ID L25658; SV 1; linear; genomic RNA; STD; VRL; 8512 BP. XX AC L25658; XX DT 07-FEB-1994 (Rel. 38, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 5) XX DE Blueberry scorch carlavirus mRNA. XX KW . XX OS Blueberry scorch virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus. XX RN [1] RP 1-8512 RX PUBMED; 8151289. RA Cavileer T.D., Halpern B.T., Lawrence D.M., Podleckis E.V., Martin R.R., RA Hillman B.I.; RT "Nucleotide sequence of the carlavirus associated with blueberry scorch and RT similar diseases"; RL J. Gen. Virol. 75(Pt 4):711-720(1994). XX RN [2] RX DOI; 10.1006/viro.1995.1058. RX PUBMED; 7871721. RA Lawrence D.M., Rozanov M.N., Hillman B.I.; RT "Autocatalytic processing of the 223-kDa protein of blueberry scorch RT carlavirus by a papain-like proteinase"; RL Virology 207(1):127-135(1995). XX DR MD5; 018157a32c0b7a8320bc147e364fb105. DR EuropePMC; PMC3689765; 23805334. XX FH Key Location/Qualifiers FH FT source 1..8512 FT /organism="Blueberry scorch virus" FT /strain="NJ-2" FT /mol_type="genomic RNA" FT /db_xref="taxon:31722" FT CDS 59..5962 FT /codon_start=1 FT /note="ORF" FT /db_xref="GOA:Q65652" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR003323" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008041" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/Swiss-Prot:Q65652" FT /protein_id="AAA68984.1" FT /translation="MALTYRSPVEEVLTLFEPTAQSLIASAAVSAFQRHEKDNFEWFRY FT SVPAFAKEHLSKAGIYLSPYAGFPHSHPVCKTLENYILYVVVPSIVNSTFFFVGIKDFK FT INFLKSRFDKLNMISALNRYVSSADKIRYGNDFVIRAGVEHRALKRHRGLVDSPTLKAL FT MPNVKSGSKLFLHDELHYWSKEELIGFLEICEPEVLLGTVIYPPELLIGSDCSLNPWCY FT EYEVKKKKLLFYPDGVRSEGYEQPLSGGYLLQTSRIKLPNAGIYCVDLLCSRFAHHLFS FT ITRGDLITPDNRSFGPFEAVHSGALAGISRGKPNFYPVSQHTILRVYRYLRSLKKPDKQ FT SAMAKFSQIVHEPCGRAVKFMEEFSDLIINTGTLRTVINPEQVKLFFGNLGRCMPPCFA FT SKLKGTRTVCLDEFISMLRPLSVDVTLETISMHSMTMVVTTWSQEAEEGVDLPKIFEEK FT WEGKQSLDRTEAPYLGLAPFVDYKIQWRLQFNIPKFLNQLAELFVNSCSVNGGVRSMSI FT PAYLRRLATCRSCVGRAMLCCLTEVDIASLRVVVRNRYPYTEDFYRCRRRWFLRIGAQR FT RPSFYIEDAKHLERLGQFEEEQFQRPMSRRSLYTLASVSMNGTDDPFCSDCFYDPVPVA FT RAKIVPTPTVIVERALEPLAIDTGTTSDAPCDAPGATCLRGAQAVVCACGLSMAVSAVP FT YAELKMDFYPDALKGRDAAWYSKEDREYKYNGGSHLCRGWPKWLQLWMQANGVDETYDC FT MLAQRYGAQGKIGFHADNEEIFMRGAPVHTVSMDGNADFGTECAAGRQYTTLRGNVQFT FT MPSGFQETHKHAVRNTTAGRVSYTFRRLAKKDESRVIEEVVEVETKDMGFSSSLFGVQI FT IVDEPCDGVEETFNVQCVPGDGNCFWHSLGSFTGLTVECMKAGIKNFACGPEGAEKLSR FT QLEPNVWAEDEALCAACAHLGVDLVIFDEDQGFKMLYRYPGNKREALLRLKGSHFEPLE FT PKEMCVVKAIAQAVKRSPMDVLRVALKKMGEDFKEQICRGKGVMLDVFMVLAKIFDVSA FT CVLQGTEQIMINPKGRIKGLFRMTTDHLSYDGVPDKVKHSEVNVYKHDVALQIEDLIEL FT RELSSLVEYTPSFSRAKLLADCLHDGSTGVMCSELYNDKGHLCPEGRETTRVTIGVLLG FT TFGCGKSRLFKEILFKLCGKSVCYISPRKALCDSFDDEIRKARGNMGERGIKHYKSLTF FT EKAILQASKLHKGSLVIIDEIQLYPPGYLDLLLLLAGPTMKYFALGDPCQSDYDSEKDR FT TILGSVRSDVFELLDGIEYKFNILSRRFQSSLFRGRLPCLMYEEDLEAGAPLRLIDGLE FT SIDTSAAYSRCCLVSSFEEKKIVNAYFGERTKCLTFGESTGMTFDVGCVLITSISAHTS FT EQRWITALSRFRKDIVFVNAASVAWDTLQSVYANRWLGRFLNRSARQEDLRRMLPGTPL FT FVEGFQKNLLGADEGKRECKLEGDPWLKTMVDLLQVEDMEDIEIAKEVLQDEWCKTHLP FT QCELESVRARWVHKILAKEFREKRMGCLVSEQFTDQHSKQMGKHLTNSAERFETIYPRH FT RAADTVTFIMAVRKRLSFSCPIKESAKLNQALPYGPFLLKEFLKRVPLKPMHDRKMMEQ FT AKFDFEEKKTSKSAATIENHSNRSCRDWLIDVGLVFSKSQLCTKFDNRFRDAKRAQTIV FT CFQHAVLCRFAPYMRYIEKKLNEVLPSKYYIHSGKGLEELNRWVIEGRFEGVCTESDYE FT AFDASQDHYIVAFEICLMRYLGLPNDLIEDYKFIKTHLGSKLGNFAIMRFSGEASTFLF FT NTMANMLFTFLQYDLKGNERICFAGDDMCANGRLHVSSKHKNFMSKLKLKAKVSNTMNP FT TFCGWNLSSDGIFKKPQLVLERLCIAKETNNLANCIDNYAIEVSFAYLMGERAKQRMDE FT EEVEAFYNCVRIIVKSKHLLKSDVATIYQTARVD" XX SQ Sequence 8512 BP; 2140 A; 1781 C; 2295 G; 2295 T; 1 other; ntaaacactc ccgaatatac ctgaatataa acaacccgac gttcatattc aagtacatat 60 ggcactcaca tacagaagtc cagtcgagga agtgttaaca cttttcgagc ccacagctca 120 atcactaatc gccagtgcag cagtctcagc cttccagaga catgagaagg ataacttcga 180 atggttccgc tacagtgtac ctgcttttgc taaggagcac cttagcaagg cgggaatata 240 cctcagccca tacgcaggtt ttccgcattc tcatcccgtc tgcaagacat tagagaatta 300 tatcttgtat gtagtagtac ctagtatagt taatagtacc tttttttttg ttggcattaa 360 ggattttaaa atcaatttct tgaagagtag attcgataag ttaaatatga taagcgcttt 420 gaataggtat gtcagtagcg cagataaaat taggtatggt aatgatttcg tcattcgcgc 480 tggtgtggaa catcgtgcat tgaagaggca tagaggctta gttgattcac ctacactgaa 540 ggcgctgatg cccaatgtga agagtggttc taaattgttc ttgcatgatg aattacatta 600 ttggagcaag gaagaactaa ttggcttcct tgagatctgt gagccagagg ttcttttggg 660 cacagtaatt tacccgccag aattgttgat cggttccgat tgctcgctca atccgtggtg 720 ctacgagtac gaggtgaaga agaagaaatt attattctac cctgatggcg tgaggagtga 780 aggctatgaa caacctttga gtggaggtta tctactgcaa acgtctcgaa tcaagttgcc 840 caatgcgggc atttactgcg ttgatctgct ctgcagtcgt tttgcgcacc acctcttttc 900 cataactaga ggggacttga tcacacctga caaccgctct tttgggccat tcgaggcagt 960 tcatagtggt gctttagctg gtatctcacg tggaaaaccc aacttctacc ctgtgtctca 1020 gcacactata ctccgtgtgt acaggtatct ccgttcttta aagaagccgg ataagcaatc 1080 tgccatggct aaattctctc agattgtgca cgaaccatgt gggcgagccg tgaaattcat 1140 ggaagaattc agtgatttaa tcatcaacac tggaacattg cgcactgtga ttaacccaga 1200 gcaggttaaa cttttttttg ggaatttagg ccgctgtatg ccaccctgct ttgcttctaa 1260 gcttaaagga actcgcacgg tttgcttgga tgagttcatt agcatgttga gacccttgag 1320 tgtcgacgtg actctcgaaa caatttctat gcactctatg acaatggtgg tgacaacgtg 1380 gtcacaagaa gcagaagagg gtgtggacct accaaagatt tttgaagaga agtgggaagg 1440 aaagcaatct ttggatcgca ccgaagcacc ttacttgggt ctagcaccgt ttgttgatta 1500 caagatccag tggcgtctgc agttcaatat acccaagttt ttaaatcagc tagctgagct 1560 gtttgtcaac tcttgcagtg ttaacggagg tgtgaggtca atgtccatac ctgcatactt 1620 gaggagactc gcaacttgcc gcagttgtgt cgggagggca atgctgtgct gcctaactga 1680 ggtggacatt gctagtttga gggtggttgt gcgtaaccga tacccgtaca ctgaggactt 1740 ttacagatgt agaagacgtt ggttcctgcg catcggcgct caacgtcgcc cgtcctttta 1800 cattgaagat gcaaagcatc tggaacgact agggcagttc gaagaggagc agttccagcg 1860 tccaatgagt aggaggagcc tctacacgct tgcgagcgtc tctatgaatg gcacagatga 1920 tcctttctgc tccgattgtt tctatgatcc agttccagtt gcgcgtgcga agatagtgcc 1980 cactccgacg gtgatagtgg aaagagccct ggagcctttg gctatcgata cgggaacaac 2040 ttctgatgca ccttgcgatg cacctggtgc tacgtgccta agaggtgcac aagccgtagt 2100 gtgtgcttgt ggcttgtcca tggcggtgag cgctgtgcct tatgctgagc tcaaaatgga 2160 cttttatccc gatgctttga aaggtagaga cgctgcttgg tactccaagg aggacaggga 2220 gtacaaatac aatgggggtt cgcatctatg taggggttgg cccaaatggt tacagttgtg 2280 gatgcaggcc aatggcgttg atgaaaccta cgattgtatg ttggcgcagc ggtacggcgc 2340 acaagggaag atcgggttcc atgcagataa cgaagaaatt tttatgcgag gggcaccagt 2400 gcacaccgtg agtatggatg gtaatgctga ttttggcact gagtgcgctg cgggcaggca 2460 gtacaccaca ttgcgcggta atgttcagtt caccatgcca agtggtttcc aggagaccca 2520 taaacatgcg gtgcggaaca cgacagctgg tagggtatcg tacacattta gacggcttgc 2580 gaagaaggac gagtcgcgcg taatagagga ggttgtggag gtggagacca aggatatggg 2640 ctttagttca tcactctttg gtgttcaaat tattgtggat gagccgtgtg atggcgttga 2700 ggagaccttc aatgttcagt gtgtgccggg tgatggaaac tgtttctggc actctttggg 2760 ctcattcact ggtttaacgg ttgagtgcat gaaggcaggc atcaagaatt ttgcatgtgg 2820 gccagaagga gctgagaaat tgagtaggca attggagcca aatgtgtggg cggaggatga 2880 agctttgtgc gcagcttgtg cacatctagg agtagaccta gtcatttttg atgaggatca 2940 aggcttcaag atgctttatc gctatcctgg caataagcgt gaggcgctac ttcgtttaaa 3000 agggagccat ttcgaaccat tggagccgaa agagatgtgc gttgtgaagg ccattgcgca 3060 ggcagtgaag cggtctccga tggatgttct acgtgtcgcg ctaaagaaaa tgggcgaaga 3120 ttttaaagaa caaatctgca ggggtaaggg agttatgctg gatgtgttca tggttcttgc 3180 caagatcttt gatgttagtg cttgcgtgtt gcaggggacg gagcagatca tgattaatcc 3240 caagggtagg ataaagggcc ttttcaggat gacgactgat catctgagtt atgacggtgt 3300 acccgataag gtcaagcaca gtgaggtcaa cgtttataag cacgatgttg ctctccaaat 3360 cgaggactta attgaattgc gtgagttgag cagtctcgtt gaatacacgc cgagcttttc 3420 tagagctaag ttgttagctg actgccttca tgatggctcg accggtgtca tgtgctcaga 3480 gttgtataat gataaaggcc acttgtgccc tgaggggaga gaaaccacac gggtgacgat 3540 tggggtgcta cttgggacat ttggatgtgg caagagccgg ctatttaagg agattctttt 3600 caagctgtgc ggcaagtcgg tgtgctatat atcaccacgc aaggcactgt gcgattcctt 3660 tgatgatgaa atcagaaagg cgcgtggcaa catgggtgaa cgcggtataa agcactacaa 3720 gagtttgacc tttgagaaag ccatcctgca agcgagtaaa cttcacaaag gttctcttgt 3780 gataattgat gagatacagt tgtacccacc aggttacctc gacctactct tattactcgc 3840 agggcctacc atgaagtact ttgcactcgg ggatccatgc cagagtgatt atgactcgga 3900 aaaagatcgt acgatcttgg gcagtgtaag gtctgatgtt ttcgaactat tggatgggat 3960 tgagtataag tttaacatct tgagcagaag gtttcagagt tcactcttcc gtggaaggct 4020 cccgtgcttg atgtatgaag aagatctcga ggctggtgca ccgctgcgac tgatcgacgg 4080 cttggaatca attgatactt ctgctgccta ctcgagatgc tgcctcgttt cttcgttcga 4140 ggagaaaaag attgtcaacg cgtactttgg cgagcgaacg aagtgcctga cgtttggtga 4200 gagcactggc atgacgtttg atgttgggtg cgtgttaatc acctcgatct cagcacacac 4260 aagtgaacag cggtggatta ctgcactcag tcgctttagg aaggatattg tgtttgtgaa 4320 cgctgcgagc gtagcttggg atactttaca gtccgtttat gcgaataggt ggcttggccg 4380 gtttttgaat cgctcagcaa ggcaggaaga tctgcgccgc atgttacctg gtactcctct 4440 ttttgtagag ggctttcaga agaatttgct aggagcagac gaaggtaaac gtgaatgcaa 4500 gcttgagggt gatccctggc taaagactat ggttgattta ctgcaagttg aggacatgga 4560 ggatatcgaa atagctaagg aggtgcttca ggatgagtgg tgcaaaacgc atttgccaca 4620 gtgcgaactt gaatcggtgc gtgcacgctg ggtgcacaag atcttggcca aggagttcag 4680 ggagaaaagg atgggttgtt tagtgtcgga gcagttcact gatcagcatt ctaagcagat 4740 ggggaagcac ctaacgaaca gtgccgagcg gtttgagacc atatatccta ggcatcgagc 4800 agcggacacc gtgactttca tcatggctgt acgtaaacgt ctgagtttct catgtccaat 4860 caaagaaagt gcgaagttga atcaggcgct gccatacggc ccctttttgc ttaaggagtt 4920 cttgaaacgt gtacctctca agccaatgca tgacaggaag atgatggagc aggccaagtt 4980 tgatttcgag gagaagaaaa ctagcaagag tgcagcaacc attgagaatc acagtaatag 5040 atcatgcagg gattggctga ttgacgtggg gctggtcttt tcaaagtctc aattatgcac 5100 caaatttgac aatcggttta gggatgcgaa acgtgcacaa accattgtat gcttccagca 5160 cgcggtccta tgtcgatttg ctccctacat gcgctacata gagaagaagt tgaatgaggt 5220 gctgccgtca aagtattaca tacactctgg aaaagggctt gaggaactca acaggtgggt 5280 gatcgagggc cgttttgagg gcgtttgcac tgagtcagat tatgaggcct ttgacgcatc 5340 gcaagatcat tacattgtcg ctttcgagat atgcttgatg cgctatcttg gtttgccgaa 5400 cgatctcata gaggattaca aattcattaa aacccatttg ggctcaaaat tgggtaattt 5460 tgcgatcatg agattttctg gtgaggcaag cacttttcta ttcaacacta tggcgaatat 5520 gctgttcacg ttcttgcagt acgatttgaa gggtaatgag cgaatctgct ttgcaggtga 5580 tgatatgtgc gcaaatgggc gtttgcatgt ttccagtaag cacaagaact ttatgagcaa 5640 attgaagttg aaggcgaagg taagcaatac catgaatccc accttttgcg gatggaatct 5700 atctagtgat gggattttca agaagcccca gcttgtactt gagagactgt gcatagccaa 5760 ggagacgaac aacctcgcaa attgcattga caattatgcc attgaggtgt cttttgctta 5820 tctcatgggg gagcgagcca agcagcgaat ggacgaagaa gaggttgaag ccttttacaa 5880 ttgcgtccgc attattgtca agagcaagca ccttctcaag tcggatgttg ctactatata 5940 ccagacggct cgggttgatt agctttaggt tttagctagt tagtattgat atggatgtgc 6000 tagttaagta tttggtaaag aataatttcg agcgtcagtc tagcaattta actcttccta 6060 ttgttgtcca tagcgttcca ggcgcaggta aatcaacgct cattcgtgag cttatcacag 6120 ctgatcctag attcagtgcg ctcacttttg gcaaagcaga tccgcctaat ttgaggggag 6180 ctttcataag gtcagcattt ggcgccactc cctatcctga attcacattg attgacgagt 6240 atttggaggg ggaggttctt gaaggtgcct tcgcagtgtt tgctgatccc ttgcagggtg 6300 gtcctggcat acctcttcgc gctcacttca ttaagaggat tagtcatcgc ttcggtagcc 6360 agacttccgc attgctcact tcgttgggct ttgaggttga ggcgtgtgga gaggatcgtg 6420 tcgaaattgc tgatatcttc aaacgagatc ctgtgggagt tgtgctttac cacgagaagg 6480 aaataggggt tttgcttgct gctcattccg ttgaggccta ttgcattaag gaagtgcgcg 6540 gccagacttt tgaatcggtc actttcgtta ctgctgagtc cgcgccagta cttgaccgtg 6600 cgttgagctt tcagtgcttg acgaggcaca ggaagacatt attgctctgc cctaatgcca 6660 cttacaccgc cgcctaatta cacacaggca attactgcag cttgcattgg catatcactc 6720 gctctactcg tcggacttct cactcggagc acattgccca cggttggtga cctacagcac 6780 aacctcccac acggaggtcg ctatcgagac gggactaagt gcatagatta ccgtgggcca 6840 gccaaactaa attctgttga ggggcatggc acttggggca cccaaccctg gttactagtt 6900 atcgttctgg ttggtgcgat cattttgctc tcgaagcgtg gcacgcgtac ctgccaatgt 6960 ggaacaaccc attagttata gctatagttg tgtgttgctt tttgataacg ttgtttgctt 7020 tccgtagttt tgatagtcaa agttgtgtca ttgtgttaac tggtgagtca attagagttg 7080 taggctgttc actgagtcca gagcatatcg ttgcattgtc acatttgaag gtcctacaag 7140 tggaccttta ggtttacagg tgtgcgtttg attatacatt cttgaagcag ttatgcctcc 7200 gaaagaagca ccggctcaat caagcgaagg taacattgtc gccaaagaag caggggaagt 7260 cccgccccgt gttgcgcctg ctgcaccaca tgtgccgcct caggcaccgc ctctgcagcc 7320 aataattcag cctgctgggg ctgtggctgc caacctggtc cctgagaacc agttggaaca 7380 gagactcatg aacctcatcg aggtgctcaa gccgcagcgt cacaattcta gtctcaagaa 7440 cgtggccttc gagatcggcc ggcccgcctt ggagcctgtg ccaacaatga ggcgtaatcc 7500 tgcgaaccct tatgggcggt tctcaattga tgagctatac aagatggatg tgcaggttgt 7560 gtcaaacaat atggctacca ctgagcaaat ggccaagatc tcctcagcca tcgctgggct 7620 gggtgtaccc accgaacaag ttgctgatgt aattttgaaa atggtggtca tgtgcgcgag 7680 cgtcagtagc tccgtttact tggatccaga tggaagcatc gagttcgatg ggggagctgt 7740 gccggttgat tcaatagcgg caatcatgaa aaaggaggcc ggcctacgca aggtctgcag 7800 gctctatgct ccagttgtct ggaacttgat gctggtcaag aaccagcctc cgtctgactg 7860 gcaggccatg gggtacccga aagaagctag gttcgcggcg ttcgacactt tcgactacgt 7920 aaccaatggg gccgccatac agccggtcga ggggctaatt cgcggaccga ctcctgcgga 7980 gtgcatagcc cataatgctc acaaaaggca tgcgttggat cgatccaatc gcaatgagaa 8040 gtacgggaat ctcgaaacgg agtacactgg tgggcttcaa ggtgcagaaa tcgtccgcaa 8100 tcatcgaaat gcgggcaatg gatcagcatg atcagcgtag actgcttgct ttaataaaag 8160 tgtgtcgtag tttcaatttg tatgatgttg gtgtgtgcat tcatattctg aataaagtgc 8220 ccccccgtga ggttggcaat gggtgttcga gctacgctgc taagcgcaga gccaaatcga 8280 tcggacggtg cgaacgttgt tatcgtgtgt ttcccatagg ggcgtctaag tgttacaacc 8340 ggacatgtgt gccgggtata tcgtataatg aaaaggtggc taatttcatt cggtgtggag 8400 taactgaggt gataccgcac ccgggtttca atttctagcc gagtttcgtc taaatcctaa 8460 ttaatatata agggcgaaac tataaaaata atttgttttt aaactatttt ag 8512 //