ID L07937; SV 1; linear; genomic RNA; STD; VRL; 7099 BP. XX AC L07937; XX DT 25-MAR-1993 (Rel. 35, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 7) XX DE Soil-borne wheat mosaic virus (SBWMV) complete RNA 1 segment: 150 kDa DE protein, 209 kDa readthrough protein and 37 kDa protein genes, complete DE cds. XX KW 150 kDa protein; 209 kDa protein; 37 kDa protein; readthrough protein. XX OS Soil-borne wheat mosaic virus OC Viruses; Riboviria; Virgaviridae; Furovirus. XX RN [1] RP 1-7099 RX DOI; 10.1006/viro.1993.1342. RX PUBMED; 8317092. RA Shirako Y., Wilson M.A.; RT "Complete nucleotide sequence and organization of the bipartite RNA genome RT of soil-borne wheat mosaic virus"; RL Virology 195(1):16-32(1993). XX DR MD5; d99d740893063a1296edd31214918cec. DR RFAM; RF01081; SBWMV1_UPD-PKe. DR RFAM; RF01082; SBWMV1_UPD-PKh. DR RFAM; RF01106; SBWMV1_UPD-PKb. DR RFAM; RF01112; UPD-PKg. XX FH Key Location/Qualifiers FH FT source 1..7099 FT /organism="Soil-borne wheat mosaic virus" FT /strain="US-Nebraska, 1981 wild-type" FT /mol_type="genomic RNA" FT /db_xref="taxon:28375" FT CDS 102..5588 FT /codon_start=1 FT /transl_except=(pos:4062..4064,aa:OTHER) FT /product="209 kDa readthrough protein" FT /note="opal suppression" FT /db_xref="GOA:Q89249" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q89249" FT /protein_id="AAA48492.1" FT /translation="MPIDSSSILGIISEEDVIRAAISTSATKFGSQLHSTVCDHVKETY FT LDAVERQKVKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL FT LLSRIPKRSWVYDIGGNWATHVKRNDGRKVHCCCPTVDIRDSARKTVRWASIEKYLDEK FT EEIPPEIGERIKRLQADEDRIYANLKSEKAQPEDLDGKWYCGNRFEDCVFRADRAYAMA FT IHSIYDIDLSDLANALEEKRIKVMSGTFLFSVDLLLGKKSGTLPTMDGFFEVEDGYVKY FT GFHNDTNPGYKHNLNQLMKYLTKTFVVAKGGTIYYLELTEQRGDVMFFTMTDATEARMN FT GVVADESFKCIPIDNKDEVVFPIFEVDQKTDALVFSEILLSRDFVQRAIEYTGRLKPAQ FT LTSDNVNTYLTSTNNTIIIGGSSKKNATKVDATLIQQITTTLIVWTELMNQRQKRVLEK FT LRMQMKDDVDFMTLAHATFLKMFGKVSYYQRALRCFANWISYVHGADAIQFRNVPLYAE FT VTDRIKLWKNYAPNQGFVLDLEELDVKIKLHEITEREKRDVSRCIVSGKLGELSSVDNT FT ECGAVLDGKDYKDSRRKTTFEDLLDGEVATNFLDNWCDKTDHFNFSRSDAVSKYAWGMK FT LLKGVWEFLLPPLHFAPVYVDAEQARIRLNAEIVTVVEHAVTESNVGLTGVEKAEFADA FT MSFLVGAAKHLEKRKEVAQQAVVEAVEAVRELRKVHSPADVCNAVDLWSAFEKDLDDDD FT ETGTTATIVEKGKAVCDDDVQVVLCGSSSTSSVEEVSKEAELFVETIESQASSVTETSD FT VTTEVAASSSDESVMSEVPEKSWASVAEDESDDSYYLRSMIISDKVQKSALPKRPDFSK FT YSTLQQKAKQEALWYLQCKIVSDRTTLRSIIDDHLRGMFHNGNCELPKDSAFLDYTVDN FT CGTWMYGKPSRPGHSYGVGFSLDTKQRITKCELVKLMWNRDCRGQMNQKPVNTRAFQYL FT LLSDLSFMMNELVIYRNLQQVVKKKERTKQARITLRDGVPGCGKSTWILNNANPMKDMV FT LCVGKEATEDLKEKFMKKHKCAESDLKRIRTVDSFLMHDYDKFRAATVHFDEALMAHAG FT IVYFCADILGAKKVICQGDSQQIPFINRVESITLQYAKLAIDETEYVRLTYRSPVDVAH FT YLTKKSWYSGGRVTTKNSVLRSMKVVGPRDAKPMTSVHCVPYHRDAQYLTFTQSEKADL FT YKALRAKGPVEVNTVHETQGKTFDDVIVVRLKTTENEIYPGGRKGQPYEIVATTRHRRS FT LVYYTAIEDRLFEDISDMQDVMESKLMKNLCSELTKXRFGSKYESILICDREVRVPDVG FT TPVIIQDFYDRVLPGNSTMDSHFDGYEVSTSDISIELENCTVQPNKNVKVWQDKRGLVP FT VLRTAMPPKRQNLPVEAMLALKKRNMAAPKLQEAVNEFEVIERTVNRAKEIFFDTSLID FT DSEVSTRESNLRWWKRQSTTAKAQLKKETRLLHELDLCYYNYCIKGDEKPKMDRSPQHE FT YGALQTVVFPDKIVNALFGPAMKEINERIRLALKPHVVYNSRMNAEELNRTVEFLDPEE FT DFNAFEIDFSKFDKSKTSLHIRAVIELYKLFGLNDLFALLWEKSQCQTKIRDFVNGITA FT YLLYQQKSGNCDTYGSNTWSAALALLESMPLEKAKFMIFGGDDSLILFPKHLTIEDPCR FT RLASLWNFDCKLFDFKHNMFCGKFLLKVGDRFKFAPDPMKLITKLGRKDIVDGRLLSEI FT FVSVGDNYRSYRDYRILEQLTYALRERYRTTEDPTAALVALKKYIFDFKLWASMFNYKG FT EFVECRVDRNFEW" FT CDS 102..4064 FT /codon_start=1 FT /product="150 kDa protein" FT /db_xref="GOA:Q89249" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q89249" FT /protein_id="AAA48491.1" FT /translation="MPIDSSSILGIISEEDVIRAAISTSATKFGSQLHSTVCDHVKETY FT LDAVERQKVKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL FT LLSRIPKRSWVYDIGGNWATHVKRNDGRKVHCCCPTVDIRDSARKTVRWASIEKYLDEK FT EEIPPEIGERIKRLQADEDRIYANLKSEKAQPEDLDGKWYCGNRFEDCVFRADRAYAMA FT IHSIYDIDLSDLANALEEKRIKVMSGTFLFSVDLLLGKKSGTLPTMDGFFEVEDGYVKY FT GFHNDTNPGYKHNLNQLMKYLTKTFVVAKGGTIYYLELTEQRGDVMFFTMTDATEARMN FT GVVADESFKCIPIDNKDEVVFPIFEVDQKTDALVFSEILLSRDFVQRAIEYTGRLKPAQ FT LTSDNVNTYLTSTNNTIIIGGSSKKNATKVDATLIQQITTTLIVWTELMNQRQKRVLEK FT LRMQMKDDVDFMTLAHATFLKMFGKVSYYQRALRCFANWISYVHGADAIQFRNVPLYAE FT VTDRIKLWKNYAPNQGFVLDLEELDVKIKLHEITEREKRDVSRCIVSGKLGELSSVDNT FT ECGAVLDGKDYKDSRRKTTFEDLLDGEVATNFLDNWCDKTDHFNFSRSDAVSKYAWGMK FT LLKGVWEFLLPPLHFAPVYVDAEQARIRLNAEIVTVVEHAVTESNVGLTGVEKAEFADA FT MSFLVGAAKHLEKRKEVAQQAVVEAVEAVRELRKVHSPADVCNAVDLWSAFEKDLDDDD FT ETGTTATIVEKGKAVCDDDVQVVLCGSSSTSSVEEVSKEAELFVETIESQASSVTETSD FT VTTEVAASSSDESVMSEVPEKSWASVAEDESDDSYYLRSMIISDKVQKSALPKRPDFSK FT YSTLQQKAKQEALWYLQCKIVSDRTTLRSIIDDHLRGMFHNGNCELPKDSAFLDYTVDN FT CGTWMYGKPSRPGHSYGVGFSLDTKQRITKCELVKLMWNRDCRGQMNQKPVNTRAFQYL FT LLSDLSFMMNELVIYRNLQQVVKKKERTKQARITLRDGVPGCGKSTWILNNANPMKDMV FT LCVGKEATEDLKEKFMKKHKCAESDLKRIRTVDSFLMHDYDKFRAATVHFDEALMAHAG FT IVYFCADILGAKKVICQGDSQQIPFINRVESITLQYAKLAIDETEYVRLTYRSPVDVAH FT YLTKKSWYSGGRVTTKNSVLRSMKVVGPRDAKPMTSVHCVPYHRDAQYLTFTQSEKADL FT YKALRAKGPVEVNTVHETQGKTFDDVIVVRLKTTENEIYPGGRKGQPYEIVATTRHRRS FT LVYYTAIEDRLFEDISDMQDVMESKLMKNLCSELTK" FT CDS 5653..6636 FT /codon_start=1 FT /product="37 kDa protein" FT /db_xref="GOA:Q06360" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/Swiss-Prot:Q06360" FT /protein_id="AAA48493.1" FT /translation="MGSQDVKGDSYESVYNKILDMQSEPGGANDLRTNRQRSFNIENRY FT VEKALTQPGVVTKMQDAWTNWTKTNKEEGTPYNMSYSCVLLNVIPTVPMGYAGTVEVSL FT LDSGLSPLENVIPDQTQMMELGKGPHVMCFFMHYSIPLNDKGRAVKLAFKIDAEMASKG FT MSVMNVYSYWTQRQGHLSAYSEPQRSTISKLMLGYDKSLKMKTRNDVRRFVGRSLSLHN FT QEQSVPALLPGQINVMKENVPLYRKESVIDLTREEREKAAQLEMLRKTREVHTQRSAEE FT MKRRQAELAKDTQRKLAEEAKAVTEKRKNMAGVNSSNIKFGNFDSV" XX SQ Sequence 7099 BP; 2032 A; 1219 C; 1837 G; 2011 T; 0 other; gtatttcttt cctcttacgt cgttagacaa agtaaggtgt ttggagtact tgtggtaata 60 caaaggcacg cttcggcgat aaatcctttg tcttcaccac tatgccgatc gacagcagtt 120 caattctggg gatcataagc gaggaggacg tgatcagggc agctatcagt actagtgcga 180 ctaaatttgg ttctcagttg cacagtactg tttgtgatca tgtgaaggag acttatttgg 240 atgcggttga aagacaaaaa gtaaaaaaga aaatagatgt gcgaagagat ctttcgcagg 300 agcaattaca attgttgaac gatttgtatc ctgagagaca catcgtttcc agcaactgtg 360 aacgtggcac acatagtttt gccgcagctt cgagaaagat tgaaacggat ttgttgctga 420 gcaggattcc aaaaaggtca tgggtatatg atattggtgg caactgggca actcatgtta 480 agcgcaatga tggaaggaaa gtgcattgtt gctgtcccac cgttgacata agggactcgg 540 ccaggaagac tgtgagatgg gcatctattg aaaaatattt agatgagaaa gaagagattc 600 cacctgagat aggagagcgt ataaaacgtt tgcaggccga cgaagacagg atatacgcta 660 acttgaaatc agaaaaagca caacctgaag atcttgatgg aaagtggtat tgtggtaaca 720 ggttcgagga ctgcgttttt cgcgcggaca gagcttatgc gatggctatc cacagcatat 780 atgacatcga tttgtctgat cttgccaacg cgttggagga gaagcggatc aaggttatga 840 gtggtacgtt cttattctca gtggatttgc tgttgggaaa aaagagcggt actttgccga 900 cgatggacgg tttctttgaa gttgaagatg ggtacgtgaa gtatggtttc cataacgata 960 cgaatccagg atataagcac aatcttaatc aactcatgaa atatcttacc aagactttcg 1020 tcgttgctaa aggtggtacc atttactact tggagcttac agagcagagg ggcgacgtga 1080 tgttctttac tatgacagac gctactgagg cacgtatgaa cggtgttgtg gcagacgaat 1140 ctttcaaatg cattccgatt gataacaaag atgaagttgt gttcccaatt ttcgaagtag 1200 atcagaagac ggacgctttg gtgttttctg agatattact gtcgcgtgat tttgtccaaa 1260 gggcgataga gtacacaggc agattgaaac cggcgcagct tacctctgac aacgtgaata 1320 cgtatcttac atccacaaat aacacgatta ttattggagg ttcttctaag aagaacgcca 1380 ctaaagtgga tgcgacgctt attcagcaga tcactactac tttgatagtg tggacggagt 1440 tgatgaatca gcgtcagaag agggttttgg agaaactgag gatgcaaatg aaagatgatg 1500 tcgatttcat gacattagct cacgctacgt tcttgaaaat gttcggtaaa gtgagttact 1560 atcagagggc cctgaggtgt tttgctaatt ggatatcata tgtgcatggt gccgatgcta 1620 ttcagttcag gaacgttcca ctttatgcgg aagtgactga ccggattaag ctttggaaaa 1680 attatgcacc aaatcagggt tttgttctcg atttggagga gctggatgtt aagatcaaac 1740 tgcatgagat tactgagaga gagaagcgcg atgttagcag gtgtattgtt tctggaaagt 1800 tgggtgagct ttcttccgtc gataacaccg aatgcggtgc tgttttggat gggaaggact 1860 acaaggatag cagaagaaaa accacttttg aagacttact ggacggtgag gtcgcgacca 1920 attttctgga taattggtgt gacaaaaccg atcatttcaa tttctcgcgt agcgacgctg 1980 tttctaagta tgcttggggt atgaagttac tgaagggtgt gtgggagttt ctactgccac 2040 cactacactt cgcgcccgtt tatgttgatg cggaacaagc tagaatcaga ctgaacgcag 2100 aaattgtgac cgtggtcgaa cacgctgtta ctgaaagcaa cgtgggtctc accggagttg 2160 aaaaagctga gtttgcggat gctatgtctt ttttggtcgg tgcggccaaa catttggaaa 2220 agaggaaaga ggttgcacaa caagctgttg tggaggctgt cgaagccgtg cgtgaacttc 2280 ggaaagttca ctcacctgct gacgtgtgca atgcggttga tctttggtcg gcttttgaga 2340 aggaccttga tgatgatgat gaaactggca caactgcgac gattgttgag aagggcaaag 2400 ccgtgtgcga tgatgacgtt caagtagtgc tgtgtgggag ttcctctact tcttctgtgg 2460 aagaagttag taaggaagca gaactgttcg ttgagaccat tgaaagccag gcaagttctg 2520 tgactgagac gagtgatgtt acaactgaag tcgctgcatc gagtagtgac gagtcagtta 2580 tgagtgaggt tcctgagaag tcatgggcgt cagttgctga ggacgaaagc gacgatagtt 2640 actatttgag gtccatgatc atttcagaca aggtacaaaa gagtgcttta ccaaaaagac 2700 ctgatttttc aaaatacagt actcttcaac agaaggcgaa acaggaagct ttgtggtact 2760 tgcaatgcaa gatcgtttct gacaggacta cattgaggag cataattgac gatcatttgc 2820 gcggcatgtt tcacaatggt aattgcgagt tgcctaagga ttcagctttt ttggactaca 2880 ctgttgataa ttgtggtacc tggatgtatg ggaagccgtc gcgtccgggt cacagttatg 2940 gtgttggttt ttcactggat actaagcaac gcattactaa atgtgaactc gtgaaattga 3000 tgtggaatcg ggattgcagg ggtcaaatga accagaagcc tgttaacaca agggcttttc 3060 aatatttgct actgagtgat ttgagtttca tgatgaatga gttggtcatt tatcgtaatt 3120 tgcaacaggt agtgaagaag aaagaaagga ccaagcaagc tcgtattaca ttgagggatg 3180 gtgttcccgg ctgtggaaaa tctacttgga ttttgaacaa cgcaaatcct atgaaggata 3240 tggtgctatg cgttggtaaa gaagccactg aagatctgaa ggagaagttc atgaagaagc 3300 acaaatgtgc agagtcagat ttgaaaagga tcaggactgt tgactctttc ttgatgcatg 3360 actatgacaa attccgtgct gctaccgtac attttgacga agcgttgatg gcacacgcag 3420 gaattgtgta cttctgtgct gacattcttg gggcgaagaa agtgatttgc caaggagatt 3480 cacaacaaat acctttcata aatcgtgttg agtcaattac tttgcagtat gcgaaacttg 3540 cgattgatga gacggaatat gtgagactta catacaggtc gccagttgac gtggcacatt 3600 atcttaccaa gaagtcttgg tacagtggcg gtagggttac aacaaagaat agtgtgttga 3660 gatcaatgaa ggtcgtaggt ccgcgtgacg caaaacctat gacgtcggtg cattgcgttc 3720 cttaccatag ggacgcacag tacttgacgt ttacacaatc tgagaaagcc gatctgtaca 3780 aagcgttgcg tgcgaaagga cctgtggagg tgaacactgt gcatgagaca caaggaaaaa 3840 cttttgacga cgttatcgtt gttagactga agaccactga gaatgaaatt tatccgggtg 3900 gaaggaaggg acaaccttac gagattgtgg caaccaccag gcacaggagg tctttggttt 3960 actacactgc tattgaggac aggttattcg aagatatcag cgacatgcag gatgtcatgg 4020 agagtaaatt gatgaagaac ctctgttctg agcttactaa atgacggttt gggtcgaagt 4080 atgagtctat tttgatatgt gatagagagg taagggtacc tgacgtagga acccctgtga 4140 ttatacagga tttctatgac agggtattac ctggaaattc cacaatggat tcacacttcg 4200 acgggtacga agtttctact tccgacatta gcatagagct cgaaaattgc actgtccaac 4260 ccaacaaaaa tgttaaggta tggcaagaca agaggggttt ggtgcctgtt ttgagaactg 4320 cgatgcctcc taaaaggcag aatctgcctg tagaagctat gttagctttg aagaagcgga 4380 acatggcagc gcccaagttg caagaggcag tcaatgaatt tgaggtgatt gagcgaacag 4440 tcaatagagc taaagagatt ttctttgaca cttctctgat tgatgattct gaggtttcta 4500 ctagggaatc taatttgaga tggtggaaga ggcaatcgac tacagcgaaa gctcaactga 4560 aaaaagaaac aaggctgctg catgagttgg atttgtgcta ctacaattat tgcattaagg 4620 gtgatgagaa accaaagatg gacagatctc cgcaacacga gtacggtgct ttgcaaactg 4680 tggtatttcc cgataagatt gtcaatgcgc tttttggtcc tgctatgaag gagatcaatg 4740 aacggatacg tttggctttg aaaccacatg ttgtgtataa ctccagaatg aatgctgaag 4800 agttaaatcg tacggtggag tttttggatc cagaagaaga tttcaatgct tttgaaattg 4860 atttttcgaa attcgacaag tcaaaaactt cactgcatat tagggctgtg attgagcttt 4920 acaagttatt tggtttgaac gacttgttcg cccttttgtg ggaaaaatcg caatgccaga 4980 cgaaaatcag agactttgtc aatggcataa cggcttattt gttgtatcag cagaaatcag 5040 gcaattgtga cacttatggt tctaacacct ggtctgctgc tttggctttg ctggaatcca 5100 tgcctttgga gaaggctaaa ttcatgattt ttggtggtga tgattcactg atacttttcc 5160 cgaaacattt gacaattgaa gatccatgta gacgtctggc gtctttgtgg aatttcgact 5220 gcaaactttt cgatttcaaa cataatatgt tttgtggaaa gtttctgctg aaagtgggtg 5280 atagattcaa gttcgcacct gatcctatga agttgattac gaaattaggt cgcaaggaca 5340 ttgttgacgg acgattgttg tcggaaatct ttgtttccgt tggtgacaac taccgttctt 5400 atcgcgacta tcgtattttg gagcagttga cttatgctct tcgtgagagg tacaggacca 5460 ctgaagatcc gactgctgca ttggtggctt tgaagaagta tatcttcgat tttaagctat 5520 gggctagtat gtttaattat aagggtgagt ttgttgagtg tagggtggat aggaactttg 5580 aatggtaatt cgccgttcct agttgttttt tatactacat ctttacttct tttccttgta 5640 atttgtgcag acatgggctc acaggatgtc aaaggtgatt cttatgagag tgtttacaac 5700 aagattttgg atatgcagtc tgaacccggg ggtgcaaatg atttgcggac taatcgtcag 5760 aggagtttta atattgaaaa tcgttatgtg gaaaaagcgc taacacaacc gggtgttgtt 5820 actaaaatgc aggacgcgtg gaccaattgg actaagacta ataaggagga aggtactcct 5880 tacaatatgt cttacagctg tgtgttgctg aatgttatcc ctactgtacc gatgggctat 5940 gctggtactg tagaggtctc attactggat tcgggcctgt caccacttga aaatgttatt 6000 ccggatcaga cacaaatgat ggagctggga aaaggtccgc atgtgatgtg tttcttcatg 6060 cattacagta ttccgttaaa tgataagggc agggctgtga agctagcttt taaaattgat 6120 gcggaaatgg catccaaagg tatgagtgtt atgaatgtct attcctactg gacgcaaagg 6180 caaggtcact tatctgcata ttctgaaccc caaaggtcta caatttctaa attgatgttg 6240 ggttatgata aaagtctgaa gatgaaaact aggaatgatg tcaggaggtt cgttgggagg 6300 tctctctcct tacacaatca ggaacagtcg gttccggctt tactacctgg gcagattaac 6360 gttatgaaag agaacgtgcc actgtaccgt aaggaaagtg tcatcgatct tactcgggaa 6420 gaaagggaaa aagctgcaca gttagaaatg cttagaaaga cgcgggaagt tcatactcaa 6480 aggagtgctg aggaaatgaa aaggcgtcaa gcagaactcg cgaaggatac ccaacgtaag 6540 ttggctgagg aagcaaaggc tgtcacagag aagcgtaaga acatggctgg tgtaaattct 6600 agtaatatta agtttggtaa ttttgatagt gtgtagctat gtacagttat ctgtttacgt 6660 gtaactatat attcctttcg gtctctataa catgttctgt gtgttatata tacgtatatt 6720 ggtgtatatg tattttattt tcacattttg tatttgtgtg taaatgcaaa atagtctaat 6780 ttgtcgggct gagacaaatc gtggtcagta cgataactga taccgcctga ttagcggtct 6840 acaagttaat cgaacctatt tgctcgggtt gagtgcaaac gcggtcattg cgataaatga 6900 ctctgttgat caaacagaaa taaattgatt acgctgtaca gtgcgttaaa ctgtacatct 6960 atcctttagc tggtgttgat gtaattgaaa aaagatcaac atttagcgat gatgaggagc 7020 gacaggtagt cgcggctgct atgacacagc agttaagagg ggttcaaatc ccccccgaac 7080 cggagggtta tccggccca 7099 //