ID L19655; SV 1; linear; genomic RNA; STD; VRL; 8214 BP. XX AC L19655; XX DT 07-SEP-1994 (Rel. 40, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 4) XX DE Tomato ringspot virus polyprotein (RNA-1) gene, complete cds. XX KW helicase; NTP-binding protein; protease; protease cofactor; KW RNA-dependent RNA polymerase. XX OS Tomato ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-8214 RX PUBMED; 7844569. RA Rott M.E., Gilchrist A., Lee L., Rochon D.; RT "Nucleotide sequence of tomato ringspot virus RNA1"; RL J. Gen. Virol. 76(Pt 2):465-473(1995). XX DR MD5; 676466974cac466831ffb69dc81a8809. DR EuropePMC; PMC3314827; 22218961. XX CC On Sep 27, 1995 this sequence version replaced gi:532256. XX FH Key Location/Qualifiers FH FT source 1..8214 FT /organism="Tomato ringspot virus" FT /strain="raspberry" FT /mol_type="genomic RNA" FT /db_xref="taxon:12280" FT CDS 78..6671 FT /codon_start=1 FT /gene="RNA-1" FT /note="ORF" FT /db_xref="GOA:P29150" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/Swiss-Prot:P29150" FT /protein_id="AAA78254.1" FT /translation="MSSICFAGGNHARLPSKAAYYRAISDRELDREGRFPCGCLAQYTV FT QAPPPAKTQEKAVGRSADLQKGNVAPLKKQRCDVVVAVSGPPPLELVYPARVGQHRLDQ FT PSKGPLAVPSAKQTSTAMEVVLSVGEAALTAPWLLCSYKSGVSSPPPPMTQRQQFAAIK FT RRLVQKGQQIIRELIRARKAAKYAAFAARKKAAAVAAQKARAEAPRLAAQKAAIAKILR FT DRQLVSLPPPPPPSAARLAAEAELASKSASLQRLKAFHRANRVRPVLNNSFPSPPLACK FT PDPALLERLRLATPSRCTVATKRQRDFVVAPLATQIRVAKCASHQEAYDSCRSILIEEW FT PESRYLFGPLSFVGDWEHVPGMLMQYRLCVLFSMVRDVMPALSLVADTLHALRSGTAPN FT IVFKNAMSTANQILECSHSSHAAQGFGNFLSRGKSAAINLASGLSSFVGEKVVSGANHV FT VNKASEVIVDKLFVPFVKLLREHFDDTIGKWIPKLLGATQKIEELWRWSLEWAQNMSKK FT LDVSLRVLRGSALVGVGLLLVSGILYFAEQLLRSFGLLIVAGSFISMFVGGCLLAYAGS FT MAGIFDEQMMRVRGILCEIPMLLYLKAQPDPFFPKKSGGRAPTQGLTDVFGVPLSIMNA FT IGDGLVHHSLDTLTLMGKFGAAMDNVRKGITCMRSFVSWLMEHLALALDKITGKRTSFF FT RELATLINFDVEKWVRDSQQYLLAAEIYVDGDTVVMDTCRHLLDKGLKLQRMMVSAKSG FT CSFNYGRLVGDLVKRLSDLHKRYCASGRRVHYRLAPFWVYLYGGPRCGKSLFAQSFMNA FT AVDFMGTTVDNCYFKNARDDFWSGYRQEAICCVDDLSSCETQPSIESEFIQLITTMRYG FT LNMAGVEEKGASFDSKMVITTSNFFTAPTTAKIASKAAYNDRRHACILVQRKEGVAYNP FT SDPAAAAEAMFVDSTTQHPLSEWMSMQELSAELLLRYQQHREAQHAEYSYWKSTSRTSH FT DVFDILQKCVNGDTQWLSLPVDVIPPSIRQKHKGNRVFAIDGRIFMFDYMTLEYDEIKE FT KENLDARHLEARILEKYGDTRLLLEKWGANGVVAQFIEQLLEGPSNVASLEVLSKDSLE FT SHKEFFSTLGLIERATLRAVQKKIDAAREDLMHLSGLKPGRSLTELFVEAYDWVYANGG FT KLLLVLAAVILILFFGSACIKLMQAIFCGAAGGTVSMAAVGKMTVQSTIPSGSYADVYN FT ARNMTRVFRPQSVQGSSLAEAQFNESHAVNMLVRIDLPDGNIISACRFRGKSLALTKHQ FT ALTIPPGAKIHIVYTDNNGNTKAPLTHFFQPTGPNGEHFLRFFNGTEVCIYSHPQLSAL FT PGAPQNYFLKDVEKISGDIAIKGCGIKLGRTSVGECVGVKDNEPVLNHWRAVAKVRTTK FT ITIDNYSEGGDYSNDLPTSIISEYVNSPEDCGALLVAHLEGGYKIIGMHVAGSSYPVEV FT DGVQMPRYISHASFFPDYSSFAPCQSSVIKSLIQEAGVEERGVSKVGHIKDPAETPHVG FT GKTKLELVDEAFLVPSPVEVKIPSILSKDDPRIPEAYKGYDPLGDAMEKFYEPMLDLDE FT DVLESVMADMYDEFYDCQTTLRIMSDDEVINGSDFGFNIEAVVKGTSEGYPFVLSRRPG FT EKGKARFLEELEPQPGDTKPKYKLVVGTEVHSAMVAMEQQARTEVPLLIGMDVPKDERL FT KPSKVLEKPKTRTFVVLPMHYNLLLRKYVGILCSSMQVNRHRLACAVGTNPYSRDWTDI FT YQRLAEKNSVALNCDYSRFDGLLNYQAYVHIVNFINKLYNDEHSIVRGNLLMAMYGRWS FT VCGQRVFEVRAGMPSGCALTVIINSLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGD FT DNLISIKPDTMKYFNGEQIKTILAKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVE FT SDGRVLAPLDLQAIYSSLYYINPQGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYV FT NQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLEVDVPDAKFLQHKAPATALSIVA FT DRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRRLK FT DHRVRHMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTSVGMNAQDLLINYGIQGGAHKE FT YLGRYFVGARFKELERYDRPFQSRIIAS" FT polyA_site 8214 XX SQ Sequence 8214 BP; 1960 A; 1764 C; 2039 G; 2449 T; 2 other; nnagcgaaaa atctggtgat attccaactt ctctcaattc acacttccat tgtgtcgttt 60 tgttttcttt tcttttgatg tcctccattt gtttcgccgg tggcaaccac gccaggttgc 120 catcgaaggc tgcttactat cgggctattt ccgataggga gctggaccgc gagggtcgct 180 tcccttgcgg gtgtctagca cagtatactg tgcaagcccc ccctcctgcc aagacacagg 240 agaaagccgt aggcaggtcc gctgacctcc aaaagggtaa tgttgctccc cttaagaagc 300 aacgctgcga tgttgtggtc gcagtctctg gacctcctcc tttggagttg gtctaccctg 360 cccgggtagg gcaacatagg ttggaccaac cttcaaaagg tcccttggca gttccctctg 420 ccaagcaaac ctccactgca atggaggttg ttctttctgt cggggaggcg gctcttactg 480 ccccctggct tctctgctcc tacaagagtg gagtttcttc cccccccccc cccatgacgc 540 aaaggcagca atttgctgcc attaaaagga ggctggtcca gaagggccag caaattattc 600 gcgagctcat ccgagctcgc aaggcggcta agtatgccgc ctttgccgcc cggaagaagg 660 cggcagctgt ggctgcccaa aaggcacgag ctgaggctcc gcgcctcgcg gcccaaaagg 720 ccgcaattgc caagatcctt cgggatcggc aattggtttc ccttccccct cctcctcctc 780 cttctgctgc caggttggca gctgaggccg aattggcctc caaatcagcc tctcttcaga 840 ggctcaaggc ctttcatagg gccaaccggg ttcgcccggt gttaaacaat tcttttccct 900 cccccccttt ggcgtgcaag ccagatcccg ctcttcttga gcggttgagg cttgctacgc 960 cttcacgctg caccgttgcc actaaaaggc agcgggattt tgttgtcgcc ccccttgcca 1020 cccaaattag agtggccaag tgtgcttccc atcaggaagc atatgattct tgtcgctcca 1080 ttcttattga ggagtggcca gagagtaggt atcttttcgg acctctctct tttgtgggtg 1140 attgggagca cgtgcctgga atgctcatgc agtacaggct ctgcgtgctg ttttctatgg 1200 ttagggatgt gatgcctgcg ctttctctcg tagcagatac attgcatgcc ttgaggagcg 1260 gtactgctcc aaacattgtt tttaaaaatg ccatgagcac tgcaaatcaa attttagagt 1320 gctcgcattc ctctcatgca gctcaaggtt tcggcaattt tttgagtcga ggcaagagtg 1380 ctgctattaa tttagctagt ggtctctcta gttttgttgg agagaaagtg gtttctggtg 1440 ccaatcatgt tgtgaataag gcatcagaag tcattgttga taagcttttt gttccctttg 1500 taaagctttt gcgggaacat tttgacgata ccataggtaa atggattccc aagttactgg 1560 gtgccacaca gaaaattgaa gagctgtggc gatggtcgct tgagtgggcg cagaatatgt 1620 ctaagaaatt ggacgtttct ctgcgcgtgc tgcgaggttc agccctcgtt ggggtcggtt 1680 tacttttggt atccggcatt ctttattttg cggagcagtt gcttcgctct tttggcctgc 1740 taattgtagc aggttctttt atttctatgt ttgtaggagg ctgtctattg gcttatgccg 1800 gtagtatggc tggaattttt gatgagcaga tgatgcgagt ccgcggtatt ttgtgcgaga 1860 ttcccatgct gctttattta aaagcgcagc cagatccgtt ttttcctaag aaatctggtg 1920 gacgagcccc aactcagggg ctcactgacg tttttggcgt tcctctgagt atcatgaacg 1980 ctattggcga tgggctagtg caccattccc ttgatactct tacgttaatg gggaaatttg 2040 gtgcagctat ggataatgtc cgtaagggca ttacctgtat gaggtcattt gtttcatggc 2100 ttatggaaca cttggcccta gctcttgata agataactgg caagcgcact tctttttttc 2160 gtgaacttgc cacgttaatt aattttgatg ttgaaaagtg ggtccgagat tcacagcagt 2220 atttgcttgc tgctgaaatc tatgtggatg gtgacactgt cgtgatggac acatgtcgcc 2280 acttactcga taagggactc aagctccagc gaatgatggt cagcgctaaa tctggttgct 2340 cttttaatta tggccgtctt gttggagatc tcgttaaaag gttgagcgat ttgcacaaga 2400 gatactgtgc ttcaggacgc cgcgtgcatt ataggttagc accattttgg gtgtacttat 2460 atggcggtcc taggtgcgga aaatctcttt tcgctcagag tttcatgaat gcagctgtgg 2520 acttcatggg caccacagtt gacaattgtt attttaaaaa tgctcgtgac gatttttgga 2580 gcggctatcg ccaggaagcg atatgctgcg ttgatgatct ctcctcctgc gaaacgcaac 2640 cctccattga gtcggaattc attcaattga taacgacaat gagatatgga ttaaatatgg 2700 caggagttga ggaaaaagga gcctcatttg attcgaagat ggttatcaca acatctaatt 2760 ttttcacggc tccaactact gctaagattg ctagcaaagc tgcctacaac gataggcgtc 2820 acgcttgcat tcttgttcaa agaaaagaag gggttgctta caacccaagt gatcctgctg 2880 ctgctgcgga agcgatgttt gttgatagta ctactcagca tccgctttcc gagtggatga 2940 gcatgcagga attaagtgct gagttgttgc tgcgttacca acagcatagg gaggctcagc 3000 atgcagaata tagctattgg aaatccactt cgcgcacttc tcatgatgtt tttgacatct 3060 tgcagaagtg cgtgaatggg gatacccagt ggctatcact tcccgttgac gttatccctc 3120 cgtctattag gcagaagcac aagggcaacc gagtcttcgc tattgatgga aggattttta 3180 tgtttgatta tatgacccta gagtacgatg aaatcaagga aaaagagaat ctggatgctc 3240 gtcatctgga agctcgaatc cttgaaaagt acggtgacac ccgcttgctt ttagaaaagt 3300 ggggtgccaa tggagttgtt gcgcaattta ttgagcaact tcttgagggt ccttctaacg 3360 ttgcctcctt ggaggtttta tctaaggact ccctcgagag tcacaaggaa tttttttcta 3420 ccttgggact tatcgagaga gctaccttgc gtgctgtgca gaagaaaatt gatgccgcgc 3480 gtgaggattt gatgcatttg tctggtttga aaccagggcg ctcacttaca gaattgttcg 3540 ttgaagcgta tgactgggtt tacgccaacg gtggtaagct ccttttagtg cttgctgccg 3600 taattttgat tttattcttt gggtctgctt gtataaagtt gatgcaggcc attttttgtg 3660 gtgccgcagg tggtactgtc agtatggctg ctgtcgggaa aatgaccgtt caatcgacga 3720 ttccctccgg tagttatgca gacgtgtaca atgcgcgcaa catgacacgc gttttccgcc 3780 cacaatctgt acagggttct tctttggcgg aagcgcaatt taatgaatcg cacgctgtga 3840 atatgttagt gcgaattgat ttacctgatg gcaacattat ttctgcctgc aggtttcgcg 3900 gaaagtcttt ggctttgact aaacatcagg ccttaaccat accgccaggt gctaaaatcc 3960 atattgtata tactgacaac aatggaaata ccaaagcacc gctgactcat tttttccaac 4020 ctactggacc caatggagaa cattttttga gattcttcaa cgggacagag gtttgtattt 4080 attcccaccc tcaactttca gctttgcctg gcgctccaca aaattatttc ttgaaagatg 4140 tggaaaaaat atctggtgac atagccatta aaggttgtgg catcaagcta ggtagaacca 4200 gcgttggcga gtgtgttggt gttaaggaca atgaacccgt cttaaatcac tggcgcgctg 4260 tcgcgaaggt ccgcaccacc aagatcacta tcgataatta ttcagagggt ggtgattatt 4320 ccaatgatct tcctacgtcc atcatctctg agtacgtaaa ttcaccagaa gattgtggcg 4380 cgcttttagt cgcccatctt gaaggtggtt acaaaatcat agggatgcac gtggcgggat 4440 cctcttatcc tgtcgaggtt gatggagtgc agatgccaag atacatatct catgcctcct 4500 tcttccccga ttattcttct tttgctcctt gccagtctag tgttatcaaa tctctaattc 4560 aagaggctgg cgttgaggag cgtggggttt ctaaagtggg acatattaaa gatcctgctg 4620 agacgcccca tgttggaggg aaaactaagc ttgaattggt tgatgaagcc ttcttggtgc 4680 catcaccagt tgaggtaaag attccctcca ttctgtctaa agatgacccg cgcattcctg 4740 aagcgtataa gggttatgat ccattgggcg atgccatgga gaagttttat gagcccatgt 4800 tggatctgga cgaagatgtc ttggagagcg ttatggcaga tatgtatgat gaattctatg 4860 attgccaaac gactctccgt attatgtctg atgacgaagt tatcaatggc agcgattttg 4920 gtttcaatat tgaagccgtt gtcaaaggta cttctgaagg ctacccgttc gttttgagtc 4980 ggcgaccggg cgagaagggc aaagctcgct ttttagaaga gcttgaaccc caaccaggtg 5040 acactaagcc taaatataaa ctggttgtgg gcactgaggt gcattctgct atggtggcga 5100 tggaacaaca ggcgcgtact gaagttcctt tgcttattgg tatggatgtt ccgaaggatg 5160 agagactcaa accgtctaag gtgttggaga agccgaagac gcgtacattc gttgttctcc 5220 caatgcacta taacttgctg ctgcgtaagt atgtgggaat tttgtgttct agcatgcaag 5280 ttaataggca tcgtctagca tgtgctgtgg gcactaaccc atattcgcgt gattggacgg 5340 acatttatca gcgcctggct gagaaaaatt cagtggcctt gaattgtgat tatagccgct 5400 ttgatgggct cctcaattac caggcatatg tgcatattgt taattttatt aataaattgt 5460 acaacgatga acattctatc gtgcgtggca atcttttgat ggctatgtat ggtaggtgga 5520 gtgtgtgtgg gcagagagtt ttcgaagtcc gcgctggcat gccctctggg tgtgcgctca 5580 ccgtgatcat caattcactt tttaacgaaa tgttgatcag gtatgtttat cgcatcaccg 5640 taccacgccc ccttgtaaat aattttaaac aggaggtgtg tttgattgtt tatggtgatg 5700 ataatttaat ttctattaag ccggacacca tgaaatattt taatggtgag caaatcaaaa 5760 ccattctggc taaatataaa gttaccatta ctgatggcag tgataagaac tcacctgttc 5820 ttagagccaa acccttgaaa cagctcgatt ttttgaagag aggtttcagg gttgaaagtg 5880 atgggagggt gcttgcccct ttagatttgc aagctatcta ttcttccctg tattatatca 5940 atccgcaggg aaatatatta aaatctttgt ttttgaatgc tcaagtcgct ttgagagagt 6000 tatatctcca tggcgatgtt gagcaattta ctgctgtcag gaatttttac gtcaatcaaa 6060 ttggcggaaa tttcttgagt ctaccccagt ggaggcactg cgcttcgttc catgatgaac 6120 aatattctca gtggaagccg tggtctcccg ttaaattctt ggaggtagat gtgcccgatg 6180 ctaaattttt acagcataag gcgccagcta ctgccctctc gattgttgct gataggcttg 6240 ctgttgcagg acctggctgg cgtaataaag atccagacag gtatctgtta gtgagcctta 6300 ccagcttgaa agcaaatgag ggtggattat acttccccgt agactacggg gagggtacag 6360 ggcagcaagc cacggaagct tccattagag cttatcgtag gctaaaggat catcgcgtac 6420 gccatatgcg cgattcctgg aatgagggaa agacaatcgt gttccgatgc gaaggtccct 6480 ttgtttcagg atgggcagct gccatttcct tcggtactag cgttggaatg aatgcccaag 6540 atctcttaat caattatggt atacaaggtg gcgcccacaa ggaatatctg ggacgctact 6600 ttgttggtgc tcgttttaaa gagctggaga ggtatgaccg accttttcag tctcgtataa 6660 ttgcgagcta aatcctcttt gaggcgagta gctgccgtta gcagcttcca aaaggtggcc 6720 tcttaattag cttttaatag gggttatcca gccttaagca agctggcacc ggtcctgatg 6780 gactaccagg aaagcacctg gtttggaaga attcgagtaa aattcttaaa tcttgtttac 6840 tcgtgactta tagtacattc aagaggaatg actcatgttt tgtttattta catgatggca 6900 taaagagtta acggctcata tggtgctcat tacgttcaag tgttgaagga tccaatagcc 6960 ttgaactgtg gtgccatgtg aggaaatcca cgttatctct gattgtcaaa atagactagt 7020 ctaggagacg ataaatccta tgtgggtgag tcccactctg gcgagacacg cagtgccttt 7080 tatttgtttg aggttatcaa acatcatatc ttgagtctgc atttaaattc gaataatgta 7140 gttgtcatag cctaccgatg agtctgcgag aaaggttcca tgaggacttg ggttggctaa 7200 cccccactta atctcttcat agatcattcg acagtgtgtc gagaaactat gggttttgac 7260 accttaaggg aagcgagagt tctcgtatgg atatcactct aatcatggta cttaccatgc 7320 catgtttaga gtaaatcatc gcctcgacgg tgtgatactt tccttaagtt ctagtcaaac 7380 gatagtttcg ttgatcgtat gtgaagcgtg gagcgagttc gaaacgaact gattacccga 7440 ggtaggacgc tattgttcca ggcgtttctt atgggcataa gctgtaaact tggtttcgca 7500 agccatgcag cacctcccgt tacttgtgta ctttctaggg gctcccggcc ttccttccgg 7560 tacaatacct agtgaagcaa gtaattgcgt tgagggataa gagtagcatg ttcctactta 7620 aggaaggaat atgtcgtgtt ttccacacgt tagtgttgca atgctgtaat ggcactgcag 7680 tgcaggaatg gttcccagcc actttttctg ggattctaat cgtacgtcac aattgtgtgt 7740 gtatcgttga cggaggagta gcgatcctct accacgcgag tctggaagtg attaccaggg 7800 cctaagatgg ccagcacacg gtacgattaa atttagctgt aatgtagtgg tatgttaagt 7860 tgagactaac ttacccgtac gagttaaact ctaagatgga tgtgtgttct gccatcttag 7920 aggaagtaga tgtgttttta ccaatctgag acgagccgtt aattcggtgc tttaatacgt 7980 caatgataat actcgtgcag ttgcagctgc acgagtatgt tggtacacac agtctactcg 8040 gatacggtcg agttaccctc acaataggga ttactctctc aatcttaact actgcaagga 8100 cgttgttttc gcagggtttt gttggtccgt ttgtgtttca aaacgctgct ttgcaatttt 8160 cttttttgtt ttattgcttt cgtagtgtcg aactttgtcc aagttcataa aagc 8214 //