ID L14546; SV 1; circular; unassigned DNA; STD; VRL; 7161 BP. XX AC L14546; XX DT 04-JAN-1994 (Rel. 38, Created) DT 25-FEB-2024 (Rel. 144, Last updated, Version 3) XX DE Cacao swollen shoot Togo B virus, complete genome. XX KW capsid protein; ribonuclease H; movement protein; aspartyl protease; KW reverse transcriptase. XX OS Cacao swollen shoot Togo B virus OC Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; OC Ortervirales; Caulimoviridae; Badnavirus; Badnavirus etainflatheobromae. XX RN [1] RP 1-7161 RX DOI; 10.1006/viro.1993.1518. RX PUBMED; 7690503. RA Hagen L.S., Jacquemond M., Lepingle A., Lot H., Tepfer M.; RT "Nucleotide sequence and genomic organization of cacao swollen shoot RT virus"; RL Virology 196(2):619-628(1993). XX DR MD5; 423a1a075501292794be138fe0845f6c. DR EuropePMC; PMC5649073; 29052506. XX FH Key Location/Qualifiers FH FT source 1..7161 FT /organism="Cacao swollen shoot Togo B virus" FT /mol_type="unassigned DNA" FT /db_xref="taxon:2560363" FT CDS 441..872 FT /codon_start=1 FT /note="ORF1" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:Q66231" FT /protein_id="AAA03169.1" FT /translation="MSSRWENSIQEWYEKSHTANLEYLDLASTSKVTNNQLAHNLAVTF FT DRVNLGNRVFIKNLKQIQESILELNTRVDTIEVALRRLTKTFRESKPLTESEVRKLVEE FT IAQQPKIVEKQALEISQQLEQKLEKVEKLLHKLDQWVGQ" FT CDS 869..1267 FT /codon_start=1 FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:Q66232" FT /protein_id="AAA03170.1" FT /translation="MTDSPAYQEALKEAEKVDPPAVGITTSTGVTAVQGFKTVIKQNNV FT QICLLAVIADKLEELIQDQKKARKDKAKEVAIPEDLITKLQGLSIQEKGEAKVTRKPEP FT KGTLFGFKDPYKILAAEKAKITLKPVKE" FT CDS 1272..6776 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF3" FT /db_xref="GOA:Q66233" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:Q66233" FT /protein_id="AAA03171.1" FT /translation="MSRARPQHPVPSVTTTTSEQNREGPLYEDQIRDYRRGQRRIFNLR FT RRARRLRRSMMGSRYQETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYT FT HRSEESVLCVGGSQVDRAFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALV FT VFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGDFARNVQLSILTRGYENWQN FT GEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKAIAGKKMNLQHLRNQQWIL FT RPPQTDITPMQPRSVETRNLVDGSISIRFHDYEAATSASRPHYNEEDEEVESETESEIR FT EHTIAVWIGEEEIPDQTGRKKVWEESSNGNGRFFRYYTPPPTFEGQIIATGWGSDDDNE FT KTPPKWDESPDEEGPTEPIWDQEEEEDEYDPNVYRAYLQKEEDEWQEITASLREEMEYP FT KRRPQTEMAFSETVDYTPPGDTMMTPVGYPPASSSRSTVTTPSRPPLFEGRTTHVPRFL FT KRDEYTEWWQLPSSQGTTGALFVMPKQMGLFHEVFSRWESITKNYVAAQGFTDPTEKME FT FMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQIKRIFSLEDPASGST FT RIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPPELGHR FT MKEAFQKEYSGNEVGVFPRILFAYRYLEQECKDAAFKRSLKSLSFCKDMPLTGYYDKTS FT KYGMRKSRTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNQRRDVKRVA FT IFEGIDLPEGFDIVSVEEGEEESDAIYSISENEDGELDTEVVHEKVFMMREEDQSYWLG FT KTNHWTAMVRVSSQQYHCMHQWEHNKEILVVAHINCHFCKQPTQLRSRIHCPTCQLTSC FT FMCAPIYCNMIVQQQPKPPVPFNTHTLLQQQAAYIQWLEKENQRLTEAVEFYKKEAEEL FT RLERDLEQDRRSLEPTLLDKGKKVQILDPDEDQHTAYLEEDTISRVIGHTVEQQEVRKP FT VKKGNMLYNLDVVLHIPEVGRPIKVKAILDTGATTCCININSVPQTAIEQNTFLVQFRG FT INSTQSVDKKLKYGRMTISNHQFRIPYCYAFPLSLGDGIEMILGCNFIRGMYGGLRIEG FT HTITFYKNVTTIQTRLAAVMVGGTTASELGGGEESKSDSESMFDLSETEEFDSETHQQI FT VSHVAAQAQQQKLDPKLQQLMVQLQDQGFIGENPMQHWAKNKILCRLDIKNPDLIIEDK FT PIKHLTPAMEKQFQKHIKALLDIGVIRPSKSKHRTTAFIVESGTVIDPVTKKTIHGKER FT LVFNYKRLNDNTEKDQYSLPGIQTILKRVGNKKVFSKFDLKSGFHQVAMAEESIPWTAF FT WVPQGLYEWLVMPFGLKNAPAVFQRKMDQCFKGTEEFIAVYIDDILVFSENMAEHTKHI FT GIMLKICQENGLVLSPSKICLAQREIEFLGTVISQGQMKLQAHVIKKIVNKANIELETT FT KGLRSFLGLLNYARIYIPNLGRKLSPLYAKTSPTGEKRFNRQDWHLIKEIKDMVQKLPN FT LAIPPARCYIIIESDGCMEGWGAVCKWKLAKEDSRTTEKICAYASGKFGVVKSTIDAEI FT YALIKALESFKIFYLDKKHLVVRTDCQAIVTFYNKTSTHKPSRIRWITFSDYITGLGVP FT VTIEHIDGKENQLADTLSRLVYTTWNQSQTHQPEEEELEKSQHLSFAGLAIPIAWPMMG FT SYNKRRTPLLTGQSLWQRNKPSQHSSTASKSRQPRKHYWPYVTYRAYSTSRETIWPLLP FT LETTGLATDCQLPNKTQPP" FT CDS 2374..2715 FT /codon_start=1 FT /note="ORFx" FT /db_xref="UniProtKB/TrEMBL:Q66234" FT /protein_id="AAA03172.1" FT /translation="MEMEDSSGITLLHQHLKGKSLLQDGEVMMIMKKLLQNGMKAQMKK FT DPQNPYGIKKKKKMNMIPMSIGHTYKRRKMSGKKSQLVSGKKWSTQKDDHKQRWRSLKQ FT STILHLVTL" FT CDS 6434..6829 FT /codon_start=1 FT /note="ORFy" FT /db_xref="UniProtKB/TrEMBL:Q66235" FT /protein_id="AAA03173.1" FT /translation="MEPVPNSPTGGRRAGEVPTSQLRGASYPYSLAYDGLLQQKKDAIT FT HGTITLATEQAISAQLYRIEEQAAKKALLALRDLQGVLHFKRDYLAATATRDNWASDRL FT PAAQQDSAALDQHAGVINAIIERAVQP" XX SQ Sequence 7161 BP; 2410 A; 1527 C; 1630 G; 1594 T; 0 other; tggtatcaga gcaaggttaa acatggtcat gtccggctaa aaacctagtg ttaggttcgg 60 ggaaagaggt ctactgtgtg tttcaaatat ccatttgtta ttatccaaac agtgtctgtt 120 ccttgtgttt aggatggaaa cctgaggttg cgaactacgt gttcaaagga gtgatcattt 180 caaaaggaat gtcattctaa ctatcgtatg ctctagactt gccctgttat agcaacagag 240 gatcctgtct atcagaaaat agtttgaaca attccgatga tctctcatac tttaggtata 300 acaacgccac gtataaggag ctaattcttt tgtaaaagac gtaacccaga agagagtacc 360 cagagagggg aagacttggg gagaaggtga acagaagaga gagcttactg tacctggtac 420 tgttatagga agattttgtt atgtccagtc gctgggagaa tagtatacaa gagtggtatg 480 agaagtcaca cacagcaaac cttgagtacc ttgacctagc atctactagt aaagtgacca 540 acaaccagtt agcacataac cttgcagtaa cctttgatag agtaaattta ggtaaccgag 600 tttttattaa aaacctgaag cagattcaag agtctattct tgaattaaac acccgtgttg 660 atactataga agtagctcta aggaggttaa ccaagacctt cagagaaagc aaaccactta 720 ccgaaagtga agtccgtaag ttggttgaag aaattgctca acaacctaag atcgtcgaga 780 aacaagcact cgagatctct caacaacttg agcagaaact agagaaggtg gaaaagctct 840 tgcacaaact tgaccagtgg gttggtcaat gactgatagc ccagcctatc aagaagcttt 900 aaaggaagca gaaaaggttg acccaccagc agttgggata acaacctcca ccggagtaac 960 agcggttcaa gggtttaaaa ccgttattaa gcagaacaac gttcagatct gcttactcgc 1020 tgtcatagca gataaactag aagagctgat acaggatcag aagaaggcca ggaaggataa 1080 ggcaaaggaa gttgccattc cagaagactt aatcacaaaa ctccaaggat tatctattca 1140 ggagaaagga gaggcaaaag tcacaagaaa acccgagcca aaaggaacgc tgtttggatt 1200 caaagatcct tacaagatcc tagcagcaga aaaggctaag atcacactta agcctgtgaa 1260 agagtagaaa gatgagtcga gcacgaccgc aacacccagt tcctagtgtg actacaacca 1320 ctagtgagca aaacagggaa ggacctctat acgaggatca gatcagagac taccgaagag 1380 gacaaagaag gatctttaac cttcgaagaa gagccagaag gttaagaaga tcaatgatgg 1440 ggtctagata tcaagagacc ctagaacaag aaatagatcc acagacaaca ctgaggttgt 1500 ccatgcaaga acgagcaaga ctagtaccag ctgaggtact gtacagatcc aggcgagaca 1560 ctgttcatca cagagtctac acacaccgat ctgaagagtc agtcctatgt gttggcggaa 1620 gccaagtgga tagggcgttt atacagcctg aaagtctgga acaactccaa aggacaggaa 1680 tgtcctttat tcatatcgga attctgcaag tgaggattca gattctgcac cgacaagaag 1740 aaggcaccat ggccttggta gtattcaggg ataacagatg gtcgggagat cagtctattt 1800 tcgctcaaat ggaaatagac ctaacaaaag gaagccaatt ggtgttcgtt ataccagaca 1860 ccatgatgac catcggagac tttgcccgga acgtacaact atccatcctc acaagagggt 1920 atgaaaattg gcagaacgga gaagccaatc tcctgataac acgtggcatg acagggcgac 1980 tgtccaacac tcccaatgtc gcctttgctt accaaattgc cagcgcaaca gattacttgg 2040 caagtcacgg tgtaaaagct atcgcaggaa agaaaatgaa tctgcaacac ctgcgaaacc 2100 aacagtggat actacgtcca ccacaaacgg acatcactcc aatgcaacca agatcggttg 2160 aaacaagaaa tctcgtagat ggaagtatct ccatcagatt ccatgattat gaggcagcta 2220 cttcagcttc aagacctcac tacaatgagg aagatgaaga agtggaatca gaaacggagt 2280 cagaaataag ggagcatact attgcagtct ggataggaga agaagaaatt ccagaccaga 2340 cagggagaaa gaaggtatgg gaagaatcta gtaatggaaa tggaagattc ttccggtatt 2400 acactcctcc accaacattt gaagggcaaa tcattgctac aggatgggga agtgatgatg 2460 ataatgaaaa aactcctcca aaatgggatg aaagcccaga tgaagaagga cccacagaac 2520 ccatatggga tcaagaagaa gaagaagatg aatatgatcc caatgtctat agggcatact 2580 tacaaaagga ggaagatgag tggcaagaaa tcacagctag tctcagggaa gaaatggagt 2640 acccaaaaag acgaccacaa acagagatgg cgttctctga aacagtcgac tatactccac 2700 ctggtgacac tatgatgaca cctgtcggat accccccggc ctcgtcatca agatcaacag 2760 tcacaacgcc aagtagaccg ccactttttg aaggaaggac cacacacgtg ccacgattcc 2820 taaaaaggga tgagtacaca gaatggtggc aattaccatc atcgcaaggc acaacagggg 2880 cgttatttgt aatgcctaaa caaatgggcc tattccatga agtcttctcg agatgggaat 2940 ccatcaccaa aaactacgtt gcggcccaag gttttacgga cccaacagaa aagatggagt 3000 tcatggaaaa tctgttagga gaaacagaaa agctaacctg gatccaatgg agaatgaatt 3060 acgaggctga ataccagcag ctgctaaccc aagcagatgg gcgacaagga acccaaaata 3120 tcttgtccca gatcaagaga atcttttctt tagaagaccc agcctctgga tccacgagaa 3180 tacaagatgc tgcatacaga gacctggaga gattaacctg ccacaacata aaagacatag 3240 ttcaatttct aaatgactat ggaaggcttg cagcaaagag tgggcgactg ttcttaggaa 3300 ctgagctcag tgaaaagtta tggatgaaga tgccaccaga actagggcat cgaatgaaag 3360 aagcatttca aaaggagtat tcaggcaatg aagtaggagt cttcccgcgc atcttgtttg 3420 cctacagata tctggagcaa gagtgtaaag atgcagcttt taagagaagc ctgaagtcat 3480 taagcttctg caaagacatg ccattaacag gatactatga taaaacctcc aagtatggca 3540 tgagaaagtc aagaacctat aaaggaaaac cacatgcatc acatgcaagg gtggagaaga 3600 ggaagcactt gatcagaaat aaaaagtgca aatgttatct ctgcggggat gaaggacact 3660 ttgcccggga atgccccaat cagaggagag atgtcaagag agtagccatt tttgaaggaa 3720 ttgatcttcc tgaaggcttt gatatcgtct cagtagaaga aggagaagaa gagtcagatg 3780 ctatttatag catatctgaa aatgaagacg gagaacttga cactgaagta gtccatgaga 3840 aagtcttcat gatgagagaa gaagaccagt cctattggtt aggaaagaca aaccattgga 3900 cggctatggt gcgagtcagc agtcagcaat atcactgcat gcaccaatgg gagcacaata 3960 aagaaatatt agtggtggcc cacatcaact gccacttctg taagcaaccc actcagttaa 4020 ggagtcgaat acactgtccc acgtgtcaac tcaccagttg cttcatgtgt gccccaatat 4080 actgcaatat gatagtccag cagcagccta aaccaccagt accgtttaat actcacacac 4140 tgctccaaca acaagcggct tatatccagt ggttggaaaa agaaaatcag cggttaactg 4200 aagccgttga attctataaa aaggaggctg aagaattaag gctcgaaaga gacttagagc 4260 aagatagaag gagtctggaa cctacgttgt tagacaaagg aaagaaggtt cagattcttg 4320 atccagatga agatcagcac acagcgtatc ttgaagaaga taccatcagc cgtgttatcg 4380 gccatactgt ggaacaacaa gaggttagaa agcccgttaa aaagggaaac atgctctata 4440 acctcgatgt ggtgttacat atcccagagg taggaagacc tatcaaagtc aaagcaattc 4500 tagacactgg agcaaccaca tgctgtataa acatcaactc tgtaccacaa acagcaattg 4560 aacagaacac ttttctggta caattccgag gcataaattc cacgcaatct gtggataaga 4620 aactcaaata tgggaggatg actatcagca atcaccagtt cagaatcccg tactgttatg 4680 cctttcctct atcccttggt gatggaatag agatgatcct agggtgtaat ttcatccgtg 4740 ggatgtatgg cggtttgcgt attgaaggtc acacaatcac cttctacaaa aatgtcacta 4800 caatccaaac ccgccttgct gccgtaatgg ttggtggtac aaccgcttct gagttagggg 4860 gaggggagga gtccaaatcc gattctgaat ccatgtttga cctctcagaa acagaagaat 4920 ttgactcaga aacccaccag cagattgtga gtcatgttgc agcccaagcc caacaacaaa 4980 aattggatcc aaaactccaa caactaatgg tccaacttca ggatcagggc tttattgggg 5040 aaaatcctat gcaacattgg gctaaaaaca agatcctatg tcgactagat atcaagaatc 5100 ctgatcttat aatagaagac aagcccatca agcatctaac accggccatg gagaaacagt 5160 tccagaagca catcaaagca ctcctggaca ttggtgttat caggcctagt aagtcaaaac 5220 acaggactac ggccttcatt gtggaatcag gcactgttat tgatccagtc acgaaaaaga 5280 ctatacacgg taaagaacgt ttggtcttca actacaaacg cctgaacgac aacactgaaa 5340 aggaccagta ctcgctaccc ggtatacaga ccatcctaaa gcgggtgggc aacaagaagg 5400 tcttcagcaa gttcgatcta aaatcgggct tccatcaagt tgccatggcg gaagagtcca 5460 tcccttggac tgctttctgg gtaccgcagg gcctttatga atggttagtg atgccctttg 5520 ggctcaaaaa cgctcctgca gtatttcaaa gaaaaatgga ccaatgcttc aaaggtacag 5580 aagaattcat tgcagtgtac attgatgaca ttttggtctt cagcgaaaat atggcagagc 5640 ataccaagca cattggaatc atgctcaaga tctgccaaga aaatgggctg gtactaagcc 5700 caagtaagat atgtcttgcc caacgcgaga ttgaattttt gggcacagtc atctcacaag 5760 gacaaatgaa gcttcaggcc catgtaatca aaaagatagt caacaaagcc aacatagagc 5820 tagaaacaac aaaaggcctg agatcctttt tgggcctcct caactatgcc cgtatctaca 5880 tacccaacct gggtagaaag ctaagtccac tatatgccaa gactagtccc accggagaga 5940 aaaggtttaa tcgacaagat tggcatctga taaaggaaat caaagatatg gtccaaaagc 6000 tcccaaacct cgctatccca ccagcaagat gctacattat cattgaaagc gatggctgca 6060 tggaaggatg gggggccgta tgtaagtgga aattagcaaa agaagattcc cgcactactg 6120 aaaagatttg tgcgtacgct agtgggaaat tcggtgttgt caagtctacc atcgacgccg 6180 aaatttacgc actcataaaa gcattggaat cttttaaaat cttctatctg gacaaaaaac 6240 atttggtggt gcgaacagac tgtcaagcga tagtgacatt ttacaacaag acaagtactc 6300 ataaacccag tagaatacgt tggatcacct tttccgacta tataacgggg ttaggagttc 6360 cggttactat cgaacacata gacggaaaag agaaccagtt ggctgataca ctaagcagac 6420 tcgtgtatac aacatggaac cagtcccaaa ctcaccaacc ggaggaagaa gagctggaga 6480 agtcccaaca tctcagcttc gcggggctag ctatccctat agcttggcct atgatgggct 6540 cctacaacaa aagaaggacg ccattactca cgggacaatc actctggcaa cggaacaagc 6600 catctcagca cagctctacc gcatcgaaga gcaggcagcc aagaaagcac tattggccct 6660 acgtgaccta cagggcgtac tccacttcaa gagagactat ttggccgcta ctgccactag 6720 agacaactgg gctagcgaca gactgccagc tgcccaacaa gactcagccg ccctagacca 6780 acatgctggc gtgattaacg ccattattga aagggctgtc caaccctagt ttggacggta 6840 gtagtaggtg taataataat agttaggtgt gctttacttt tccaagctgt cactcattat 6900 agagtagaca tgatgatcga cgatggggcc caatgagcac ccggatcacc attctcccat 6960 ctataaatga gagtttgtaa ggcttagcca tcagagagtg aaaactactc aactgatcct 7020 aagtgttaga gtttgtattt tcctaagagt ttgtaagatt tttatgaaat aaagagtcta 7080 ctttgtgttt atctctttgt ttcacctggg atttaaacag tttttgtttt tccgcaccat 7140 cggtttgcgc ccgatcgatg t 7161 //