ID L18870; SV 2; linear; genomic RNA; STD; VRL; 3840 BP. XX AC L18870; XX DT 11-JUN-1993 (Rel. 36, Created) DT 20-JAN-2017 (Rel. 131, Last updated, Version 8) XX DE Carnation ringspot virus RNA dependent RNA polymerase, replicase-associated DE protein, coat protein, and p11K protein genes, complete cds. XX KW . XX OS Carnation ringspot virus OC Viruses; Riboviria; Tombusviridae; Regressovirinae; Dianthovirus. XX RN [1] RP 1-3840 RX PUBMED; 8113736. RA Ryabov E.V., Generozov E.V., Kendall T.L., Lommel S.A., Zavriev S.K.; RT "Nucleotide sequence of carnation ringspot dianthovirus RNA-1"; RL J. Gen. Virol. 75(Pt 1):243-247(1994). XX RN [2] RC Sequence updated by submitter RP 1-3840 RA Sit T.L., Lommel S.A.; RT ; RL Submitted (11-MAR-1999) to the INSDC. RL Plant Pathology, North Carolina State University, Box 7616, Raleigh, NC RL 27695, USA XX DR MD5; aa943c7c756119fbbfad51b84cca12f1. DR EuropePMC; PMC112128; 10864632. XX CC On Mar 11, 1999 this sequence version replaced gi:304449. XX FH Key Location/Qualifiers FH FT source 1..3840 FT /organism="Carnation ringspot virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12268" FT 5'UTR 1..57 FT CDS join(58..765,765..2366) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA dependent RNA polymerase" FT /note="p88K fusion protein" FT /db_xref="GOA:Q66096" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:Q66096" FT /protein_id="AAA20212.2" FT /translation="MAIFELFSFDIDKLLVWVSKFSPGKILSAICRLGLDSWNNFRKWF FT WGLNFDKHEWAVDHFMPLMPRFSSDMDEVAKRIVTPKSKPKLEDCLEIDTAVEECFNEE FT CFEPQEDGSMKLKRVAAPQQIKRVRTGMIEDAISAVEARIRNRHMIMGDDMGLVDEAAV FT RATAMDICGEYKINEHHTRCIIYAAAYRAMTPDQESIDATKMAYNPKSQARRDLVSILR FT KNISFGGFKSLEDFLSAPVSFPVEDAPYQILGIPEIKVADKRASRVCKFKRVVGLPSLS FT AGQSVCVHKTSLHNMIVSLEQRVFRVKNETGEFVVPPQPSKGAFDSISYFREAWKKKLY FT SKGPVVKSSIDDVVACYSSEKKKLYQKGAATLSHRPLHWRDSKVRAFIKVEKLECDKKA FT PVPRTIQPRSKRYNLCIGRYLRLNEKRMLDAIDAVFGEKTVLSGLDNKAQGRAIAKKWS FT KYESPIGIGLDASRFDQHCSKDALKFEHSFYRECFPDDKTSPDLLDWQLENEGSALMPT FT ESLVKYRTRCRMSGDINTGLGNKILMCSMVHAYLKEVGVNASLANNGDDCVLFCEKGDF FT NRINDSLREWFLCRGFNMVVEEPVECLERVVFCRSQPVCVATKWAMVRQLGSLSRDCFS FT TQNWLNPTTFRDAMNALGQCNGIINDGVPVHMAQAKRMYAAGGNRKFDLKALHKQMEYS FT WRDRLGARTNLLWSEVEDSTRLSYFRAFGIEPAVQRIVEGYFSESKISEEGRQTNFLPT FT HYSRLHKDLLVPRYLN" FT CDS 58..768 FT /codon_start=1 FT /product="replicase-associated protein" FT /note="p27K protein" FT /db_xref="GOA:Q66096" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:Q66096" FT /protein_id="AAA20211.1" FT /translation="MAIFELFSFDIDKLLVWVSKFSPGKILSAICRLGLDSWNNFRKWF FT WGLNFDKHEWAVDHFMPLMPRFSSDMDEVAKRIVTPKSKPKLEDCLEIDTAVEECFNEE FT CFEPQEDGSMKLKRVAAPQQIKRVRTGMIEDAISAVEARIRNRHMIMGDDMGLVDEAAV FT RATAMDICGEYKINEHHTRCIIYAAAYRAMTPDQESIDATKMAYNPKSQARRDLVSILR FT KNISFGGFKSLEDF" FT stem_loop 759..851 FT misc_feature 759..765 FT /note="frameshift element" FT CDS 2367..3404 FT /codon_start=1 FT /product="coat protein" FT /note="p37K protein" FT /db_xref="GOA:Q66098" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q66098" FT /protein_id="AAA20213.1" FT /translation="MTSRQSRKSKMALVPKQRQNLARTVKTVKIPYATTQIVTTSNPPK FT KGQIKVSGRQLFMSLITSSSFVVNNGLPTPSLLSLNPSNQYLFPSLAYEAANYDLYRFA FT KLRLSYVHDTNATVSGRVSLMWDRDSQDVPPNSRVSIPQCTKSVSTAVYESCAIDLPID FT DVWRFVRDTDVVDRKLSDYGQIFTAVHSGSTTDEVGDVYLDYTIELKDRQPTASMVQTA FT YWDVSGVLAKSEGPRYFSPSSDVTFTSTMAAISLQLSGIFNVQVVVTCTTAGTLVVGPN FT ISVIGAMYSQFTTPRYFAQPVLACTGVPNGTPSVSMTGFAGITRITLVITRLPPETRCR FT NRQFP" FT CDS 3495..3797 FT /codon_start=1 FT /product="p11K protein" FT /db_xref="GOA:Q66099" FT /db_xref="UniProtKB/TrEMBL:Q66099" FT /protein_id="AAA20214.2" FT /translation="MLSSYLRRREPTRHKSVIRILRNRQSATLVGGGRRVGFSLGVVPK FT DNLPTWWRHQACCGVIESRTLVLAVVKFVSVLFFCLYVGSVCVTRTDGSRKPAVK" XX SQ Sequence 3840 BP; 1037 A; 903 C; 972 G; 928 T; 0 other; actctaacca agttattcaa cttatccatt tgactcatac acactcctta ctactcaatg 60 gctatttttg agttgttctc tttcgatatt gataagttgt tggtgtgggt gtccaagttt 120 agtcctggaa agattttgtc ggctatttgc cggctgggat tggacagttg gaacaatttc 180 cgaaaatggt tttggggttt gaatttcgac aagcatgaat gggcggtaga ccattttatg 240 cctctcatgc caaggttttc tagtgacatg gatgaagttg caaaacgtat cgtaacccca 300 aaatccaaac ccaaactcga ggactgtctt gagattgaca cagccgttga agaatgcttc 360 aacgaagaat gctttgaacc acaagaagat ggttcaatga aacttaagcg tgtcgccgcc 420 ccgcagcaaa taaaacgtgt gcggacgggc atgatcgaag acgccatctc tgccgtagaa 480 gctagaatca ggaatcgcca catgataatg ggtgacgaca tgggactagt ggacgaggcc 540 gctgttaggg caaccgccat ggacatctgt ggtgagtaca aaatcaatga acaccacacc 600 aggtgtatca tttatgccgc agcgtatcgt gcgatgactc cggatcaaga atcgattgat 660 gccacaaaaa tggcatacaa tccgaagtca caagcgagaa gagacctggt ttccatcctt 720 cggaagaaca tatctttcgg aggattcaaa tccctcgagg atttttaagt gcccctgtca 780 gttttccggt tgaagatgcc ccctaccaaa tcctcggcat cccggaaatc aaggtagctg 840 acaagcgggc gtctagggtc tgtaagttta aaagggtcgt aggtttgccc agtctgagtg 900 ctggacaatc ggtttgtgtc cacaaaacca gcctacataa tatgatagtt agtttagaac 960 agcgcgtttt ccgtgtaaaa aatgaaacag gagaattcgt tgttcctccc caaccatcca 1020 aaggtgcctt cgattcgatt tcttatttca gggaagcctg gaaaaagaaa ttgtattcca 1080 agggaccggt cgtcaaatcc tcaattgacg acgtggtagc gtgctattct tccgaaaaga 1140 agaaattata tcaaaagggc gctgccacac tgagccatcg cccgttacac tggagggact 1200 ccaaagtccg agctttcatc aaagtcgaaa aattggaatg tgacaagaaa gcaccagtgc 1260 cgcggacgat ccaaccacgc tccaaacgat acaacctttg tattggtagg tatctgcgcc 1320 tcaatgaaaa gaggatgctg gatgccatcg atgctgtatt cggagaaaag acggtcttgt 1380 ccgggttgga caacaaggct caagggcgtg ccatcgccaa gaaatggtct aagtacgagt 1440 cccctattgg gattggactt gatgcaagtc gattcgatca acactgttcg aaagatgcgc 1500 tcaagttcga acactccttt taccgggagt gttttcctga tgacaagacg tcgcctgatc 1560 tcctggattg gcaactagaa aacgagggaa gtgctttgat gccaactgag agcttggtaa 1620 agtataggac caggtgtcgc atgtcgggcg acattaacac aggactgggt aacaagatac 1680 tcatgtgcag catggtccac gcttatctga aagaggtagg cgtaaatgct tcgttagcca 1740 ataatggtga cgactgtgta ctcttctgtg agaagggaga cttcaacaga attaacgatt 1800 cgcttcgaga atggttcctg tgccgaggat tcaacatggt agttgaagag ccggtcgaat 1860 gcctcgaaag ggtcgtattt tgtagaagtc aaccggtttg tgtggccacc aaatgggcaa 1920 tggtcagaca attgggaagt ttgtcgcgag actgcttttc aacacagaat tggttaaacc 1980 ccacgacgtt ccgagatgct atgaatgcgc ttggtcagtg taacggcatc atcaacgatg 2040 gtgtcccagt gcacatggct caggcgaaac gcatgtatgc agcaggaggc aatagaaaat 2100 ttgacctcaa agcactccat aaacagatgg agtacagctg gcgtgataga ctcggagcga 2160 ggacgaacct attgtggagt gaagttgaag acagtacacg actgtcctac ttcagggcat 2220 tcggtataga accggccgtc cagagaatag tagaaggtta cttttcggaa agcaaaattt 2280 ctgaagaggg gcgtcaaaca aactttttac caacacacta ttctcgactt cacaaggatt 2340 tactcgtacc tcgttatctt aactagatga cgtctagaca atcccgaaaa tccaaaatgg 2400 cgctggtgcc taaacagcgt cagaacctgg ctcggacggt gaaaactgtc aaaatacctt 2460 acgcaaccac ccagatagtc accactagca acccaccgaa gaagggacaa atcaaagtca 2520 gtggaagaca attgttcatg tcgctgatta cctcgtccag ctttgtggtg aacaatggcc 2580 tgcctactcc cagtttgctc agtctaaatc ctagtaacca gtacctgttc ccctctctag 2640 cttacgaggc ggcgaactac gacctgtatc gatttgccaa gttgcggctt tcatatgtac 2700 acgacacaaa cgccaccgtg agcggtcgcg tttcactgat gtgggacaga gactcccaag 2760 atgtaccacc caacagtcgg gtttcaatac cccaatgcac caaatcggtg tctacggctg 2820 tgtatgaaag ttgtgccatc gacctcccta ttgacgatgt ctggaggttt gtaagggata 2880 ccgacgtagt ggaccgcaag ctctccgatt atggacagat cttcacagcc gtccacagtg 2940 ggtcaaccac tgacgaggta ggggacgtgt acctggatta tactattgag ttaaaagaca 3000 gacaacctac tgcatcgatg gtgcagacag catactggga tgtatcaggg gtcctcgcca 3060 aaagtgaggg tcctaggtac ttctccccta gtagtgatgt gacattcacg agtaccatgg 3120 cagccatttc cctgcagttg tcgggcatat tcaatgtaca ggtggtagtc acttgtacca 3180 ctgcaggaac tctggtcgta ggtcctaata tatcggtaat cggtgccatg tattcccagt 3240 tcacaacccc aaggtatttt gcacagccag tgttggcttg tactggtgtc cccaatggca 3300 ctccgtccgt cagcatgacc ggtttcgccg ggatcacgcg tattactttg gtaatcacgc 3360 gtcttccgcc ggaaacgcgt tgccgtaacc gtcagttccc gtagccgcca acaaagttgc 3420 aagagcgggc gttgctagcc tttgccgacc ctgcttcctg gcgcagcaaa tccagagaaa 3480 aacagagtgt taggatgttg tcttcttacc ttaggagacg agaacctacg aggcacaagt 3540 cagtgatccg gatcctgaga aacaggcagt ccgcaacctt agtagggggc ggcagacggg 3600 tgggcttcag ccttggggtg gtacccaagg ataacctgcc gacgtggtgg agacaccagg 3660 cgtgttgtgg cgtcatcgaa tcacgaacac ttgtgttggc cgtagttaaa ttcgtgtcag 3720 tccttttctt ttgtttgtat gtggggtcag tgtgcgtcac acgcaccgac gggagtagaa 3780 aacccgccgt caagtaaaaa cagggaaacg aacaccggtg ggtataaccc ccgggcccct 3840 //