ID L20893; SV 1; linear; genomic RNA; STD; VRL; 4450 BP. XX AC L20893; XX DT 08-SEP-1993 (Rel. 36, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 6) XX DE Rice yellow mottle virus complete genome. XX KW complete genome. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4450 RX PUBMED; 8113745. RA Yassi M.N., Ritzenthaler C., Brugidou C., Fauquet C., Beachy R.N.; RT "Nucleotide sequence and genome characterization of rice yellow mottle RT virus RNA"; RL J. Gen. Virol. 75:249-257(1994). XX DR MD5; 4a410c5fc69aeb00fd16e3f080ec4970. DR EuropePMC; PMC1061534; 15767440. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC371063; 15016846. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4450 FT /organism="Rice yellow mottle virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:31744" FT 5'UTR 1..79 FT CDS 80..553 FT /codon_start=1 FT /note="Stop codon at bp 551 could possibly be read through FT as; 'D' to the stop codon at bp 599." FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:Q86524" FT /protein_id="AAA72029.1" FT /translation="MTRLEVLIRPTSQTVAKAIAVGYTHALTWVWHSQTWDVDAVNDPV FT LSADFNPEKVGWVSVSFACTRCTAHYYTCEQVKYFTNIPPVHYDVVCADCERSVQQDDE FT IDREHNERNAEISACNARALSEGRPASLVYLSRDACDIPEHSGTCRFDKYLNF" FT CDS 608..3607 FT /codon_start=1 FT /product="polyprotein" FT /note="product: potential VPg, protease, helicase, and FT polymerase" FT /db_xref="GOA:Q86525" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q86525" FT /protein_id="AAA72030.1" FT /translation="MGSSVVGRFLTRTKETTRVDSHLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPMSMLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVIVESPFEIYGKFREANS FT EEYDESLRHGVQYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQPSWADRFGDDSG FT EDVDIETSHPVAPSIPRTRRKRSKRVEQFVDAVSECSFSFESAHEGIVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTAGTPSVIPSLPTECPSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTSLILQAGRFNRTVCPPGLAQAVQSLQERYPK FT VPPRRCLRDEWRFDDIFDEVERILCETGEVNSASSPGVPLAGLANSNGEVRGLARDLVC FT LAVVERLNALASVDPRQHNWTPRELVEKGLCDPVRLFVKNEPHPRRKLLERRFRLISSV FT SLVDQLVERMLFGPQNNTEISTWWQWPSKPGMGLLTPEQIRLVWDDVFQKHQAHPAAEA FT DISGFDWSVQDWELWSDLAIRINRGNFQGNLRRAAISRYYCFMNSVFQLSDGTLIQQEL FT PGLMKSGSYCTSSTNSRIRCLMAELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKE FT YYPCKTRGRELLEFNFCSHLIRRGHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVW FT SRIERYLRGIGRVSHKDGQEGQENQLQPGAARKEEEPTPTWSVGGAPASTGSSGPGLPD FT IWDGSWTTIF" FT CDS 2092..2469 FT /codon_start=1 FT /db_xref="UniProtKB/TrEMBL:Q86526" FT /protein_id="AAA72031.1" FT /translation="MPFSYVGKSGVIFGEHAGKSVCAAVKDAVSVFPDLEGFGWPERGS FT KAELDFPHPPSRPVQQNGMSPRARASSPITPRKVPKSPPQAMPQGRVEVRRHLRRSRKN FT PLRNRRSELRFLAGGAARGPC" FT CDS 3447..4166 FT /codon_start=1 FT /product="coat protein" FT /note="stop codon at bp 4166 could possibly be read through FT to the stop codon at bp 4204" FT /db_xref="GOA:Q86527" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="PDB:1F2N" FT /db_xref="UniProtKB/TrEMBL:Q86527" FT /protein_id="AAA72032.1" FT /translation="MARKGKKTNSNQGQQGKRKSRRPRGRSAEPQLQRAPVAQASRISG FT TVPGPLSSNTWPLHSVEFLADFKRSSTSADATTYDCVPFNLPRVWSLARCYSMWKPTRW FT DVVYLPEVSATVAGSIEMCFLYDYADTIPRYTGKMSRTAGFVTSSVWYGAEGCHLLSGG FT SARNAVVASMDCSRVGWKRVTSSIPSSVDPNVVNTILPARLAVRSSIKPTVSDTPGKLY FT VIASMVLRDPVDPTLNT" FT 3'UTR 4205..4450 XX SQ Sequence 4450 BP; 971 A; 1170 C; 1276 G; 1033 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcatcc ctccttccga cgaacaattg 60 tagccacact gcatcgtgta tgacacggtt ggaagttctt atacgaccga cttcgcagac 120 tgtggcaaaa gccatcgccg tgggctatac gcacgcactc acctgggttt ggcattctca 180 gacctgggac gttgacgcag tgaacgatcc agttctcagc gccgacttca accccgagaa 240 ggttggttgg gtgtcagtgt cgtttgcctg tactcggtgt acagcccact actacacgtg 300 tgagcaggtg aaatatttca ctaatattcc gcctgttcat tacgacgtgg tgtgcgctga 360 ttgcgagcgt agtgttcagc aggacgacga gatcgaccgc gagcacaacg agcgtaacgc 420 agagatttct gcctgcaacg ctcgagccct aagtgaggga aggccagcga gtctggttta 480 cctttcgcgg gacgcttgtg atatacccga gcactccgga acgtgtcggt tcgacaaata 540 tctcaacttt tgagagaatc agtcctgccg acatctaagg agcggtcttg gttcagacta 600 acgcgggatg ggctcttctg ttgttggtcg ctttctcact cgcaccaagg aaacgacgag 660 ggtggactcc caccttctca tcgtcttggc tgggttgata gcggccgcga tagtctcaga 720 gcgcctaccc gtgacggcgt cattgtgggc aatcccctca gctatcatag caaactggat 780 cgtgctgtca gctcacgaga gcttcagccg gttcgttgag ggggttgaga ttgagcctat 840 gtccatgctt cggtatggca aggttcagtc tgcccctagg ttcgatccct cccggggtta 900 tgtggtcgac gtatcttaca acggccacgt gattcctgtg atattggact ttaccacgac 960 aacggctttg tcggttcccc aaagagtaaa tcccggggtc tcgatggagg caagtcgtgg 1020 ggggcttcca ccaacgtccg tcaaactcga agatgtgccg ccgagcgttg tggttttgta 1080 ccacgactcc gtcaggctag gcctaggaac tagggtgcga actcccacag gtcgtgatct 1140 cctcatgacc aatcaccaca tcgctgcctt agaacccaat ggtatcgcgt acaagggtca 1200 ccttaagaaa gtggctctgg acgcgccagt catcgcatgt gaccatccac acatagactg 1260 cgcgttttac gaggtgcctc ccaagatctg gtctctcttg ggggtcaagt ctgccagtct 1320 gaagcctctg gttaagcaga ctgcggtgtc actcttcgga ggctcgtcat ctactgactt 1380 ctcaagttgt gttgggatcg cccagattgg ggataatcca ttcctgataa ggcatcaaag 1440 cacgacttgc agtgggtggt cgggctcccc gctctaccac aaaggttgcg tggttggctt 1500 gcatataggt gctgcggatg gttacaatgt ggcatctaat gtagcctggt actttcatac 1560 tttcaagaag gaagtgatcg ttgagtctcc ttttgagatt tacggtaaat tccgcgaagc 1620 aaactccgag gaatatgacg agagtctacg acacggggtg cagtatgcag agtacgactt 1680 ctctggtgat accatccggg cttcttcgaa tacctgggtg cgtgagagag agaggtacca 1740 cgctgaggaa cgtcgtaagt ccggccagcc tagctgggca gatcgttttg gtgacgatag 1800 tggcgaggat gttgatatcg agacatcgca tcccgtagca ccatcaatac ccagaacgcg 1860 gcggaaacgg tcaaagcgcg ttgagcagtt cgtcgacgcg gtttcagagt gctccttctc 1920 gttcgagtct gctcacgagg ggattgtgcc agagacctca gcttatgacc acgttccttt 1980 aaactgccag ggggcgggct cgagccttcg ggcgagtccg cccttggacg gcttatccaa 2040 ctcggagaat accgctggga ctccctcggt gattccctcc cttccgacgg aatgcccttc 2100 agctacgttg gaaaatcggg tgtcatcttt ggagaacatg ctgggaaaag tgtctgcgca 2160 gctgtcaaag acgcagtctc agtattccca gatcttgaag gatttggctg gcctgagagg 2220 ggaagtaaag cagagcttga cttccctcat cctccaagcc ggccggttca acagaacggt 2280 atgtcccccc gggctcgcgc aagcagtcca atcactccaa gaaaggtacc caaaagtccc 2340 ccccaggcga tgcctcaggg acgagtggag gttcgacgac atcttcgacg aagtcgaaag 2400 aatcctctgc gaaaccggcg aagtgaactc cgcttcctcg ccgggggtgc cgctcgcggg 2460 ccttgctaat tccaacggtg aggtacgagg gcttgcgaga gatttggtat gtttagctgt 2520 ggtggagcgt ttgaatgcct tagcctcggt tgacccccgc cagcataact ggacacccag 2580 ggagctggta gagaaaggtc tttgtgaccc tgtgcgtttg ttcgttaaga acgagccaca 2640 cccacggagg aaattgcttg aacgccgatt caggctgatt tcctccgttt ctctagttga 2700 ccagctggtg gagcggatgc ttttcgggcc tcagaacaac actgagattt caacttggtg 2760 gcagtggcct tcgaagccgg gcatgggtct tttgacccct gaacaaatcc gtttggtgtg 2820 ggacgatgtg ttccagaagc accaggccca ccctgcggct gaggcagaca tatcggggtt 2880 tgactggtcc gttcaggact gggagttgtg gtcagacctc gcgatccgaa ttaacagggg 2940 gaattttcag ggaaacctca ggagggcggc tatcagccgc tactactgct ttatgaactc 3000 tgttttccag ctctcagatg gaacccttat ccagcaggag ttgcccggat tgatgaaatc 3060 cggctcctac tgcacctcat ccactaactc gcgcatacgc tgcttaatgg ctgagctcat 3120 cggctcgccg tggtgcatag ctatgggcga tgactctgtg gaggggtgga ttgagggggc 3180 ccaatccaag tacgccgcgc taggtcacac ctgcaaggag tactacccat gtaagaccag 3240 gggccgggaa ctcctggaat tcaacttctg ttcacatctg atcaggaggg gtcatgctga 3300 gctcacttct tggccgaaag cgttgtttcg ctttctgtcg agcaagcatg aggattttga 3360 agatctgtgg gttgagctcc acacgtgcgg ggtgtggagc cggatcgaac gatatctgcg 3420 tgggataggc cgagtctccc acaaagatgg ccaggaaggg caagaaaacc aactccaacc 3480 aggggcagca aggaaagagg aagagccgac gcccacgtgg tcggtcggcg gagccccagc 3540 ttcaacgggc tccagtggcc caggcctccc ggatatctgg gacggttcct ggaccactat 3600 cttctaacac ctggccgctc cactccgttg agttcctagc ggacttcaag cggagttcca 3660 catcggcaga tgcgacgaca tacgattgtg tgccgtttaa tctgcctcgg gtgtggagtc 3720 ttgcgcgttg ttactccatg tggaagccaa cacggtggga tgtcgtttac ctccctgagg 3780 tgagcgccac ggtagctggg agtatcgaga tgtgttttct ctacgactat gctgacacca 3840 tcccaaggta cacgggcaag atgagcagga cggcgggctt cgtcacctct agcgtttggt 3900 acggcgcgga gggctgccac ttactgagtg gtggctcagc acgaaatgcc gtggtcgcct 3960 cgatggattg ctctcgagtc ggctggaaac gcgttactag ctctatacct agtagcgtgg 4020 atcccaacgt cgtaaacacc atactgccag ctaggctagc tgtgcgatcg tcgatcaaac 4080 cgacggttag tgatacgccg gggaaactct acgtaattgc tagtatggtc ctgcgggatc 4140 cggttgatcc aacactcaat acgtgagccg gacccagtag agataggtat tggcaccagt 4200 gatgatccac ggattggcta cgagatcgac ttaccctgaa aaggatgttg agcgttcttg 4260 aacgcggccc aatcctacga gatgatactg gtgactatcc tacgtgagga gttgcactca 4320 cgcttcaacc caaagcgacc catgcactgg acagtgctta cccagatggt tttcggagct 4380 actgggcgga cctttcacca aaccgaattc cccactcttt ccgagagaat tctcgggatg 4440 ggtgggggag 4450 //