminiviruses" FT gene 145..468 FT /gene="V1" FT CDS 145..468 FT /codon_start=1 FT /gene="V1" FT /product="movement protein" FT /note="putative" FT /db_xref="GOA:Q84368" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:Q84368" FT /protein_id="AAA62263.1" FT /translation="MDASSTTPFPFPQPPRVPSAAPVAGALPWSRVGEIVIFTFVSVLG FT LYLLWLWVLKDCILLLKAQRGRSTEELIFGPGERPAVASADGSRSVPDPSPSCPPGPRP FT FVV" FT gene 479..1225 FT /gene="CP" FT CDS 479..1225 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q84369" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:Q84369" FT /protein_id="AAA62264.1" FT /translation="MSGALKRKRSDEVAWSRRKPVKKQDTGFPLPRAGPSVRRGLPALQ FT IQTLTAAGDTMITVPSGGICSLIGTYARGSDEGNRHTNETLTYKVALDYHFVATAAACK FT YSSIGVGVMWLVYDAQPTGNSPEVKDIFPHSDTLSAFPYTWKVGREVCHRFVVKRRWCF FT TMETNGRIGSDVPPANTAWPPCKKDIYFHKFCTGLGVKTEWKNVTDGKVGAIKKGALYI FT VIAPGNGLEFTVHGQCRLYFKSVGNQ" FT misc_feature 1226..1411 FT /note="short intergenic region (SIR)" FT gene complement(1590..2564) FT /gene="RepA" FT CDS complement(1590..2564) FT /codon_start=1 FT /gene="RepA" FT /product="replication-associated protein" FT /db_xref="GOA:Q84370" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q84370" FT /protein_id="AAA62265.1" FT /translation="MSTSLSITSDGRHSVRSFRHRNANTFLTYSKCPLEPEFIGEHLFR FT LTKDFEPAYILVVRETHQDGTWHCHALLQCIKPVTTRDERYFDIDRYHPNIQSAKSTDK FT VREYILKDPKDKWEKGTYIPRKKSFVPPGKENSEKKPSKDEVMKEIMTHATSRAEYLSL FT VQTSLPYDWATKLSYFEYSASRLFPDIAEPYSNPHPATDPDLLCNETLQDWLEPNIYQV FT SPKAYMLLEPSCLSLEQAKADLEWLSETTRLFQEQESEASTSSAQHGQVKHPGPEASDG FT TTTGRITSTGLHTMKKLRTMSWTTFPSSSVRAGSSSSAVKKTT" FT mat_peptide complement(1758..1817) FT /gene="RepA" FT /standard_name="RepB protein" FT /product="replication-associated protein" FT /note="putative" XX SQ Sequence 2705 BP; 558 A; 713 C; 731 G; 703 T; 0 other; accgctcaca ccccatgcga gccacggccc tgtgtggcga gcggtccccg gatgttctta 60 ccccggtgcg atttctttag ctgcgtgttc tttagcagct gcccccactg tcctataagt 120 tgctccccgg tgcgattccg catcatggat gctagcagca ccactccttt tcctttccct 180 cagccgcctc gggtaccctc tgcagctccg gtcgccggag cgctgccgtg gagtcgcgtc 240 ggtgagatag ttatctttac ctttgtttca gtgctaggcc tttacctgct ttggctttgg 300 gtgctcaaag attgtatctt acttctgaag gctcagcgag gtagatccac ggaggagctg 360 atctttggtc ctggtgagag gccagccgtc gcttctgccg acggttctcg ctccgttcca 420 gatccgtctc cgtcctgtcc gccgggacct agacctttcg tggtctagag cactcagcat 480 gtccggagct ttgaagcgca agcgttcgga tgaggttgcc tggagtcgaa ggaagcccgt 540 caagaagcaa gacaccgggt tccccctccc ccgggctggc ccctctgtca ggagaggact 600 ccctgccctt cagatccaga cgcttacggc ggctggtgac actatgatca cggtgccgtc 660 cggcggcatc tgcagtctga ttggcacgta tgcccggggc tctgatgaag gtaaccgcca 720 caccaacgag actctgacgt acaaggttgc gctggactac cacttcgttg ctactgctgc 780 ggcctgcaag tactccagca ttggagtggg tgtcatgtgg ttggtgtatg atgcgcagcc 840 gaccggcaat tcaccggagg tgaaggacat cttccctcac tccgatacgc tctcagcgtt 900 cccgtacact tggaaggttg gcagggaggt ctgccatcgc ttcgttgtta aacggcgctg 960 gtgcttcacc atggagacta acggccggat cggttcagat gtgcctccgg ccaataccgc 1020 ttggccgcct tgcaagaagg acatctactt ccacaagttc tgcacgggac tcggcgtgaa 1080 gacggagtgg aagaacgtta cagacgggaa ggtcggcgct attaagaagg gcgccttgta 1140 cattgtcatt gcgcctggaa acgggcttga gtttacggtt cacggccagt gccgtctgta 1200 ctttaagtca gttggtaatc agtgattacc acatcaatta ataaaacaag ttttattcaa 1260 agagcgaagc tcatacatta catagtcagc agatatgctg acagaaaaca cacacatagt 1320 gcagcctcgg gctaaagacc gagtctcaaa cgacccaact taaaaacaaa tcaaaacaag 1380 catgatatta ttaaatatgc agccgccggc ttaagcagga gtgaaccact tctctcctgc 1440 ctgcattacg tagatttcgc agtttgcgta gaagtagtca tactgcgccg gagtcatgtc 1500 cttcagccag tcctcatcct cgttggcgag gatgatagtt ggtatgctct ttgaggccac 1560 cttccgtctc ttcccgtact tcgggttcac tatgtagtct ttttgacagc cgacgagctg 1620 cttccagcac ggacagaact tgaagggaat gtcgtccacg acattgtacg cagcttcttc 1680 atcgtatgaa gaccagtcga tgttattctg ccagtagttg tgccgtccga ggcttctggc 1740 ccaggatgtt ttacctgtcc gtgttgggcc gacgatgtag aggcttcgct ttcttgctcc 1800 tggaataatc tggttgtttc agacaaccat tctaagtcag ctttggcttg ctctaggctt 1860 aagcagctag gttcaaggag catgtatgct ttaggactga cctggtagat gttaggctca 1920 agccagtcct ggagtgtttc gttgcagagg aggtcagggt cagtggcagg atgaggattg 1980 ctgtaaggct ctgcaatgtc cgggaacagg cgactagctg agtactcaaa gtatgacagt 2040 tttgtggccc agtcgtaagg cagtgaagtc tgcactagtg aaaggtactc tgctctgcta 2100 gtggcatgtg tcatgatctc cttcatgacc tcatccttag aaggcttctt ctcagagttt 2160 tccttacctg gaggaacgaa gctcttcttc cttggtatgt aagtaccttt ctcccacttg 2220 tccttgggat ccttcagtat gtactcacgt accttgtcag tgctcttggc gctctgtata 2280 ttcggatgat accgatctat gtcaaagtac ctctcgtcac gagtagtgac aggcttgatg 2340 cactggagaa gagcatggca gtgccatgtt ccgtcttggt gagtctctct cactaccagg 2400 atgtatgctg gctcaaagtc cttagtgagc ctgaagagat gctcaccgat gaactcaggt 2460 tctagtggac acttgctgta tgtgaggaag gtgttcgcgt tccggtgcct gaaggaccgg 2520 acgctgtgcc tgccatctga ggtgatagac agagaggtcg acattagcgc aggaggttgg 2580 gcaatctcag gctctcctca gctctatccc tagacagctg cgaaataatc cgcccacccc 2640 ccgtgccttt tatagctgct tggtgggctg ggccggccgg catggggtgt gagcagcata 2700 atatt 2705 //