ID   L09205; SV 1; linear; genomic RNA; STD; VRL; 2018 BP.
XX
AC   L09205;
XX
DT   08-JUL-1993 (Rel. 36, Created)
DT   04-MAR-2000 (Rel. 63, Last updated, Version 13)
XX
DE   Tobacco ringspot virus capsid protein gene, complete cds.
XX
KW   capsid protein.
XX
OS   Tobacco ringspot virus
OC   Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus.
XX
RN   [1]
RP   1-2018
RX   DOI; 10.1016/0168-1702(93)90100-2.
RX   PUBMED; 8109164.
RA   Buckley B., Silva S., Singh S.;
RT   "Nucleotide sequence and in vitro expression of the capsid protein gene of
RT   tobacco ringspot virus";
RL   Virus Res. 30(3):335-349(1993).
XX
DR   MD5; 7536e72a077bad0906830ccd5e965d08.
DR   EuropePMC; PMC3903276; 24449751.
XX
CC   On Sep 11, 1994 this sequence version replaced gi:310988.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2018
FT                   /organism="Tobacco ringspot virus"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12282"
FT   CDS             3..1550
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:Q88894"
FT                   /db_xref="InterPro:IPR005054"
FT                   /db_xref="InterPro:IPR005305"
FT                   /db_xref="InterPro:IPR005306"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="PDB:1A6C"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q88894"
FT                   /protein_id="AAA74963.1"
FT                   /translation="MCAVTVVPDPTCCGTLSFKVPKDAKKGKHLGTFDIRQAIMDYGGL
FT                   HSQEWCAKGIVNPTFTVRMHAPRNAFAGLSIACTFDDYKRIDLPALGNECPPSEMFELP
FT                   TKVFMLKDADVHEWQFNYGELTGHGLCNWANVATQPTLYFFVASTNQVTMAADWQCIVT
FT                   MHVDMGPVIDRFELNPTMTWPIQLGDTFAIDRYYEAKEIKLDGSTSMLSISYNFGGPVK
FT                   HSKKHAISYSRAVMSRNLGWSGTISGSVKSVSSLFCTASFVIFPWECEAPPTLRQVLWG
FT                   PHQIMHGDGQFEIAIKTRLHSAATTEEGFGRLGILPLSGPIAPDAHVGSYEFIVHINTW
FT                   RPDSQVHPPMFSSSELYNWFTLTNLKPDANTGVVNFDIPGYIHDFASKDATVTLASNPL
FT                   SWLVAATGWHYGEVDLCISWSRSKQAQAQEGSVSITTNYRDWGAYWQGQARIYDLRRTE
FT                   AEIPIFLGSYAGATPSGALGKQNYVRISIVNAKDIVALRVCLRPKSIKFWGRSATLF"
FT   polyA_site      2018
XX
SQ   Sequence 2018 BP; 453 A; 433 C; 497 G; 635 T; 0 other;
     tgatgtgtgc tgtgacagtt gttcctgatc ccacttgttg tgggacgctg tcctttaaag        60
     ttcccaaaga tgcaaagaaa ggaaagcatc ttggaacctt tgacattcgg caagccatta       120
     tggactatgg tggtttgcat tcccaagaat ggtgtgcaaa gggcattgtt aaccccactt       180
     ttacagtgag gatgcacgcc ccgcgcaatg cttttgcggg tttgtctata gcatgcacct       240
     ttgatgatta caaacgcata gacttaccag cacttgggaa cgaatgtccc ccctctgaga       300
     tgttcgaact gcctaccaag gtcttcatgc ttaaagatgc agatgtgcat gaatggcagt       360
     tcaactatgg ggagcttact ggacatggac tgtgcaactg ggcaaacgtt gccacccagc       420
     ccacgttgta cttttttgtt gcgtccacaa atcaagtaac gatggctgct gattggcagt       480
     gtattgttac catgcacgtg gacatggggc ccgtcattga tcgttttgag ttaaatccaa       540
     ctatgacgtg gcctattcaa ttgggtgata ctttcgccat tgatagatat tatgaggcga       600
     aagagattaa acttgatggg tcaacctcca tgttgtccat atcttataat tttggaggtc       660
     ccgttaagca ttctaagaaa catgccattt catattcccg ggcagttatg tctaggaatc       720
     ttgggtggtc tggcactata agcggaagtg tcaagagtgt ttcttcttta ttttgtaccg       780
     cttcttttgt catttttcca tgggagtgtg aagcacctcc aaccctacgt caggtgttat       840
     ggggcccaca tcagataatg cacggagatg gtcaatttga aattgctatc aagactcgtc       900
     ttcattcagc tgctacaact gaagaagggt ttggtagact tggcatactc ccgctctccg       960
     ggcctatagc tcctgatgca catgttgggt catacgagtt tattgtacat ataaatactt      1020
     ggcggcccga ctctcaggtg catcctccca tgttttctag ttcggagctt tataattggt      1080
     tcactttaac caatttgaaa ccagatgcga acactggcgt ggtcaatttt gatatccccg      1140
     gatacattca tgacttcgcc tctaaggacg caactgtgac gctcgcatca aaccctctct      1200
     cttggcttgt tgcagccact ggctggcact atggtgaggt ggatctctgt atctcctggt      1260
     caaggtctaa acaggcccag gcccaggagg gtagtgtttc cattaccact aactatagag      1320
     actggggtgc ttactggcaa ggtcaggccc ggatttatga tttgcggcgt actgaagcgg      1380
     aaattcccat ctttttgggt tcttatgctg gtgcgacgcc atctggtgcc ttgggtaagc      1440
     aaaactatgt ccggatttca attgttaatg ccaaggacat agttgcattg cgagtgtgct      1500
     tgcggcccaa atctataaaa ttctggggtc gctctgccac tttgttttaa aatgccttta      1560
     attaggtgtt ttgcgttttg attcttctaa ccaggattgg tagcccttct ggcatttatt      1620
     tgctgggaac catgttgtac atggttggtt agttagaagc gtcaataaac aggggtctta      1680
     attgattccc tttctaggtc ccgtccttac taggatggtc cggctcttag gtgggtcggg      1740
     aagctgtata aactcagctt cttgggggtg agagcccaag aatgtctgtc tgtcagctgc      1800
     ttgtgtaaat gagctttctc ccaggatagc tctcctgggc acaagtgaaa tgttgtgcgt      1860
     tgcatagtga agcgcacgag ttagaccgtt gtttctggta gctttgttgg gtctattgag      1920
     ttttctaaag ctactttggt atttgttgtt gtttgagccc actgttcata tttggtttgg      1980
     ggccttttat gtttcatagt gtcgtgtttg tccaacac                              2018
//