ID   L38900; SV 1; linear; genomic RNA; STD; VRL; 1132 BP.
XX
AC   L38900;
XX
DT   26-JAN-1996 (Rel. 46, Created)
DT   29-MAY-2003 (Rel. 75, Last updated, Version 4)
XX
DE   Rice ragged stunt virus 38 kDa spike protein gene, complete cds.
XX
KW   .
XX
OS   Rice ragged stunt virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Oryzavirus.
XX
RN   [1]
RP   1-1132
RX   DOI; 10.1007/BF01322684.
RX   PUBMED; 7503693.
RA   Upadhyaya N.M., Yang M., Kositratana W., Ghosh A., Waterhouse P.M.;
RT   "Molecular analysis of rice ragged stunt oryzavirus segment 9 and sequence
RT   conservation among isolates from Thailand and India";
RL   Arch. Virol. 140(11):1945-1956(1995).
XX
DR   MD5; b6548175bb05cd58bf66a2e744795f66.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1132
FT                   /organism="Rice ragged stunt virus"
FT                   /segment="S9"
FT                   /isolate="India"
FT                   /mol_type="genomic RNA"
FT                   /clone="CS1163; CS1165; CS1170"
FT                   /note="RT-PCR cloning was used"
FT                   /db_xref="taxon:42475"
FT   CDS             14..1030
FT                   /codon_start=1
FT                   /product="38 kDa spike protein"
FT                   /note="structural protein; Changes in nt 524 (G to A) and
FT                   nt 585 (A to G) from that of RRSV-T (acc# L38899) isolate
FT                   would result in amino acid changes"
FT                   /db_xref="GOA:Q86287"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q86287"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="AAA85466.1"
FT                   /translation="MKTAFARDPFTAPATGTYGTIYASRSLPRLSISKFLEDANPEIYE
FT                   LSRYEALGTNRPSSGKRAMQPAVSKPALLETVFTLDIWYRRTNNQNIGNLRDSVSRFLS
FT                   DDRVREAVMVRLDLDIVVQLKEYWLIVKDKEAQTFADRLAFDSHLFVNRGENANYDLVT
FT                   QTFIPSDTFLKDNFKTEALKKLLLSVQSHTGLDAGLQGDSSKATYNIGLGQYLEDEALL
FT                   YRQGVALQQMAFAELELARGAEKEAFPSTFDLSNRPACNLILKRTCKWYQQTFKAEERK
FT                   EFAKSLWVDDFAEANWNTGNLSFGFSTTLNVIERWRLTRFYVHMYSSVHIYSQKASG"
XX
SQ   Sequence 1132 BP; 341 A; 238 C; 263 G; 290 T; 0 other;
     gataaatctc gccatgaaga ctgcctttgc cagagatcct tttacagctc ctgctacagg        60
     tacgtacgga accatatatg cctccagatc attaccccga ctctctatct ccaaattctt       120
     agaagatgca aatccagaaa tttatgaact atcgagatat gaagcacttg gaaccaacag       180
     acccagctca ggaaagcgag cgatgcaacc agctgtcagt aaaccggctt tacttgagac       240
     cgtattcaca ctcgatatat ggtacagaag gacgaacaac cagaacatcg gcaatttgag       300
     agattcagtg tctcgatttc tatctgacga tcgagtgagg gaagcggtga tggtacgact       360
     agatttagac attgttgtcc agctaaaaga gtactggtta atagttaaag ataaggaagc       420
     ccagactttc gcggaccgat tggcctttga ctcacatcta tttgttaatc gtggcgaaaa       480
     tgcgaattac gatcttgtaa ctcagacgtt cattccgagt gatacttttc ttaaggataa       540
     ctttaaaaca gaagcactta agaagttgtt actaagcgtc caaagccata caggactaga       600
     cgctggatta caaggtgata gttcaaaagc gacttacaac attggcctag gacaatatct       660
     cgaggatgag gccctcctgt atcgtcaagg tgtggctcta cagcagatgg ctttcgcaga       720
     gttggagtta gctagaggag cagagaaaga ggcgtttcca tcaacctttg atctaagcaa       780
     tagaccggct tgcaacctga tccttaagcg aacgtgtaaa tggtatcaac agacgtttaa       840
     agctgaggag agaaaagaat ttgcgaagag tttgtgggta gacgactttg ccgaggctaa       900
     ttggaacaca ggtaacttat ctttcggctt ctcaactaca ttaaacgtaa ttgaaagatg       960
     gcgtttaact agattttatg ttcatatgta ctcatctgtg catatatatt ctcagaaggc      1020
     ctcggggtag gaaacgctgg ggatcaaggt gaattgaaat gaggacttct caccctcatg      1080
     gacattcggc ctcttcacgg gtggcacccc gaaaactgcg agaccatggt gc              1132
//