ID L23972; SV 1; linear; genomic RNA; STD; VRL; 6828 BP. XX AC L23972; XX DT 21-NOV-1993 (Rel. 37, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 2) XX DE Pepper ringspot viral 12k, 29k 136k and 195k protein RNA, complete cds. XX KW . XX OS Pepper ringspot virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-6828 RX DOI; 10.1093/nar/13.23.8507. RX PUBMED; 3841203. RA Bergh S.T., Koziel M.G., Huang S.-C., Thomas R.A., Gilley D.P., Siegel A.; RT "The nucleotide sequence of tobacco rattle virus RNA-2 (CAM strain)"; RL Nucleic Acids Res. 13(23):8507-8518(1985). XX RN [2] RP 1-6828 RA Thomas R.A., Pena D., Siegel A.; RT "Characterization of the RNA-1 species of Pepper ringspot= Virus"; RL Unpublished. XX DR MD5; 430b887c4fbc65f91c4fa7974eabf50c. XX FH Key Location/Qualifiers FH FT source 1..6828 FT /organism="Pepper ringspot virus" FT /strain="CAM" FT /mol_type="genomic RNA" FT /db_xref="taxon:31750" FT CDS 200..3739 FT /codon_start=1 FT /product="136K protein" FT /note="putative" FT /db_xref="GOA:Q84919" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q84919" FT /citation=[2] FT /protein_id="AAA47082.1" FT /translation="MASRGFKLNQLIDIDEFSAEQRGQFFDMMLSKPDSQLGAVMQRNL FT VDKIDDMMRERKGRECVVLHELLSQKDQNRSIELYPEFNIVSKDDKNMVHGFAAAERKL FT QALLLLARVPKLEEVDDIGGQWSYWLTRGEKRVHSSCPILDVRDKQREMQRQSFLKSFR FT DNATTSDSVVTDAQYEMYNAFKNGVDKPNFVRCNNTFQDCNCRGYTKDGLRRGAEHAIA FT LHSLYDFELDSVADAMIEKKTKFLHAAMLFAPEAIMIEEGPLPDVNGYYHRVQKNLGTR FT PERIMFGFHDDPSYNYIHTWSEYKKYLLGKSFVRRGHTFFFEPWQGRGDTMFFTLYRMT FT NVPRTGLFGEEYYRRLYIKRWAGMVIAPVFDIDEVTMKIKRKQLYVEKAFLDKCLDYVA FT RLSDQQLTINNVKSFMSSNNWVLFINGAAIKNKQSMSPGDLQLLAQTILVKEKLSRPLM FT TEMRTRMAEQAAPVSGFCDLIVTTWRQKVWNGNLKRRVVRDLAKLFKLERGSETLETED FT PIRYYEIWDYLTLFFSEEEEAVRSLPDINDAKNKSDKIRNEAKDAANNVIKTKYENFQS FT PIDELKTPLIRKSENIKGAKKDRSVCNLFVGWQRLFHPEGSFKVLTDKTEEVKSVAVTK FT PFVVEEAPKLISDDEAFLELDRLVDSCEGSDEDCVIDEFLAGLSVCNSFSSEASSSGTK FT SDGGEIAVGIIRPKSPPGFLRPLVRSEQVEKTVERADPEVSSIVAESRFPEKPLETGDF FT SIDARLEYIYYLKCLVRAQNNEILMMLRSYQKGIIRAGGRGYPNGLDVWDLKFKKWVIE FT PPILNHSKVFVPDLKSFENGILCGEIIDASWDKSALDIVANRAFEADYCFVCDQLFLCN FT ERVILKNLLKLEVLPLDCKFKLVDGVPGCGKSTAIVESANPLFEVILSMGKEATEDLIA FT RFSKKKFGINIKKRVRTVDAFLMHCSNGECIGETLHFDEALMAHAGMVFFCAQLAKAKL FT VVCQGDQKQIAYKPRVAQVNLKFLSLVGRFDEVEEKRLTYRCPIDVALSLDRFYTGKVV FT TKNNVLRSMTTKRISSKEQVTMEKGVQYLTFLQSEKKEIATMLALRKIEAAVNTVHEAQ FT GKTFKKVILVRTKVTDDVLARGQEYRIVAISRHTQAMVYETVKDDEVSRLIAETSSLPK FT ASLMRYFVTDAAL" FT CDS 200..5296 FT /codon_start=1 FT /transl_except=(pos:3737..3739,aa:Trp) FT /product="195K protein" FT /note="readthrough product of 136K protein; putative" FT /db_xref="GOA:Q84918" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q84918" FT /citation=[2] FT /protein_id="AAA47081.1" FT /translation="MASRGFKLNQLIDIDEFSAEQRGQFFDMMLSKPDSQLGAVMQRNL FT VDKIDDMMRERKGRECVVLHELLSQKDQNRSIELYPEFNIVSKDDKNMVHGFAAAERKL FT QALLLLARVPKLEEVDDIGGQWSYWLTRGEKRVHSSCPILDVRDKQREMQRQSFLKSFR FT DNATTSDSVVTDAQYEMYNAFKNGVDKPNFVRCNNTFQDCNCRGYTKDGLRRGAEHAIA FT LHSLYDFELDSVADAMIEKKTKFLHAAMLFAPEAIMIEEGPLPDVNGYYHRVQKNLGTR FT PERIMFGFHDDPSYNYIHTWSEYKKYLLGKSFVRRGHTFFFEPWQGRGDTMFFTLYRMT FT NVPRTGLFGEEYYRRLYIKRWAGMVIAPVFDIDEVTMKIKRKQLYVEKAFLDKCLDYVA FT RLSDQQLTINNVKSFMSSNNWVLFINGAAIKNKQSMSPGDLQLLAQTILVKEKLSRPLM FT TEMRTRMAEQAAPVSGFCDLIVTTWRQKVWNGNLKRRVVRDLAKLFKLERGSETLETED FT PIRYYEIWDYLTLFFSEEEEAVRSLPDINDAKNKSDKIRNEAKDAANNVIKTKYENFQS FT PIDELKTPLIRKSENIKGAKKDRSVCNLFVGWQRLFHPEGSFKVLTDKTEEVKSVAVTK FT PFVVEEAPKLISDDEAFLELDRLVDSCEGSDEDCVIDEFLAGLSVCNSFSSEASSSGTK FT SDGGEIAVGIIRPKSPPGFLRPLVRSEQVEKTVERADPEVSSIVAESRFPEKPLETGDF FT SIDARLEYIYYLKCLVRAQNNEILMMLRSYQKGIIRAGGRGYPNGLDVWDLKFKKWVIE FT PPILNHSKVFVPDLKSFENGILCGEIIDASWDKSALDIVANRAFEADYCFVCDQLFLCN FT ERVILKNLLKLEVLPLDCKFKLVDGVPGCGKSTAIVESANPLFEVILSMGKEATEDLIA FT RFSKKKFGINIKKRVRTVDAFLMHCSNGECIGETLHFDEALMAHAGMVFFCAQLAKAKL FT VVCQGDQKQIAYKPRVAQVNLKFLSLVGRFDEVEEKRLTYRCPIDVALSLDRFYTGKVV FT TKNNVLRSMTTKRISSKEQVTMEKGVQYLTFLQSEKKEIATMLALRKIEAAVNTVHEAQ FT GKTFKKVILVRTKVTDDVLARGQEYRIVAISRHTQAMVYETVKDDEVSRLIAETSSLPK FT ASLMRYFVTDAALWRCRSRFDSFSHHDGPCSVPDTGTTVDIQTWYDDIFPGNSVRDSSL FT DGYMVSTTDCNVRVDNVVLKSGNWKDKYGDEMKCLVPVLRTAMPDKRKTTQLEGLLALQ FT KRNCAAPELQENVHESVLVDETIKRLKDVVYDVEKIRSDPINQKIHMQKWWKNQSTSVQ FT AKIISDVRELHEIDYSSYMFMIKSDVKPKMDTTPQSEYAALQTVVYHEKLINSLFGPIF FT KEINERRLDAMHPHFVFNTRMTSSDLNERVKFLHPDTDYDFIEIDLSKFDKSANQFHLH FT LQLEIYRMFGLDEWAAYIWEVAHTQTTVRDIQNGMMAFIWYQQKSGDADTYNANSDRTL FT CALLSEMPLEKAVLMTYGGDDSLIAFPKGTTICDPCDKLATKWNFECKIFKFNIPMFCG FT KFLVKVQDRYEFVPDPVKVVTKLGKKSVIDTQHLAEIFISLNDSNRALSDANVLYALDV FT AIADRYKYEKSSVFALCALWKHIKSFSALCVLYREGEKELDYKKVDWKKATAAVKQFYD FT W" FT regulatory 5367..5371 FT /function="subgenomic promoter signal" FT /note="putative" FT /citation=[2] FT /regulatory_class="promoter" FT CDS 5415..6185 FT /codon_start=1 FT /product="29K protein" FT /note="Proposed to be generated from a subgenomic mRNA FT initiated= at nucleotide 5369.; putative" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q84920" FT /citation=[2] FT /protein_id="AAA47083.1" FT /translation="MENDKSLVALKKKTFELSNFSRLGSVELFVDQKRKRPKYFHRRRQ FT VVLNNVAGSLTEHKLGAFKVEDVGRIKSYAFLRIVAIQLVVSSHLPRDTPGHLQVDILD FT TRLTDGRKKNKVLQRFMAKACDNTSLIQYKFDYCVSTSENLADLWHIGTVATGVPVVDG FT CFPFSVEMSLIWVATDSTTRLNPEELNSTDYLEGDFSDQSQFEEYMSLNQVKAKAIDVK FT FKGEYVPKLRQDRNLASLEKIPQSIVKAASIKKK" FT regulatory 6169..6173 FT /function="subgenomic promoter signal" FT /note="putative" FT /citation=[2] FT /regulatory_class="promoter" FT CDS 6182..6508 FT /codon_start=1 FT /product="12K protein" FT /note="Proposed to be generated from subgenomic mRNA FT initiated= from nucleotide 6170." FT /db_xref="InterPro:IPR007968" FT /db_xref="UniProtKB/TrEMBL:Q84921" FT /citation=[2] FT /protein_id="AAA47084.1" FT /translation="MTKCALPECEENTQKNQMTCSMKHANKYNRYLASKFDVKRKCECK FT NCGWFPAISVQPDYVEVYFCCGMKHLQKCKTDNPLKEKRLNTPKRLFRDDVDFGLNLLF FT SEVC" FT misc_feature 6369..6828 FT /note="3' end region of identity with PRV RNA-2" FT /citation=[2] FT /citation=[1] XX SQ Sequence 6828 BP; 2031 A; 1133 C; 1692 G; 1972 T; 0 other; aaaacaatta gaatatttga agggacctcc ttacattcta gctagttttt tactgggacc 60 agtttaaaac ttgttttatt tttactttat gtattgtctt gctttcgttt ccttcaaagt 120 gacgtcaaca tactttcttg tagtttggtt tttgagagct ggttaacgtc ttgggacaaa 180 accacaaaat ttgaatacca tggcttcgag aggttttaaa ttaaatcaac tcatcgacat 240 cgatgaattc agtgcggaac agcgaggtca attttttgac atgatgctgt ctaaaccgga 300 ttctcaactg ggggctgtta tgcagcgcaa cttagttgac aagatagatg atatgatgag 360 agaaagaaaa ggacgagagt gtgtggttct ccacgaactt ttgtcacaaa aagatcagaa 420 tagatcgatc gaattgtacc ctgagtttaa cattgtctcc aaagatgata agaacatggt 480 tcatgggttc gctgctgctg agagaaaact tcaagcgtta ttacttttgg cgagagttcc 540 gaagcttgag gaagttgatg acatcggtgg tcaatggtcg tattggttga caagaggcga 600 aaaaagagtg cattcgtcat gtcctatctt ggacgttcgt gataaacaaa gagaaatgca 660 gaggcagagc tttttgaaga gtttcaggga taacgcaacg acttccgact cggtcgtcac 720 tgatgcgcag tatgagatgt ataatgcatt caagaatggt gtggataaac ctaattttgt 780 taggtgtaac aacactttcc aagattgcaa ttgcaggggt tatactaaag atggattgcg 840 gcgcggtgca gaacatgcaa tcgctctcca tagtttgtat gacttcgagc tcgacagcgt 900 ggcagacgct atgatcgaaa agaagacgaa attcctgcac gcagctatgc ttttcgcacc 960 tgaggcaatt atgatagagg aaggtccact acctgatgtt aatggttact accacagagt 1020 gcaaaagaat cttggaacta ggcccgagag aattatgttt ggttttcacg acgacccttc 1080 ctataattat attcacacct ggtctgagta taaaaaatac ttattaggaa aatcttttgt 1140 tcgacgtggc catactttct tctttgagcc gtggcagggt agaggagata cgatgttctt 1200 tacattgtat aggatgacta atgttcccag aactggcttg tttggagaag agtattacag 1260 gaggttgtac attaaaaggt gggctggaat ggtgattgcg ccggtcttcg acatcgacga 1320 agttactatg aagatcaaga ggaaacaact ctatgttgag aaagcgttct tagacaaatg 1380 tttggattac gttgctaggt tatctgatca acagctgacc atcaacaacg taaaatcatt 1440 catgagctct aacaactggg tcctgttcat taacggggca gctatcaaaa acaaacagtc 1500 catgtctcct ggagacttgc aactgttggc acagacgatt ctagtgaaag agaaactgag 1560 tcgtccattg atgacggaga tgaggacaag aatggcagag caagcagctc ctgttagcgg 1620 attctgcgac ttgattgtta cgacttggcg ccagaaggtg tggaatggca atcttaaaag 1680 aagagtggtt agggatttgg caaaactgtt taaactagaa cgtggttctg agaccttaga 1740 gacagaagac ccaattcgtt actacgaaat ctgggactat ctgactctat tcttctctga 1800 ggaagaagaa gctgttcgaa gtttaccaga tatcaatgat gctaaaaaca aatctgacaa 1860 gattcgcaat gaagctaaag acgcagcgaa caatgttatt aaaacgaagt atgagaattt 1920 ccaaagccca attgatgaac ttaagactcc tctgatccga aagtctgaga atatcaaagg 1980 tgcaaagaaa gacagaagcg tttgtaactt gttcgttggt tggcagcggt tgtttcatcc 2040 cgaaggcagt ttcaaagttt taactgataa gacagaagaa gttaagagcg ttgctgtgac 2100 caaaccgttc gttgttgagg aggctccgaa attgattagt gacgatgaag catttcttga 2160 actggataga cttgtggata gttgcgaagg ttctgacgaa gactgtgtaa ttgatgagtt 2220 tcttgctggt ttgagcgtct gtaatagttt ttcttcggag gcttcttcga gtggaactaa 2280 gtcggacggt ggcgaaatcg ctgttggaat tatacgtcca aagagtccac ctggtttctt 2340 gagaccctta gttcgaagtg agcaggtaga aaagacagtt gaaagagcag atcccgaggt 2400 gagttcgata gttgctgaat ctcggtttcc tgaaaaaccc ctggaaacag gagatttttc 2460 gatcgatgcc agacttgagt atatctatta tctgaagtgt ctagtgcgtg cgcagaacaa 2520 tgaaattctg atgatgttga ggtcgtacca gaagggtata attcgtgctg ggggaagagg 2580 ttatccgaat ggtttagatg tttgggatct taagtttaag aaatgggtga ttgaacctcc 2640 aattctcaac cactcaaagg tttttgttcc agatttgaag agtttcgaaa acggaatttt 2700 gtgtggggaa atcattgatg ctagttggga caagtccgcg ttggatattg tcgctaacag 2760 ggcttttgag gctgattact gttttgtgtg cgatcaactc tttttatgca atgaaagagt 2820 cattctcaag aacctgctta agctggaggt tcttccttta gattgcaaat ttaagttggt 2880 cgacggtgtt cctgggtgtg gaaaatctac tgcgattgta gaatcagcaa accccctctt 2940 tgaagtgatc ttgtcaatgg ggaaagaagc gacggaggac ttaattgcta ggttctcaaa 3000 gaagaaattt ggaatcaata tcaagaagag agttcgaact gtcgacgctt tcttaatgca 3060 ctgttcaaat ggagaatgta ttggagaaac tctccacttc gacgaggcct taatggccca 3120 cgccggaatg gtgtttttct gtgctcagct agcaaaggcg aaacttgtcg tatgtcaagg 3180 agatcagaag caaatcgctt acaaaccaag ggtggctcag gtgaatctaa aatttttgag 3240 tctcgttggt aggtttgacg aggttgaaga gaaacgcctg acttacaggt gcccaattga 3300 tgtcgctttg tccttagata gattctatac aggaaaggtt gttactaaga acaacgttct 3360 taggtcaatg actacaaaga ggatcagctc gaaggaacaa gttacaatgg aaaagggggt 3420 tcaatatttg acattcttac agagtgagaa gaaagagatt gctaccatgt tggcgctgag 3480 gaagattgaa gcagctgtga acacggttca tgaagctcaa ggaaaaactt tcaaaaaggt 3540 gatacttgtg cggacgaaag tgacagatga tgtgctggcg agaggacagg agtacagaat 3600 cgtggcaatt tcaagacaca ctcaagcaat ggtatatgaa acagtgaaag atgatgaggt 3660 gtctagactg attgctgaga cttcttcact cccaaaagca tctttgatga gatactttgt 3720 gactgatgct gccttatgac ggtgtcggtc gagattcgat tccttttcac accatgatgg 3780 cccgtgttcg gttccagaca ctggaactac tgtcgatata caaacatggt atgatgatat 3840 ttttccggga aattctgtga gggattcgag tctcgacggg tacatggtca gtaccactga 3900 ctgtaacgtt cgagtcgata atgtggtttt gaagtcaggt aattggaaag ataagtacgg 3960 tgatgagatg aaatgtctag ttccagtcct tcggactgcg atgccggata agcgaaagac 4020 cacgcagttg gaaggtctgt tggctttaca gaagcgaaac tgtgcggctc ctgagttaca 4080 agagaacgtt cacgaatcag ttctggtgga tgagactata aagagattga aagacgtcgt 4140 gtatgatgtg gagaaaataa ggtcggaccc cattaatcaa aagattcaca tgcagaagtg 4200 gtggaaaaat cagagcacaa gtgtacaagc gaagatcatc agcgatgtga gagaacttca 4260 tgagattgat tactcgtctt atatgttcat gatcaagtcg gatgtgaaac caaagatgga 4320 cacgactcct cagagtgagt acgcggcttt gcagacagtg gtgtatcatg agaaactgat 4380 taattcgttg tttggcccga tattcaaaga gatcaatgag aggaggttgg atgcaatgca 4440 cccacacttc gtcttcaaca caagaatgac atctagcgat ttgaatgaaa gagttaaatt 4500 tctgcaccca gacacagact atgatttcat agagatagat ctgtcgaagt ttgacaaatc 4560 cgcgaatcag tttcacctac atctgcaact ggagatttac cgcatgtttg ggttggatga 4620 gtgggccgcc tacatttggg aagtggctca cactcaaacg actgtcagag atatccagaa 4680 tgggatgatg gcctttattt ggtaccaaca gaaaagtgga gatgctgata catacaatgc 4740 caattctgac agaacacttt gtgctttatt gtcggagatg cctttggaga aggctgtgtt 4800 aatgacatac ggaggagatg actcgttaat tgcttttcca aagggaacaa caatttgtga 4860 cccatgtgat aagcttgcga cgaaatggaa ttttgaatgc aagattttta agtttaacat 4920 tccgatgttc tgtgggaaat ttcttgtgaa agtgcaggat aggtacgagt tcgttcctga 4980 tcctgtcaaa gttgtgacta aacttgggaa gaaatcggtg atcgatactc aacacttggc 5040 tgagatattc atatccttga atgattccaa ccgagcgttg tctgatgcga acgttttgta 5100 cgctctggac gtggcgatcg ccgatagata caagtatgaa aagagttctg tttttgcctt 5160 atgtgccttg tggaaacaca taaagagttt ctcggctcta tgtgtgttat acagagaagg 5220 tgaaaaggag ttggattaca agaaagtcga ttggaagaag gcgactgccg ctgtgaaaca 5280 attctatgat tggtagtagt attgaaaagg tgtttgtatt tatgtatatt tggtttcttc 5340 aagtagccct ataggcgcta tttgatgcat attgaatatc acatatttgc acagcattca 5400 aactgaattt tcacatggag aacgataagt cgttagttgc tttgaagaag aagacttttg 5460 aattgtctaa ctttagtagg ttgggttcgg tcgagttgtt cgtcgatcaa aaaagaaaga 5520 gaccgaagta ctttcacaga cgtaggcagg ttgttttgaa taatgtagca ggctctttaa 5580 ctgaacacaa gttaggtgct ttcaaagtag aagatgttgg aagaatcaag agttatgcct 5640 tcttgaggat cgtagcaatt caacttgttg tgtcttcgca tttacctagg gatacccctg 5700 ggcacttgca agttgacatt ttggatactc gtcttacgga tgggagaaag aaaaacaagg 5760 tcttgcagag gttcatggcc aaagcctgtg ataacacttc tttgattcag tataagttcg 5820 attactgcgt gagtaccagc gaaaatcttg cggacctttg gcacattggt acagtggcta 5880 ctggagtacc agttgtagat ggttgtttcc cgtttagtgt agaaatgtct ttaatttggg 5940 ttgctactga ttcgactact cggttaaatc ctgaagagct gaacagtacc gattatttag 6000 aaggtgactt tagtgatcag agtcaatttg aagagtatat gagcttaaat caagtcaaag 6060 cgaaagcgat tgatgtcaag ttcaaaggtg agtatgtgcc taaacttagg caggatagaa 6120 atttggcttc gttagaaaag attccgcagt caattgtgaa agcggcaagc ataaagaaaa 6180 aatgacgaag tgtgctctac ctgaatgtga agaaaatact cagaagaatc agatgacctg 6240 ttcaatgaaa catgctaata aatataatag gtatttagct agtaagttcg atgtaaaaag 6300 aaaatgcgag tgcaagaact gtggttggtt tcctgcgata tcagttcaac ctgattacgt 6360 ggaagtctac ttctgttgtg gcatgaagca tttacaaaag tgcaaaaccg ataatccttt 6420 aaaggagaaa cggttgaaca caccaaaaag actgtttaga gatgatgtag attttggtct 6480 taatttactg tttagtgagg tgtgttgata gtagttagtt aaatgtttaa ttaatgtgct 6540 attttagtta acgttataat atttagtagt atagtgttat gttattatgt ttgttttatt 6600 tgtgtatgag ctaggtatgg gtgtatgccc tgcttaagtg gttctaccat aggagtaaaa 6660 acagtgtgtt tatttattat tttagtgttt ataaaaatcc aaaaagattt tcgtaggttt 6720 taggtttcgg catttggccg gggttcgaat aacattaaag tggataagtt tgatgctggc 6780 gaacaaaggg tgaaaaaccc ttcgtcaacc gtgaacgtta tcacgccc 6828 //