ID L13218; SV 1; linear; genomic RNA; STD; VRL; 6277 BP. XX AC L13218; XX DT 04-JAN-1994 (Rel. 38, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 7) XX DE Gardiavirus genomic sequence. XX KW . XX OS Giardia lamblia virus OC Viruses; Riboviria; Totiviridae; Giardiavirus. XX RN [1] RP 1-6099 RX DOI; 10.1073/pnas.90.18.8595. RX PUBMED; 8378334. RA Wang A.L., Yang H.M., Shen K.A., Wang C.C.; RT "Giardiavirus double-stranded RNA genome encodes a capsid polypeptide and a RT gag-pol-like fusion protein by a translation frameshift"; RL Proc. Natl. Acad. Sci. U.S.A. 90(18):8595-8599(1993). XX RN [2] RP 6060-6277 RX DOI; 10.1016/0378-1119(95)00092-K. RX PUBMED; 7789796. RA Wu C.H., Wang C.C., Yang H.M., Wang A.L.; RT "Sequences at four termini of the giardiavirus double-stranded RNA"; RL Gene 158(1):129-131(1995). XX RN [3] RP 1-6099 RA Wang A.L.; RT ; RL Submitted (28-OCT-1993) to the INSDC. RL Alice L. Wang, Dept. of Pharmaceutical Chemistry, University of California, RL San Francisco, CA 94143-0446, USA XX RN [4] RP 6100-6277 RA Wang A.L.; RT ; RL Submitted (08-NOV-1994) to the INSDC. RL Alice L. Wang, Dept. of Pharmaceutical Chemistry, University of California, RL San Francisco, CA 94143-0446, USA XX RN [5] RP 1-6277 RA Yu D.; RT ; RL Submitted (15-MAR-1996) to the INSDC. RL DeChao Yu, School of Pharmacy, University of California, San Francisco, CA RL 94143, USA XX DR MD5; c1d6a8201a3d156820bab229139a8c05. DR EuropePMC; PMC114643; 11602703. DR EuropePMC; PMC3597494; 23516364. DR EuropePMC; PMC3659425; 20976609. DR EuropePMC; PMC6356713; 30585188. XX CC On Jun 4, 1996 this sequence version replaced gi:576675. XX FH Key Location/Qualifiers FH FT source 1..6277 FT /organism="Giardia lamblia virus" FT /host="Portland 1" FT /mol_type="genomic RNA" FT /db_xref="taxon:29255" FT CDS 367..3027 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF1" FT /db_xref="GOA:Q67652" FT /db_xref="UniProtKB/Swiss-Prot:Q67652" FT /protein_id="AAB01578.1" FT /translation="MVWGTGYGNPSPLNPYGFASLHRGGLNPLILAPENITFDTLNTHN FT DHEETHGESPEVPKASIAPAGRQNVPVLQQNQENEDNHALGGSEDAKDEREIRFSAIKT FT LYNYYSEGPSTPIMPHLVNRLRGLDALAKIDATLTKVDMNAAYIFALRPTFPYSYGYKQ FT RFSNRRLTTSALCYARTGLSSFLTVDKTYTSNSPLKGGSRGWPIFNVDVSSHVAEPHMR FT TLSPIGLEVFNLATSQFSKTLLTASSKVFTQSLYTADILSIFGEVFLPHVMQPVSNYTP FT ILVRALLALIHILGPGSGNCSLSSSIFESSIPQFLTVSHSTNMSNRTRYCLHTRSAYKD FT MFRNGIPPQSTLPPTLAPEGSSARVLIPEALVTSPMFPWLLILVSSGPQFFLYSKDASI FT NTVDIGSRGRITSPIPDVAKLDLHRLWNLFRFDGYRYIDVVIVGADRDYVWPYQNGVYV FT HGGKGPNGTGNYGNADVHDGIGTIFSSFNNNVNVQTSDLMLGLLTLWNHITTTYATEEE FT VTMAIKIAAAFALVYPVQPIVYSGCPKAFQRHTSYYQPSSENCYATDTAEVKSVWDTVE FT LSVQVNNAMVLGMTLPFGQPTLSSAQWYNNIDKAEISMFKVGNLPLQNLDYLSLDMMEF FT YAPTTGQLYDIRSDNLILSAHRTVNLGIGYTALADFFAYLASVPAQSFYHDRMVTSPIS FT KQTYSVYERFIERFIDDFVGWDRCDLFNLDTLLGAKHIAGVASSPIPWHCSLQRCPLPI FT IMHYTGLTFGQEHITVRDVAGVEGLQQIVMRDFQGRIVVERLGTAAPSRIAVKLDWSRL FT SAWYSDTTCAIPLSDRVMEIVNYAAIWDPTQERHAQVSCTHTLAPISFRALTCLSLYSI FT RVSTLHHLMTTRAKL" FT CDS <2805..5978 FT /codon_start=1 FT /product="gag-pol fusion protein" FT /note="ORF2; translated by -1 ribosome frameshift" FT /db_xref="GOA:Q67653" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/Swiss-Prot:Q67653" FT /protein_id="AAB01579.1" FT /translation="CLVLRHNLRHPFIRSCDGDRQLRGNMGSYTGKTRTGFVYTYFSPN FT FLSSFNVSEPIFNTSINLTPPYDDTSQAVIQNLSMPQMLSFDPYYESTFYVVSADNEWI FT PTSGPAWKVPYLENVVKRSGRRLLAELRIASNNGSGDRTFLTTCKTRKGRHFTYFSAAL FT GGKILEFVCAPLSSISLQGGQTIYAPIQLQDVIPVRKEDPVPGSIYAVFKFFSEPKAWE FT ARALKSYKVRFQDLPSHIVISELKERAARSYIGSRGYVDTGFKALDIYIDILSQMELPK FT YIHEFLILLRGKVCEVSRLYKKEQVFVILLTVFSELTAIVRHRGNKSTGSMGRMWTLLS FT DFETLLGKVSYKNPSIIEEQVVPWLTSDPIPRTPDFYSTYFKTAVQFMHRTFVPVTLRS FT APPLTFHEYCGRPELWGTTGSGYIGYGKRSFNKWSIYGAYPTEEIYRLALYGDNPPLKP FT LEKPELTKVRAVISASLQSYILMSYLEYIMADTIVDKAFTTTLMNDRQLENLERHMMTM FT TGGVRVPVDQSNFDRQPDLVQIGIWQQLLFHLASASAPYRARDSVSLVISRLASTTTFP FT NLKVRMSDGDKRVLHGLPSGWKWTALLGALINVTQLLTMAELSNTLASLRSTVVQGDDI FT ALSMTDREQATQLVDTYARQGFEVNPKKFWISPDRDEFLRRVATPGIVAGYPARMMIKL FT LYQLTEPEEPSHYISMLPKLAKVPNVVQEHVKPRSDVPWSETVEELDWREALAILRHRP FT ARTSELVTQWLQLIGRFTAAHPDKRALTLLYRWFVRDLTHATKIKKRNLLVLLQQPGFW FT GGYSQSLVGLLRTTHLADMIVSELDIGLPGPRATSSRFGTSPTSLAPHYLTLIVPSSVH FT VQSQKELDLWGLCRSSKYAKHYSNIFRYYKLTLPTLVLWAQRLGDKHVTDFIRSVTLGS FT EIPKYDPHARLFTSNGVSVGMLIRIRVRHFTHRVLRRETPKCIPVIVGLYREQTLSVPE FT SVRLSEPDKILLSLQRASGYSLNLVKKILQITRKPVDHPVDARFSQAFPNNWSDLARTA FT GTFLLTVPA" XX SQ Sequence 6277 BP; 1606 A; 1576 C; 1565 G; 1530 T; 0 other; ggaaggagtg ccaggccatt accttccgcc cctgcctaac aaaactggct cgccagaggc 60 gggggggcgt ggtagacggt atgtctaggt ccagagaaag cggccgctgt taggctgcta 120 gacttcgcca cgcttacacc attgagaaca cataggtggt gtaatattat gtgtttggct 180 gcgtgtgtca cgagcacgat ctatggggga atctaaccca ggtggtgttg tgtatgatga 240 ggtacaagcc cgtcaacacc acaggtggag agggacagga gtctcatttc ccctccaaaa 300 aacagcagtg gtccgcccct catgccctat gaaacattag ggggccgaca ctagtgggca 360 agcccgatgg tgtgggggac tggatatggg aaccccagtc cgttaaaccc gtacggcttc 420 gccagcctac accggggggg gcttaatccc cttattttgg cacctgaaaa tattactttt 480 gacactttaa acacacacaa tgatcacgag gagacccatg gagagtctcc agaggttcct 540 aaggcctcga tcgcgcctgc cgggaggcag aatgtcccgg ttctccaaca aaatcaagaa 600 aacgaagata atcacgcgct gggcggtagc gaggacgcca aagatgagcg cgaaatacga 660 ttctcagcca taaaaactct ctacaattat tactcagagg gtccttcgac cccaattatg 720 ccgcatttag ttaacaggtt acgtggatta gatgccctgg ccaagataga cgcgacgctg 780 accaaggtgg atatgaacgc ggcctacata ttcgccctga gaccgacttt tccgtattcg 840 tatgggtata aacagcgctt cagtaacagg agattaacca ctagtgcgct ttgctacgca 900 aggacgggtc tatcctcatt tctgaccgtc gacaaaacgt acacatctaa ctctccatta 960 aaagggggct ctagagggtg gcccattttc aacgtggatg tttcatcaca cgtggcggag 1020 cctcacatga ggacattgtc acctatcggt cttgaagtat tcaatctggc tacgtctcaa 1080 ttttcgaaaa ctctattaac tgcatcatcg aaagtcttca cgcaatcgct ctacactgct 1140 gacatactat cgatctttgg tgaggtgttc ctgccacacg tgatgcaacc ggtctcaaac 1200 tacactccaa tacttgtgag ggcactattg gccttgatcc acatactggg gccaggatct 1260 ggtaattgct cactttcatc gtctatcttc gagagctcaa ttccacaatt ccttacggta 1320 agtcatagta cgaacatgtc gaatagaacg aggtactgct tacatacgag gtctgcttac 1380 aaggatatgt tcaggaacgg tatcccacct cagtcgacgt tgccaccgac gctcgcgccg 1440 gaggggtcct ctgctcgggt tttaatccca gaggccctag tgaccagccc tatgtttcca 1500 tggttactta tcttagtctc gagcggccca cagttcttct tgtattcaaa ggacgctagt 1560 attaataccg tagacatcgg ttcgaggggg aggattacat caccaatccc tgacgtcgcc 1620 aagcttgatc tccacagact ctggaatctc ttccgttttg atggttaccg ctacatcgac 1680 gtggtcatag tgggcgcgga tagagattac gtgtggccct atcaaaatgg cgtgtatgta 1740 cacggcggca agggacccaa tggtactggc aactacggga acgctgacgt tcatgacgga 1800 atagggacga tattttcgtc tttcaacaac aatgttaacg tgcaaacgtc cgacctcatg 1860 ctgggcctat tgaccctgtg gaaccacata acgactacgt acgctactga ggaggaggtc 1920 accatggcga ttaagattgc agcggctttt gccctcgtct acccagtaca gcctattgtc 1980 tactccggtt gcccgaaagc ttttcagaga cacacgtcat actaccagcc ctcatcggag 2040 aactgctacg caaccgacac ggctgaagtc aagagcgtgt gggatacggt cgagcttagc 2100 gtacaggtta ataacgctat ggtactaggt atgacactac cgtttggcca acctacactt 2160 agcagtgcac aatggtataa taacatcgat aaggccgaga tctctatgtt taaggtcggc 2220 aatctaccgt tacagaacct cgattatcta tctctcgata tgatggaatt ctacgctcct 2280 acgacaggac aactgtacga catacgtagt gataacctga tcttgagcgc ccataggacg 2340 gtgaacctcg gaataggcta cacagctctg gcagatttct tcgcttatct agcttcagtt 2400 cctgcccaga gtttttacca cgacaggatg gtcacctcac cgatctcaaa gcagacgtac 2460 tccgtctatg aacgttttat tgaacgtttt attgatgact tcgtaggctg ggacagatgt 2520 gacctgttca accttgatac attgttaggt gcaaaacaca tagccggggt agcctcatct 2580 ccaatcccgt ggcactgctc gctacagaga tgcccactac ccataatcat gcattacaca 2640 ggcctcactt tcggccagga gcatataaca gtcagggacg tcgccggggt tgagggctta 2700 cagcagatcg tcatgaggga cttccagggt cgtatcgtag tagagcgctt gggcacagct 2760 gcaccatcta gaattgcagt caaattagac tggtctaggc ttagtgcctg gtactcagac 2820 acaacctgcg ccatcccttt atccgatcgt gtgatggaga tcgtcaatta cgcggcaata 2880 tgggatccta cacaggaaag acacgcacag gtttcgtgta cacatacttt agccccaatt 2940 tcctttcgag ctttaacgtg tctgagccta tattcaatac gagtatcaac cttacaccac 3000 cttatgacga cacgagccaa gctgtaattc aaaatttgtc catgccacag atgctcagct 3060 tcgatcccta ctacgagtct acgttctatg tggtctccgc ggataacgag tggataccga 3120 cttcagggcc tgcttggaag gtaccatatc tggaaaacgt agttaagcgg tctggcaggc 3180 gcttgctggc ggagctcagg atagcatcca ataacgggtc tggagaccgt accttcttga 3240 cgacgtgtaa gacaagaaag ggaaggcatt ttacctactt ctctgctgct ttggggggca 3300 agatcctgga attcgtatgc gctccactgt cgagtatcag tctccagggc gggcaaacga 3360 tctacgctcc gattcagctc caagacgtca taccagtacg taaagaggat ccagtgccag 3420 ggagcatata tgcagtcttt aagttcttct cagaaccaaa ggcctgggag gcacgtgcgc 3480 ttaagtccta caaagtcagg ttccaagatc tcccaagcca catagtgatt agtgagttga 3540 aagagagagc ggcgagaagc tatatcgggt cgaggggtta tgtcgataca ggttttaagg 3600 ctttggacat ttatatagat attctttccc aaatggagct gccaaagtac atacacgagt 3660 tcttaatttt actcagaggc aaggtgtgtg aagtctcgag gttgtacaag aaggaacagg 3720 tattcgtaat attactaacc gtattctctg agctcacagc catagtccgc catagaggta 3780 acaagtccac ggggtcgatg gggaggatgt ggactttgtt atcagacttc gagaccttgc 3840 ttgggaaggt gagctataag aacccgagta tcattgagga gcaggttgtt ccctggctaa 3900 cctcagaccc tataccacgt acccctgact tctactctac atatttcaag acggctgtcc 3960 agtttatgca caggacattc gttcccgtca ctctcagaag tgcccctccg ttaacatttc 4020 acgagtactg tgggaggccg gagctctggg gaaccacggg atccggctac atcggctatg 4080 gcaagcgtag ttttaacaaa tggtcgatct acggagctta tcctaccgag gagatttatc 4140 ggctagcact ctatggagat aatccacccc tcaagccgct ggaaaaaccc gaacttacga 4200 aggtacgtgc tgtaatctcc gcctccctcc aatcgtatat attgatgtct tacctcgagt 4260 acatcatggc agacaccata gttgacaaag cattcactac aactctgatg aacgacaggc 4320 agctagagaa ccttgagcgc cacatgatga ccatgaccgg aggagtcagg gttccagtgg 4380 accagtccaa ttttgatcgc cagcctgact tggtccaaat aggcatctgg caacagttac 4440 tgtttcacct ggcatctgcg tcagctccgt acagagcccg cgacagtgtc tcattagtca 4500 tatcacgttt agcttcaact acgactttcc caaacctaaa ggtacggatg tcggacggtg 4560 acaaacgtgt gctacacggc ctcccctcgg ggtggaagtg gaccgctctg ctaggggctc 4620 tcatcaatgt gacacaactt ttaaccatgg cggaattgtc caacactctg gcctcgttga 4680 ggtcaacggt ggtgcagggc gacgatatcg ctctaagtat gactgaccgg gagcaggcca 4740 cacagttagt tgacacttat gcacgtcagg ggttcgaggt caacccgaag aagttctgga 4800 tatcacccga ccgggacgaa ttccttcgga gggtagcaac ccctggtata gtcgcggggt 4860 acccagctag aatgatgatt aaattgttat atcagctgac ggaacctgaa gagccctcac 4920 actacatctc catgttgcca aagttagcga aggtgcctaa cgtggtccag gagcatgtaa 4980 agccccggtc tgatgtgcca tggtcggaga ccgtcgaaga acttgattgg cgcgaagctc 5040 tcgctatact gaggcatagg cctgcccgta cgtcagaact ggtgactcaa tggctgcaac 5100 tgattggtag gtttacagct gctcatccag ataagcgagc cttaactctt ctctaccgtt 5160 ggttcgtgag agatttgaca catgctacaa aaataaaaaa aagaaatctt ctggtcctgt 5220 tacagcagcc gggcttctgg gggggttatt cccagagcct ggttggcttg ttaaggacca 5280 ctcacctcgc agatatgata gttagcgaac tagacatagg actgccaggt cctcgggcca 5340 cgtctagtcg ctttgggaca tcccctacct cactggcccc gcactacctc actctgatag 5400 ttccgagtag cgtgcatgtg cagtcgcaaa aggaattgga tttgtggggg ctgtgcagat 5460 ccagtaaata tgctaagcac tattcaaaca tatttcgata ctacaaactg actcttccta 5520 cgttggtgct ttgggcccaa cggctaggtg ataaacacgt caccgatttc attagatctg 5580 tcaccctggg ttcagaaata ccaaaatatg acccgcatgc gcgtctattc acaagtaacg 5640 gggtgtcagt aggaatgtta ataaggataa gagtacgaca ttttacccac agagtgcttc 5700 gaagagagac acctaagtgt atccccgtaa tcgtcgggct atatcgggag cagacactat 5760 ccgttccgga gagtgttcgt ctatcggaac ctgacaaaat actattaagc ctacaacggg 5820 cgtcgggtta ctcactgaat ctagttaaga agatattaca gatcactagg aaaccagtgg 5880 accatccggt ggacgcgagg ttctcacagg cattccctaa caactggagc gacttggcta 5940 gaacggctgg cacctttttg ttgactgtac cggcttagga ggtttcagga gacaatgctg 6000 accttgtgcc tgagcgtttg ggcttcaacc atagcagctg gcttcacgca atttttaggt 6060 caaggaaatt tctcctttgc gtagtagcat agctgttcaa agaaagaaaa agaaatactg 6120 gtaattaccg cacacgatcg gtgggtcgac cagcataggg tggtgtgcgg ttcgagaacg 6180 gggctggcct tagtaccgtc ataacacctg gacacgtgta gaaactgtcc cccctgtaga 6240 ctccgttgcc tgtaggaggc agcgtacgag ggggtcg 6277 //