ID L07938; SV 1; linear; genomic RNA; STD; VRL; 3593 BP. XX AC L07938; XX DT 25-MAR-1993 (Rel. 35, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 7) XX DE Soil-borne wheat mosaic virus (SBWMV) complete RNA 2 segment: 84 kDa DE readthrough protein, 19 kDa capsid protein and 19 kDa cysteine-rich protein DE genes, complete cds. XX KW 19 kDa capsid protein; 19 kDa cysteine-rich protein; 84 kDa protein; KW readthrough protein. XX OS Soil-borne wheat mosaic virus OC Viruses; Riboviria; Virgaviridae; Furovirus. XX RN [1] RP 1-3593 RX DOI; 10.1006/viro.1993.1342. RX PUBMED; 8317092. RA Shirako Y., Wilson M.A.; RT "Complete nucleotide sequence and organization of the bipartite RNA genome RT of soil-borne wheat mosaic virus"; RL Virology 195(1):16-32(1993). XX DR MD5; 3f4a3a8868ca7f433f70ac87653928a7. DR RFAM; RF01080; UPD-PKib. DR RFAM; RF01104; SBWMV2_UPD-PKb. DR RFAM; RF01105; SBWMV2_UPD-PKl. DR RFAM; RF01111; SBWMV2_UPD-PKk. XX FH Key Location/Qualifiers FH FT source 1..3593 FT /organism="Soil-borne wheat mosaic virus" FT /strain="US-Nebraska, 1988 wild-type" FT /mol_type="genomic RNA" FT /db_xref="taxon:28375" FT CDS 334..2598 FT /codon_start=1 FT /transl_except=(pos:862..864,aa:OTHER) FT /product="84 kDa readthrough protein" FT /note="opal suppression" FT /db_xref="GOA:Q89250" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/Swiss-Prot:Q89250" FT /protein_id="AAA48495.1" FT /translation="MAVNKGYTGYNKELNAMAATHAYIRLSTLMSQIESWQATRASVLT FT HLGVMLNGVSKLGERSFFSRTKRFGAHTSDGDEIFCDLGGEAVTQILSRLTVALQSARG FT EGAQTRNAKRGAAPGTSQVENEEQGQTDQTLAISNAVAELMIFVRTKDFTMNECYTQDS FT FEAKYNLKWEGSSXRDGVSGKLRAQIVEEFQNRLIIADDLGIFPRRDVDGVIIRNEPEV FT VYSELEDKLLSFESSVYHPKAVTVEFEVPVATGTTTTDDEITTEDVEMVIVTEVLVDDE FT SDYYWLYFVLLLTSFLITCFILLSRRFIHFLGNRGGPGAPLCRRFATRLWSIRLWLLRK FT ATRRYGNLGVVRKTHSQTTMRKYLRDYNFQLEEWETAIGCTPREALIVADQHILVRAVQ FT RIVDSVGDVDSVDAVRKVFNGYKVRNFKIEKWLNKQTVNSALAVLNDSTVPENVVLSEG FT MLSLQTATFEEVLRCNVESQRESAYFNELIALQFAFRLVGTPEFSDFVLAYKGPAYPCY FT VEAINRHGTCIIQHHVDEDQKRKNDRAIEWLLMAGQGAFVVSSVVTTGVVVFKIHKWLK FT QRLLLRALSMLPSVGGGGNGGGGGSLPPQALELFDRAGTFEERLAALQNGLDLSPENME FT VFTPEELKTEIRHVVQAYADSSYHVADEPYLRGVGVTVVTGLPEAVGEITTTGSEVSSV FT DTSISLGVPGRARRRAVSKNTRMYPSTSGQSYNSYKSPRVSGKSGVGSMKMKIASKPMA FT S" FT CDS 334..864 FT /codon_start=1 FT /product="19 kDa capsid protein" FT /db_xref="GOA:Q06388" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/Swiss-Prot:Q06388" FT /protein_id="AAA48494.1" FT /translation="MAVNKGYTGYNKELNAMAATHAYIRLSTLMSQIESWQATRASVLT FT HLGVMLNGVSKLGERSFFSRTKRFGAHTSDGDEIFCDLGGEAVTQILSRLTVALQSARG FT EGAQTRNAKRGAAPGTSQVENEEQGQTDQTLAISNAVAELMIFVRTKDFTMNECYTQDS FT FEAKYNLKWEGSS" FT CDS 2665..3189 FT /codon_start=1 FT /product="19 kDa cysteine-rich protein" FT /db_xref="InterPro:IPR007609" FT /db_xref="InterPro:IPR016567" FT /db_xref="UniProtKB/Swiss-Prot:Q06392" FT /protein_id="AAA48496.1" FT /translation="MSTVGFHTCASCVDGPKSIKCVSKYRISVYKTLGLDVVKCRLPAD FT CGVNCGMPAAFVLEQGHPKLTMDGYCGEKHRGYVLSGAWRHAQLRSLNAELDTLEAREE FT SLRAQIKALSAGDHCPAVLAYVPKKLTKLKAEVHDVTGKKQVCITGLVDVMDSALVRLA FT PDSPPKKISSL" XX SQ Sequence 3593 BP; 910 A; 693 C; 921 G; 1069 T; 0 other; gtatttcttc ttcacatacg acaagtgtta acttgttccg tgagatttta ccattcttcc 60 ctgagtgaga attaaaataa actttggatt gctacttgga tgaaacttgg agtttcactt 120 gtctctcgtt accataggca cgctttaacg cgataaatcc taggtaatca gcggggagga 180 aactagtcgt ctctttcaag tggtatcggt gcgctggata agtttgctag actcaaagac 240 caggtggacc tgtcgctgca gaaagcagct ggtaaagtga ctgctgaatc taccggacca 300 ttattgccaa aggttactac accattgcca gttatggcgg taaataaagg ttacactggt 360 tacaacaaag agcttaacgc gatggctgcg actcacgctt acataagact cagcactttg 420 atgagtcaga ttgaaagttg gcaggctacg agggcgagtg tacttacgca cttaggtgtt 480 atgcttaatg gcgtgagtaa attaggtgaa cgaagtttct tctctaggac taaacgcttt 540 ggagcgcata cttcagacgg tgacgagatt ttctgcgatc taggaggaga agcggttacg 600 caaatccttt ctaggttgac agttgctctt caatccgcta gaggtgaagg tgctcagacg 660 agaaacgcta agaggggagc tgcacctggc actagtcaag tagagaatga agaacagggt 720 cagaccgatc agactcttgc tatttctaat gcagttgctg agttaatgat ctttgtgcgt 780 acgaaagatt ttactatgaa tgaatgctat actcaagact cttttgaggc taagtataac 840 ttgaaatggg aaggttcgag ttgacgggac ggcgtctcgg gaaagttgag ggcacaaatc 900 gttgaagaat ttcagaatcg actcataatt gctgacgatt tgggcatctt tccgagacgc 960 gatgttgatg gtgttatcat tcgtaacgaa ccagaggtag tttattcgga gctagaagat 1020 aagttactga gcttcgaaag ttctgtctat catcccaaag cggttactgt cgagtttgaa 1080 gttcctgttg ctacagggac tacgactact gatgatgaga tcactactga agatgtggag 1140 atggtaatag tcactgaggt gctcgtcgac gacgaatctg attactattg gctgtacttc 1200 gtactgctgc tcacatcttt tctcataacg tgtttcattc tcctttcgag gagattcatt 1260 catttccttg gcaaccgagg gggtcctggt gcaccattgt gtagacgctt tgctacaaga 1320 ctttggtcca ttaggttgtg gttgttaagg aaagcgacca ggcgctatgg caatttaggc 1380 gtcgtgcgaa agactcactc tcaaaccaca atgcgtaaat atttgaggga ttacaacttt 1440 caacttgaag agtgggaaac agctattggt tgtactccca gggaggcgtt gatcgttgct 1500 gatcagcaca ttctggttcg tgcggtgcag cgcattgttg attcagtcgg tgatgtcgac 1560 agtgttgatg cggtaaggaa ggtttttaac ggctacaagg tcaggaattt caaaatagag 1620 aaatggttga acaagcagac tgtgaattcc gctttggcag ttttgaacga ctcgactgtt 1680 cctgagaacg tggttttaag tgaaggcatg ttgtctttac agacagccac ttttgaggaa 1740 gtgttgcgtt gtaacgttga gtcgcagaga gagagtgctt attttaatga gcttatcgct 1800 ttgcaattcg cgtttcgact tgtaggtacg ccagagtttt cggactttgt gcttgcttac 1860 aaaggtcctg cttatccttg ttatgtcgaa gctataaacc gtcatggtac ctgtattatc 1920 cagcatcatg tcgatgaaga tcagaagcgg aagaacgaca gagcgattga gtggttgctg 1980 atggccggtc aaggcgcctt tgtcgtttct tcagtcgtga ctacgggtgt tgtagtgttt 2040 aagatacaca aatggttgaa acaacgccta ctgcttagag cattgtcaat gttgccttct 2100 gttggtggtg gaggcaatgg tggtggaggt ggttctttac cacctcaagc cctcgagctc 2160 tttgatagag ccggtacatt cgaagaacgt cttgctgctc tacagaatgg tcttgatttg 2220 agccctgaaa acatggaagt gtttactccc gaagagttga aaactgaaat acgacatgtt 2280 gttcaggctt atgctgatag ttcttatcac gttgcggacg aaccgtacct tcgtggtgtt 2340 ggtgtcactg tggtcactgg cttgccagag gctgttggag agatcactac cacgggtagt 2400 gaagtcagta gtgtggatac gtccatttct ttgggcgtac ctgggcgtgc acggaggcgc 2460 gcggtttcga aaaatacacg catgtatcct tcgacaagtg ggcaatcata taatagttat 2520 aagtcaccta gggtaagtgg taaaagtggt gttggtagta tgaagatgaa aatcgctagt 2580 aagcctatgg cgtcctaacg tgttgttttt aatactactt caccaatcac acactacttt 2640 ctgggctact tgtttatctc cattatgtct actgttggtt tccacacttg tgcgagttgc 2700 gttgatggac ctaagtctat taaatgtgtt agtaagtatc gtattagcgt gtacaagact 2760 cttggtcttg atgttgttaa gtgtcgtctt cctgcagatt gtggcgttaa ttgtggtatg 2820 cctgcggctt ttgttttaga acagggtcat cctaagctta ctatggacgg ttactgtgga 2880 gagaaacaca gaggttatgt tctatctggt gcgtggcgtc atgcccaact ccgctctctc 2940 aatgctgaat tagatacctt ggaggctaga gaagagtctc ttcgagctca gattaaagct 3000 ctcagcgctg gcgatcattg tcccgctgtt ctcgcatacg tccccaagaa actgactaag 3060 ttgaaagcgg aggttcacga tgttactgga aagaagcagg tgtgcattac gggtttagtt 3120 gatgtaatgg attctgcgtt ggtgcgtttg gcacctgact caccgccaaa gaagatatcc 3180 tctttgtgat gttctatgtt ctcgtcttgt tgttttctta ttgctagttt gtgtctactg 3240 gagtaggtaa ccaggataaa gaacccgaac gaaaatcttg caaaaatatt tattactaat 3300 ataaataaat gggcaagtct gtcactttgg ctatcagagt tatcatactc tataaactat 3360 gacgtggtct tcacgataga agatggtgct tgttatttca cctaaatcga aataacgaaa 3420 gggcgttcta cagtacgttt aaactgtagg ttccaacctc tagttcctat tgatgtaatc 3480 gaaaaaagat caatgggtaa ttatgatgag gtgcgactgg tggtcgcggc tgctatcaca 3540 cagcagctag gaggggttca attccccccc catccggagg gttatccggc cca 3593 //