ID L10324; SV 1; linear; genomic DNA; STD; FUN; 4916 BP. XX AC L10324; XX DT 06-FEB-1993 (Rel. 34, Created) DT 14-FEB-2020 (Rel. 143, Last updated, Version 6) XX DE Schizosaccharomyces pombe Tf2 retrotransposon, protease, reverse DE transcriptase, RNAse H, integrase gene, complete cds. XX KW integrase; protease; reverse transcriptase; RNase H. XX OS Schizosaccharomyces pombe (fission yeast) OC Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; OC Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; OC Schizosaccharomyces. XX RN [1] RP 1-4916 RX DOI; 10.1016/0378-1119(93)90682-S. RX PUBMED; 8396547. RA Weaver D.C., Shpakovski G.V., Caputo E., Levin H.L., Boeke J.D.; RT "Sequence analysis of closely related retrotransposon families from fission RT yeast"; RL Gene 131(1):135-139(1993). XX RN [2] RP 1-4916 RA Boeke J.D.; RT ; RL Submitted (04-FEB-1993) to the INSDC. RL Jef D. Boeke, Mol. Biol. Genetics, Johns Hopkins University, Baltimore, MD RL 21205 XX DR MD5; 7036a95a5129241d05a6844114f46ce0. DR EuropePMC; PMC3613587; 23249883. DR EuropePMC; PMC403668; 12952871. DR StrainInfo; 586026; 0. XX FH Key Location/Qualifiers FH FT source 1..4916 FT /organism="Schizosaccharomyces pombe" FT /strain="972" FT /mol_type="genomic DNA" FT /note="contains ICTV exemplar Schizosaccharomyces pombe Tf2 FT virus" FT /db_xref="taxon:4896" FT mobile_element 1..4916 FT /mobile_element_type="transposon:retrotransposon Tf2" FT repeat_region 1..349 FT /rpt_type=LONG_TERMINAL_REPEAT FT CDS 516..4517 FT /codon_start=1 FT /product="protease, reverse transcriptase, RNAse H, FT integrase protein" FT /db_xref="GOA:P0CT36" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR024648" FT /db_xref="InterPro:IPR036397" FT /db_xref="InterPro:IPR041577" FT /db_xref="InterPro:IPR041588" FT /db_xref="UniProtKB/Swiss-Prot:P0CT36" FT /protein_id="AAA91215.1" FT /translation="MSYANYRYMKARAKRWRPENLDGIQTSDEHLINLFAKILSKHVPE FT IGKFDPNKDVESYISKLDQHFTEYPSLFPNEHTKRQYTLNHLEELEQQFAERMFSENGS FT LTWQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLFILW FT MLPYSLRKLKERNYWKSEISEIYDFLEDKRTASYGKTHKRFQPQNKNLGKESLSKKNNT FT TNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELPDFKCSIPCLIDTGAQANIITE FT ETVRAHKLPTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAI FT SFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKG FT LEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKK FT EGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDE FT HKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSES FT EHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQ FT PKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLV FT SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSD FT KEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFN FT FEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTND FT TKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGI FT ELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSM FT DFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII FT ADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW FT VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQT FT VKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL FT QKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATIDESDIGTILHILEHKN FT REQVLYLNVKYISNLNPSTIMSGWTTLATALQADKAIVNDYIKNNNLNI" FT regulatory 4557..4567 FT /note="polypurine tract" FT /regulatory_class="other" FT repeat_region 4568..4916 FT /rpt_type=LONG_TERMINAL_REPEAT XX SQ Sequence 4916 BP; 1870 A; 902 C; 763 G; 1381 T; 0 other; tgtcagcaat actacactac gctataatac actacgttga gtatcactat atgtcacatg 60 ttctaattat atatcgtacc atgtatgata cgatatggag attgatctta atgataatct 120 attaagatca atattatctg aatactataa atagagctac tgctgaacct cgttcctcag 180 ttcagttatg agctatatta gtgataggta acattataac ccagttaata caatacctat 240 actcagttgc tacttataca acctgtgtat cgtaatataa tagatcacaa ggaaaactca 300 ccgcagttct acgtatcctt aaatcagata ccaaactgcg tagcttacaa taactgaact 360 cttgtgatct acaattaact ccttttagga aaaaggaatt attgaataaa tatatatcat 420 aaatatatat atttctctcc ttctgggttc aaaggagaag gaactttgga aggactgtta 480 tcccttttga aatctcccaa agggaaacat atacaatgtc ctacgcaaat tatcgttata 540 tgaaagcaag agcaaaacga tggagaccag agaatttgga tggaattcaa acatcagacg 600 aacatttaat aaaccttttt gcaaaaatat tatcgaagca tgtaccagag atagggaaat 660 tcgatccaaa taaggatgtt gaaagttaca tttcaaaact tgatcaacac tttactgaat 720 acccttcatt attcccaaat gagcatacta aaagacagta tacattgaat cacctagaag 780 aattagagca acaattcgct gaacgcatgt tttctgagaa tggaagtctt acatggcaag 840 aattactcag acaaacaggg aaagtacaag gatccaacaa aggtgatcgt ttaactaaaa 900 catttgaagg ttttagaaat caattggaca aagttcaatt tataaggaaa ctcatgtcaa 960 aagcaaatgt tgatgatttc catactcgct tgtttatatt atggatgctg ccatattcct 1020 taaggaaatt aaaggaaaga aattactgga aatcagaaat cagtgaaatt tatgactttt 1080 tagaggacaa aagaacagcc tcgtatggta aaactcacaa gcgttttcaa ccgcaaaata 1140 aaaatctagg aaaagagtcc ctttcaaaga aaaataacac cactaatagc agaaacctga 1200 ggaagacaaa tgtttcgaga atagaatact catctaacaa attcctaaat catactagga 1260 aacgttacga aatggtatta caagctgaac ttccagactt caagtgctca ataccctgtc 1320 taatcgatac gggcgctcaa gcaaatatta taacagaaga aactgttcga gcacataaac 1380 tgcctaccag accctggtca aaaagtgtga tatatggtgg agtttatcca aataagatta 1440 atcgcaaaac aataaaactt aacataagtc taaatggaat atcaatcaaa acagaattct 1500 tggttgtaaa gaaattttcg catccagctg ctatctcctt cacaacatta tatgacaata 1560 acattgaaat atctagcagt aaacacacgc tctctcaaat gaacaaagtt tcaaatattg 1620 tcaaggaacc tgagttacca gatatctata aagaattcaa agacattact gcagaaacca 1680 atacggaaaa gctaccaaag ccaataaaag ggttagaatt tgaagttgaa ctaactcaag 1740 aaaactacag attacctatc agaaattacc cgctaccacc gggaaaaatg caagctatga 1800 atgatgaaat taatcaagga ttaaaaagtg gaattatacg agaatctaaa gccattaacg 1860 cctgtccagt aatgttcgtt ccgaaaaagg aaggcacctt gagaatggtg gttgactaca 1920 aacctttaaa taagtatgtc aaacccaata tatatccgtt accacttatt gaacaattac 1980 ttgctaaaat acaaggttct acaattttta ctaaacttga cctcaaaagt gcctatcact 2040 tgatacgagt aagaaaagga gatgaacata aacttgcttt tcgctgtcct cgtggagttt 2100 ttgaatatct agtaatgcct tatggcatat ctacagctcc agcacatttt caatacttta 2160 tcaatacaat acttggtgaa gccaaagaat cacatgtagt atgttatatg gatgatattt 2220 taattcattc aaaatcggaa tctgaacatg taaaacatgt taaagacgtt ctacagaaat 2280 tgaaaaatgc gaacttaatt atcaatcaag caaaatgtga atttcaccaa tcacaagtaa 2340 aatttatagg gtatcacatt tcggaaaaag gatttacgcc ttgtcaagaa aatatagaca 2400 aagtcttaca atggaagcaa cctaagaatc gtaaagaatt acgacaattt ctaggttctg 2460 tcaattatct taggaaattc attccaaaga catcacaatt aacacatcca ctcaataatc 2520 ttttgaaaaa ggatgtacgc tggaaatgga caccaacaca aacccaagcg atagaaaaca 2580 ttaaacaatg tttagtttct cctccggtgc tacgacactt tgatttcagt aaaaagattc 2640 tactggaaac tgatgcttca gatgtcgctg taggagccgt attgtctcaa aaacatgatg 2700 atgataaata ctatcctgtt ggatactatt cagcaaagat gtctaaagca caattaaatt 2760 atagcgtatc ggacaaagaa atgcttgcaa tcattaagtc tctcaaacat tggagacact 2820 atttagaatc cactatcgaa cctttcaaaa ttttaacaga ccatcgaaac ttaattggtc 2880 gcattactaa cgaatccgag cctgaaaaca aacgtttagc tcgttggcaa ttatttttac 2940 aagacttcaa ctttgaaatt aactacagac ctggatcagc aaatcacata gctgatgcct 3000 tatccagaat tgttgacgaa acagaaccaa ttccaaaaga ttcagaagac aatagtatca 3060 actttgttaa tcaaatctcg ataaccgatg attttaaaaa ccaagtggtt acagaatata 3120 cgaatgatac aaaattgttg aatttactaa acaatgaaga caaacgagtg gaagagaata 3180 tccaactcaa agatggctta ctaattaaca gtaaagacca aatcttatta cctaatgata 3240 ctcagctgac taggacaatt attaaaaagt atcatgaaga aggtaaattg attcatccag 3300 gcattgaact tcttacaaac attatattac gtagatttac gtggaaagga ataagaaaac 3360 aaatacaaga atatgtacag aactgccata catgtcaaat aaacaaatct aggaatcata 3420 aaccttatgg acctttacaa ccaattcccc catcagaaag accttgggaa tctttatcaa 3480 tggattttat tacagcttta ccagaatcat ctggttataa tgcacttttc gtggtagttg 3540 accgattttc aaaaatggca atcttagtac cttgtacgaa atccattaca gcagagcaaa 3600 cagctcgaat gtttgatcaa cgagttattg cttatttcgg caatccaaaa gaaatcattg 3660 cagataatga tcatattttt acttcccaaa cgtggaaaga tttcgcacat aaatataatt 3720 tcgttatgaa attttcgtta ccatacagac cacaaactga tggacaaact gagcgtacaa 3780 accaaactgt ggagaaatta ctaagatgtg tatgtagcac acatccaaat acatgggtag 3840 atcatatatc cctagtgcaa caatcttaca acaatgcgat acattcagca actcaaatga 3900 caccttttga gatagtacat cgctattcac cagctttatc acctttagag ttacctagct 3960 ttagtgacaa aactgacgaa aactctcagg aaacgatcca agtatttcaa acagttaaag 4020 aacacttgaa tacaaacaac ataaagatga aaaagtattt cgatatgaaa atacaagaaa 4080 ttgaagaatt tcaacctgga gacctagtta tggtcaaaag aacgaaaaca ggttttcttc 4140 ataaatccaa taaattagca cctagttttg caggaccgtt ctatgtgtta cagaagtcgg 4200 gtccaaacaa ctatgaattg gatcttccag attcaatcaa gcacatgttt tcatctactt 4260 ttcatgtttc tcacctagaa aagtatcgac ataattcaga actcaattac gctaccattg 4320 atgagtctga tattggaaca attcttcata tcctagaaca taaaaacaga gaacaagtac 4380 tctacttaaa tgtcaagtac atttcgaatc taaatccgag tactattatg tcaggatgga 4440 ctacattagc tacagcgcta caagcggaca aagcaattgt caatgattat attaaaaaca 4500 ataatctaaa tatctgagaa catatgactt atcctcagat ttacatagaa aatcttgggg 4560 agggcaatgt cagcaatact acactacgct ataatacact acgttgagta tcactatatg 4620 tcacatgttc taattatata tcgtaccatg tatgatacga tatggagatt gatcttaatg 4680 ataatctatt aagatcaata ttatctgaat actataaata gagctactgc tgaacctcgt 4740 tcctcagttc agttatgagc tatattagtg ataggtaaca ttataaccca gttaatacaa 4800 tacctatact cagttgctac ttatacaacc tgtgtatcgt aatataatag atcacaagga 4860 aaactcaccg cagttctacg tatccttaaa tcagatacca aactgcgtag cttaca 4916 //