ID L24049; SV 1; linear; genomic RNA; STD; VRL; 5861 BP. XX AC L24049; XX DT 21-DEC-1993 (Rel. 38, Created) DT 09-JUN-2000 (Rel. 64, Last updated, Version 3) XX DE Soybean dwarf virus RNA-dependent RNA polymerase, coat protein, DE genome-linked protein genes, complete cds. XX KW coat protein; genome-linked protein; RNA-dependent RNA polymerase. XX OS Soybean dwarf virus OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5861 RX DOI; 10.1006/viro.1994.1079. RX PUBMED; 8291248. RA Rathjen J.P., Karageorgos L.E., Habili N., Waterhouse P.M., Symons R.H.; RT "Soybean dwarf luteovirus contains the third variant genome type in the RT luteovirus group"; RL Virology 198(2):671-679(1994). XX DR MD5; d35130a891dc4c396ed80fc53e9e18dc. DR EuropePMC; PMC112128; 10864632. DR RFAM; RF00434; BTE. XX FH Key Location/Qualifiers FH FT source 1..5861 FT /organism="Soybean dwarf virus" FT /strain="Tas-1" FT /mol_type="genomic RNA" FT /db_xref="taxon:12049" FT 5'UTR 1..143 FT CDS 144..1226 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="subunit; putative" FT /db_xref="GOA:Q87032" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q87032" FT /protein_id="AAA17536.1" FT /translation="MFNFDSLVSATAKVVKDFIHFCYNRARHVYYALKRWLWELQGVFA FT AHDAFVDMCYDAMYGVEEFEWELQKQFSSAEHDVLIAKHEFERLLKDGAPLRTWPQPCA FT PLGSFRSSDDFQEAAREVKTVLDGPEPSLIKGSGDYSLDNPNRIEKFINLIQKKEVLSA FT TERMIKHAYEEHIGEAPFGKWFNTLPSRMDYIKRAASKRAKAAKRSNSIRQMVEEVNVI FT PDFISICDVVQVDTGEKLPPKKDKDGEPMEPEPKLKMVRRVRFEHYGDARKYIRQHIRN FT NNMRLTDGSDVSHATINRYALKFCEDLELDMTSTCYAGDYAMTMVPIPLKNDIERAKIV FT HSPAARQIRQELGVLNAEVF" FT CDS <1217..2824 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="5' end not determined; subunit; putative" FT /db_xref="GOA:Q87031" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q87031" FT /protein_id="AAA17535.1" FT /translation="GFLEGLCSDSGFESPFSILGLPEIVVRSGAAPRKSRSVISFLSQF FT TLGLDYQCPNPSLHNALVAVERRVFTVGKGNEVVLPYKNKPGIFSNLDYFRDSIVNKVG FT CPRTHTPEELAATYHSGKRSLYNAAVQSLKKKAVERSDANVTAFLKMEKHLMSKKIAPR FT LICPRNKRYNVELGRRLKFNEKKFMHAIDSTFDSPTVLSGYDSFRVGKIIANKWSKFKR FT PVAIGVDASRFDQHVGVEALQWEHSIYNGAFKDPILKELLHWQTENRIMLFVEDKILKF FT KVKGHRMSGDINTSSGNKLIMCGMMHYYFKTLGVKAELCNNGDDCVIICERKDENKFQH FT MHSWFKDYGFDMQIETPVYKIGQIEFCQSKPVKINGYYRMVRKPESISKDAHSLISMAS FT AEDVKTFMSATAQCGMILNSGVPVLDAFHKCLFKASGYKKVSQEAIERIVSFGTQDKLG FT LRKERVEEPITMDNRLSYWESSGVDPQTQVLVERYFDNLTVHIEPRGVKRLTPLLDKTL FT LSIASVARKSVSLPILSK" FT CDS 3032..3634 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q87033" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q87033" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAA17537.1" FT /translation="MVAVSNVAIQRRRSRRAARRAPRVQLMAVPTATSRPQRRGRQRRR FT RRNNRGGSFVSGGSGKAHTFVFSKDGINGSSKGSITFGPSLSECKPFSDGILKAYHEYK FT ITSVLLQFITEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTRAINGLE FT WHDTSEDQFKIHYKGNGESKIAGSFKISINVLTQNAK" FT CDS 3048..3617 FT /codon_start=1 FT /product="genome-linked protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q87034" FT /protein_id="AAA17538.1" FT /translation="MSQYNDDALVGQQDALQEFSSWLFQRPPADHNAEDDNDDEGEIIE FT EEALFPEDQARLTHSCFQRTASMVVPREVSLSGRLYQNASHSLMEYSRPTMNIRSRVSY FT YSSSPRPLPPRQVPSLMNLTHTASTPKFNRYSINSVSQRAVRNVSQPELSMASNGMIPV FT RINSRSTIKGTESPRSQAPSRSRSMS" FT CDS <3635..5209 FT /codon_start=1 FT /product="coat protein" FT /note="5' end not determined; subunit; putative" FT /db_xref="GOA:Q87035" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q87035" FT /protein_id="AAA17539.1" FT /translation="VDGEPGPKPGPDPAPQPTPTPKPTPAKHERFIAYTGTLSTLISAR FT QSSDSISLYSIRNQRIRYIEDENSSWTNIDAKWYSQNSVEAIPMFVYPVPEGTWSIEIS FT CEGYQAASSTSDPHRGKCDGMIAYDDDSSKVWNVGQQNNVTITNNKADNDWKYGHPDPL FT DLMINGDRFDQNQVVEKDGIISFHLVTTGPNASFFLVAPAVKKTAKYNFCVSYGDWTDR FT DMEFGMVSVVLDEHLEGARSSQYVRKSPRPGHFGVNRSHRLQDSFTPVEYVSDDDSSSS FT SSIVSNRPSTPDNDSDIQFANSLKGKLPSQTKLPPKGFQSRLSAREKEEISKSKPSNVE FT RQVGPLVDAYGYPSQTGVYDAAREILQSKEAAENLAELEKDLKEINKLEPPDTIEQEEI FT PDFVAPSERVIAEDDRDYVPSIWRNADQAVVISSFEPTDWSRPAYESGDPPKKAGLLKG FT TLSKLGGSLRSGESSLRGNLRKTQDQSDLEYKLSRLNVPQRSQYQRILANLGKVRARAY FT IDGLDLV" FT 3'UTR 5210..5861 XX SQ Sequence 5861 BP; 1730 A; 1234 C; 1367 G; 1530 T; 0 other; agtaaagttg acacctttac agaagtggtc ttacttgtaa gagttaactc atcaagagtt 60 aatataagat ccacctcccg gcaccttcgt atcgtgtttg aggtatctct agtgtttggt 120 tgtttaaata ctagctaata ttcatgttta atttcgatag tttagtgtcg gccaccgcca 180 aggtggtcaa agattttatt catttttgtt ataatagggc gaggcacgta tattatgccc 240 tcaaacgctg gctttgggaa ctccaaggcg tgtttgctgc acatgatgcc tttgtggaca 300 tgtgctacga cgccatgtat ggcgtcgagg agtttgagtg ggagttgcaa aagcaattct 360 ccagtgccga acatgatgtg ctcatcgcca agcacgaatt tgagcgccta ttgaaagatg 420 gcgccccatt gaggacatgg ccacaaccat gtgctccttt gggtagtttc cggtcgtctg 480 acgacttcca agaagctgcc agggaagtga aaactgtcct tgatggacct gaaccctcct 540 tgattaaagg gtcaggagat tactcacttg acaatcctaa ccggattgaa aagtttatca 600 acctcattca gaagaaggag gtactttccg ccaccgagcg aatgatcaaa catgcttatg 660 aagagcatat cggtgaggca ccattcggaa agtggttcaa cactttgccc tctcgtatgg 720 actacatcaa gagggccgct tcaaagagag ccaaggcggc taaaagatcc aactctatcc 780 gccaaatggt agaagaggta aatgtcattc ctgactttat ctcaatatgt gatgttgtcc 840 aggtggacac aggtgagaaa ctccccccaa agaaagacaa agatggggag ccaatggaac 900 ctgaacccaa actaaaaatg gtgagaaggg ttaggttcga gcattatggt gatgctcgta 960 agtacataag acagcatatt cgcaacaaca acatgcgtct tactgacggc tctgatgtta 1020 gtcatgctac catcaaccgc tatgctctta agttttgcga agacttggag cttgatatga 1080 ccagtacttg ctatgctggt gattatgcta tgacaatggt gcccattccc ctcaagaatg 1140 acattgaaag ggcgaagatt gtccattctc ctgcagccag gcaaatcagg caggagttgg 1200 gcgttctcaa cgctgaggtt ttttagaggg gctctgctcc gactctggtt ttgaatcccc 1260 gttttctatt ttggggttac cagagatcgt ggttcgcagt ggagctgcac ctaggaagag 1320 tcgtagtgta attagttttt tatcgcagtt taccttaggt ctagattatc aatgcccaaa 1380 tcccagttta cacaatgcat tggtggcggt tgaacgacgt gtgttcaccg ttgggaaagg 1440 aaatgaggta gtgctacctt acaagaacaa accaggaata ttttccaatc ttgattactt 1500 tagagactca attgtcaaca aagttggctg tccgaggacc cacactcctg aggaacttgc 1560 tgcaacgtac cactctggaa agagaagttt gtataatgct gcagttcaaa gcctcaaaaa 1620 gaaggcagtc gaaaggagtg atgccaatgt gacagctttt ctcaagatgg aaaaacattt 1680 aatgagtaag aagatagcac ccaggttgat atgtccccgc aacaaacggt ataatgttga 1740 attgggacgt cgattgaagt tcaatgagaa gaaatttatg catgcaatcg actcaacctt 1800 tgattcccca actgttctta gtggatatga cagtttcaga gttgggaaga taatagccaa 1860 taaatggtcc aaattcaaga gaccagttgc aataggtgtt gatgcgagca gatttgatca 1920 acatgtgggg gtagaagcac tccaatggga gcactcaatt tacaacggtg cattcaaaga 1980 tcccattctt aaggagttgc tacactggca aacagagaat agaattatgc tgtttgttga 2040 agataaaatc ctcaagttca aggtcaaagg acatagaatg tccggcgaca ttaacacctc 2100 ttctggcaac aaattaatca tgtgtggtat gatgcactac tacttcaaaa ctcttggagt 2160 caaagccgag ctctgcaata acggcgatga ttgtgttatc atatgcgagc ggaaagatga 2220 gaacaaattc caacacatgc acagctggtt taaagactat gggtttgaca tgcagattga 2280 gactcctgtc tacaagattg gacagataga gttttgtcaa agtaaaccag ttaaaattaa 2340 tggctattat aggatggtgc gtaaaccaga gagcatatcc aaagacgccc attccctcat 2400 ttcgatggca tcagctgaag atgtcaaaac tttcatgagt gcaaccgccc agtgcggtat 2460 gatcttgaat agtggtgtac ctgttcttga tgcttttcac aaatgcctat ttaaagcatc 2520 ggggtataag aaagtatcgc aagaagctat cgaaaggata gtctcttttg gaacacagga 2580 caaactcggg ctcagaaaag agcgagtcga agaaccaata acaatggata acaggttgag 2640 ttattgggag tccagtgggg ttgaccctca gacacaggtc cttgtcgaac gatattttga 2700 caatctgacg gtccatatcg aaccccgcgg tgtaaagaga ttgacgcctt tactagataa 2760 aactttgctt tcaattgcga gtgtagcacg aaaatctgtg tcgctaccaa tactttcaaa 2820 atagaagcac tcatagtaac catagtaata atattagtag tagtaattag tttattagat 2880 tacgctagtt cgtacagata aattgcaacg gattataaat tcctatcagg ttttgcttct 2940 ggatttattt ccagcatccc tgtatcaata ttggcaattt attttgttta cctaaaaatt 3000 tcaaagaatc tgcgcgagat aatcaacgag tatggtcgcg gttagcaatg tcgcaataca 3060 acgacgacgc tctcgtaggg cagcaagacg cgctccaaga gttcagctca tggctgttcc 3120 aacggccacc agccgaccac aacgcagagg acgacaacga cgacgaagga gaaataatag 3180 aggaggaagc tttgtttccg gaggatcagg caaggctcac acattcgtgt tttcaaagga 3240 cggcatcaat ggtagttcca agggaagtat cactttcggg ccgtctttat cagaatgcaa 3300 gccattctct gatggaatac tcaaggccta ccatgaatat aagatcacga gtgtcttatt 3360 acagttcatc accgaggcct cttccacctc gtcaggttcc atcgcttatg aacttgaccc 3420 acactgcaag tactccgaaa ttcaatcgct actcaataaa ttcagtatca caaagagcgg 3480 ttcgaaacgt ttcccaacca gagctatcaa tggcctcgaa tggcatgata ccagtgagga 3540 tcaattcaag atccactata aagggaacgg agagtccaag atcgcaggct ccttcaagat 3600 ctcgatcaat gtcctaacgc agaatgctaa ataggtagac ggagaaccgg gtccgaaacc 3660 aggtccagac ccagcacccc aaccaacacc aacacctaaa ccaacgccag ccaaacacga 3720 gaggtttatc gcgtacaccg gtacgttgtc tacactcatt agtgctaggc agtcttctga 3780 tagcatctcc ttatattcca ttcggaatca gaggatcaga tacattgaag atgaaaactc 3840 cagttggaca aacatagatg caaaatggta ctcacagaac tctgttgagg ctattccaat 3900 gtttgtttat ccagtacctg aaggtacttg gtcaattgag atttcttgtg aaggctacca 3960 ggcagcgtct agcacttcag acccgcatcg tggaaaatgc gatggcatga ttgcttatga 4020 cgacgattca tccaaggtgt ggaatgttgg ccagcagaat aatgtaacca taaccaacaa 4080 caaggccgat aatgattgga agtatggcca cccagatcct ctagatctga tgatcaatgg 4140 tgacagattc gatcaaaatc aagtagtcga gaaagatgga attatctcat tccatttagt 4200 aactactggc cccaatgcga gtttctttct tgtcgctcca gctgttaaga aaacagccaa 4260 atacaacttt tgtgtttctt acggggattg gacagataga gatatggaat ttggtatggt 4320 atcggtggtg cttgatgagc acttagaagg tgcaaggagt tctcagtatg ttagaaaatc 4380 gccaagacca ggtcattttg gcgtcaatcg ctctcaccga ttgcaagata gtttcactcc 4440 tgtggaatat gtcagtgatg atgatagtag tagtagtagt agtatagtta gcaatcgacc 4500 atcaactccg gacaatgata gtgatatcca gttcgcgaat tcgttgaaag gtaagcttcc 4560 gtctcagacg aaacttcctc ccaaaggatt ccaatcacgg ttaagcgcaa gagaaaaaga 4620 agagatttca aaatcaaagc cttcaaatgt tgaacgtcaa gttggtcctc tagttgatgc 4680 atatggatac ccttcccaga cgggtgttta cgatgcagct agggagattc tgcagtctaa 4740 agaggctgca gaaaacttgg cagaattaga gaaggatcta aaagaaatca acaagctgga 4800 accgccggat acaatcgaac aggaagaaat ccctgatttc gtagccccat cggagagagt 4860 gattgcggaa gatgatcgcg attacgttcc ttcaatttgg cgtaacgccg accaagctgt 4920 ggtaatctca tcttttgagc ctacagattg gagtcggcca gcttatgagt caggtgatcc 4980 tcctaagaag gcaggtttgc tcaaaggcac cctctcaaaa ttgggagggt cgcttagaag 5040 tggcgagtcg tctcttagag gtaacctccg caagacgcaa gatcaaagtg atctagagta 5100 caagttgtct agactcaatg ttccgcagcg atcccaatac caacggatct tggcgaacct 5160 tgggaaagtg cgtgcgcggg catatatcga tggtttagat ttagtttaat ataaatagaa 5220 gtaagtatgc gctttccatc acatttagtt ggagccaacc ttggtgagtt gctgtcgtgg 5280 gatcctggga aacaggttcg gtgaacaaaa agccggtaat ctcgggcgtt tgtcagacgc 5340 cgtcgcatca acacagtatg catatccatc aataacccaa cgttcttgtg actaaaaatt 5400 aaagttagtt tccgcctctc ttataaacca catataagat gcgagcttgt ggagagtacc 5460 gtcccttgaa taaggatggt tgaaagtttc tggtttcaat ccattgatca aaattgacac 5520 tgcttctggt gactacactg ccgctggcga tacagcataa acaatttcca ctacttgttc 5580 gatgaaatga gaacaattag taaagtcttg ccggtcacat gattatttgg cggtgctacc 5640 gttcgcccct ttgatggcgt taaatgaaag cggagtaaac cgacatcacc tcaccaggtt 5700 gggttaacct ggggaagccg ggaaaatgcc cggaacactt ggtttagtgg attttaaact 5760 cgagggctct tcctcgctaa aaagggggta gccaggttga aaactggcat tagggagtga 5820 tccctctttg ttgttaaggt ggctttgtgt ccacctgccc c 5861 //