ID L07884; SV 1; linear; genomic RNA; STD; VRL; 3876 BP. XX AC L07884; XX DT 07-JAN-1994 (Rel. 38, Created) DT 04-APR-2006 (Rel. 87, Last updated, Version 4) XX DE Sweet clover necrotic mosaic virus unidentified genes, three complete cds's DE including fusion protein. XX KW fusion protein. XX OS Sweet clover necrotic mosaic virus OC Viruses; Riboviria; Tombusviridae; Regressovirinae; Dianthovirus. XX RN [1] RP 1-3876 RX DOI; 10.1016/0168-1702(93)90130-F. RX PUBMED; 8317142. RA Ge Z., Hiruki C., Roy K.L.; RT "Nucleotide sequence of sweet clover necrotic mosaic dianthovirus RNA-1"; RL Virus Res. 28(2):113-124(1993). XX DR MD5; a0da0fef093a9b8b80a0da9484752026. DR EuropePMC; PMC112128; 10864632. DR RFAM; RF01453; RCNMV_TE_DR1. DR RFAM; RF01454; RCNMV_5UTR. XX FH Key Location/Qualifiers FH FT source 1..3876 FT /organism="Sweet clover necrotic mosaic virus" FT /strain="59" FT /mol_type="genomic RNA" FT /db_xref="taxon:28348" FT mRNA 121..2423 FT /product="fusion protein" FT CDS 121..831 FT /codon_start=1 FT /product="ORF1" FT /db_xref="UniProtKB/TrEMBL:Q87028" FT /protein_id="AAA47455.1" FT /translation="MGFISFSLFDVDKLLVWVSKFNPGKILSSICNLGVDCWNRFRKWF FT FGLNFDAHMWAVDAFMLLMPFYTEQMERVVDDFCSETQESKLEDCLELDPSVNEFFDEE FT VYKRDEEGVMVLQRTSSRKHIKRVRAGMMQAAIKAVEKRITNRHTIFGDDMGKVDEAAV FT RATASDICGEFKINEHHTNVLVYAAAYLAMTPDQRSIDSVKLAYNPKSQARRTLVTAVR FT ENKAVAGFKSLEDF" FT CDS 924..2423 FT /codon_start=1 FT /product="ORF2" FT /db_xref="GOA:Q87029" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q87029" FT /protein_id="AAA47456.1" FT /translation="MKSKRVVGLPAVSAGLKVCVHQTSLHNMIVSLERRVFRVKNAAGE FT LVVPPKPIQNAFDSISYFRDAWLRKLSHKGQVLKSSIADVVACYSSEKRKLYQKAADSL FT EKKPVQWRDSKVQAFIKVEKLECDTKDPVPRTIQPRSKRYNLVIGQYLRLNEKKMLDAI FT DDVFGEKTVLSGLDNRAQGRAIAHKWRKYQNPIGIGLDASRFDQHCSVDALKFEHTFYK FT ECFPGDQQLEQLLKWQLTNTGSALLPTGELVRYRTKVGRMSGDINTGLGNKILMCSMVH FT AFLKETGVRASLANNGDDCVLFCEKGDYEQINRNLEQWFLCRGFEMTVEKPVDVLEKVV FT FCRSQPVCIATQWAMVRQLGSLSRDCFSTQDWLNPKTFKDAMNALGQCNGIINDGVPIH FT MAQAKLMHKSAETGSSIWRSLHKQMEYRWRDRLGKRTNLLWSEVEDATRLSYFRAFSIE FT PYVQRIVEEYLSQVEVTCEGRETNVLPTHYSRIHKDLIKSR" FT CDS 2424..3440 FT /codon_start=1 FT /product="ORF3" FT /db_xref="GOA:Q87030" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q87030" FT /protein_id="AAA47457.1" FT /translation="MSTKAPKKSKQRSKPRNRNPSTSVKTVTIPFAKTQIVKTVNPPPK FT PTKAALHTQLVLSVVGSIALRANNGKASQRFRLNPSNPALFPTIAYEAANYDMYRMKKL FT TLRYVPLVTVQNSGRVAMIWDPDSQDSVPQSRQEISAYSRSISTAVYEKCSLTIPADNQ FT WRFVADSNVVDRKLVDYGQLLFVNHSGSEGIETGDVFLECEVEFKGPQPTATVVQRGII FT DRGGVLTGEGPSYLLPTDIVITATGISMNLDVAGTYLVTLVVTSSGSGNLQVLGNSTLV FT GDFRTAYSGINFIATFVLTSTGVPSPTSSILFNESTGVTRAQFSIVRSKPSNAYVFG" XX SQ Sequence 3876 BP; 1065 A; 888 C; 1000 G; 923 T; 0 other; taaacgtttc accggtttgt aaattggaac ttcgtagttc gccagacgcc ttcttcgtat 60 caaggaactg gaaattgtac ggtgagtctg tcattttatt ttctactttt cgtaccagtc 120 atgggtttta ttagtttttc gctttttgat gtggataaat tgttggtatg ggtgagcaaa 180 tttaacccag gtaagatact gtcttccata tgcaacttgg gtgtggactg ttggaaccgc 240 ttccgtaagt ggttctttgg cctcaacttc gatgcgcata tgtgggccgt ggatgctttt 300 atgctgctca tgccatttta cacggagcag atggaacgtg tagtcgacga cttctgcagc 360 gaaacccaag aatccaaatt agaagactgt ttggaattgg acccctccgt taacgagttc 420 ttcgatgagg aggtgtacaa gagagatgag gagggcgtga tggttctcca aaggacgagc 480 agccgtaagc acatcaaacg tgtgcgcgct gggatgatgc aagcggcaat taaggccgta 540 gagaagagaa tcacaaatcg tcacaccatc tttggtgatg acatgggtaa ggtggatgaa 600 gctgctgtta gggccaccgc tagcgatatt tgcggtgagt tcaaaatcaa cgaacaccac 660 accaacgtgt tggtgtatgc cgcagcatac cttgccatga caccagacca acggtcgatt 720 gacagtgtca agctcgccta caatccaaag agtcaagcca ggcgaacttt ggtcacagcc 780 gttcgtgaga acaaggctgt tgccgggttc aaatcccttg aggattttta ggcggtccac 840 tcagctttcc ggtcgaagat gccccatacc ctatcctagg catcccggaa atcagggtag 900 ctgagaagcg ggccagtaga gtcatgaaaa gtaagagagt cgtagggtta cctgctgtta 960 gtgcgggtct taaggtttgc gtccatcaaa cctccctaca taatatgata gttagtctcg 1020 aacgtagggt cttccgagtg aagaacgctg cgggagagtt agtagtacct cccaaaccaa 1080 tccaaaatgc atttgactct atttcctatt tccgcgatgc gtggttaagg aaactgtctc 1140 acaagggtca agtgctaaaa tcctccatag ctgacgtcgt cgcatgctac tcctctgaaa 1200 agaggaaact atatcaaaag gcggctgact ctttggagaa gaaacccgta caatggaggg 1260 attccaaggt gcaagcattc atcaaagtag aaaaacttga atgtgacact aaagatcccg 1320 tgcctcgcac gattcagcct cggtccaaaa ggtacaacct agtgatagga caatacctca 1380 gactgaatga gaagaagatg ctggacgcca tagacgacgt ctttggagag aagacagttc 1440 tgtcgggttt ggataacagg gcccaaggga gggccatcgc ccacaagtgg cgtaaatacc 1500 agaaccccat cgggatcggc ttagatgcat cgagattcga tcagcattgt agcgtggatg 1560 ccctcaaatt cgagcacacc ttctacaagg agtgttttcc tggggatcaa cagttggagc 1620 aattattgaa atggcagtta accaatacag ggtctgcatt attgccaact ggagaactgg 1680 tcagataccg caccaaagtg ggtcgcatga gcggcgacat aaacacaggc cttgggaaca 1740 agattctcat gtgcagcatg gtgcacgcat tcctgaagga gacgggtgtg cgggcttcgt 1800 tagccaataa cggcgacgac tgtgtccttt tctgtgagaa gggagattat gagcagataa 1860 accgcaatct tgagcaatgg ttcctgtgca ggggtttcga aatgaccgtc gagaaacctg 1920 tcgatgtact cgagaaggtg gtgttctgtc gtagtcaacc ggtttgcatt gccacgcaat 1980 gggctatggt aaggcaattg gggagtttgt caagagactg cttctcaacg caggattggt 2040 tgaacccaaa gacatttaaa gatgcaatga acgcgcttgg acaatgcaat ggaatcatca 2100 atgatggtgt gcccatacac atggctcagg ctaaattgat gcataaatcg gcggaaaccg 2160 gaagttcaat ctggaggtca ctccacaagc aaatggagta ccgctggaga gatcgtctcg 2220 gtaaaagaac aaatctattg tggagtgagg ttgaggatgc cacgagactg tcatacttta 2280 gagcattcag tatagaacct tacgtacaga ggatagtgga ggagtacctc tctcaagtcg 2340 aagtaacttg tgaggggcga gaaacaaacg tattacctac acactattct agaatccaca 2400 aagatctaat caaatcccga taaatgtcta caaaagctcc caagaaatcc aaacaacggt 2460 ccaagcccag gaaccggaac ccaagtacta gtgtcaagac ggtgaccata cctttcgcga 2520 agacgcaaat cgtaaagacc gtgaaccctc cacccaagcc aacaaaggct gcgttacaca 2580 cccagttggt gttgagtgta gtaggttcca ttgcgttgcg cgccaataat ggcaaggcca 2640 gtcaaaggtt taggttaaac ccgagtaacc cggcactatt tcccaccata gcatacgaag 2700 ccgcaaatta tgacatgtac cgaatgaaga aactgacact ccgctacgtc cccctcgtaa 2760 ccgtgcaaaa ttccgggcga gtggcaatga tatgggatcc cgactctcaa gactcggttc 2820 cccagtcgcg acaggagata tcagcctatt ctcggtcaat ctcgactgcc gtgtacgaga 2880 aatgctcgtt gacgattccg gcggataatc aatggcgctt cgttgcagac agcaatgttg 2940 ttgacaggaa actggtcgat tacggccaat tgttgttcgt caaccattct gggagtgagg 3000 gaatagaaac cggagatgtg ttcctcgaat gtgaagtcga gtttaagggc ccccagccta 3060 ccgccacagt ggtccagaga gggatcatag atcgcggagg ggtgctcacc ggcgaaggac 3120 catcttactt gctacctact gacattgtca tcaccgcgac ggggatatca atgaacctgg 3180 atgtcgctgg aacttatctc gtcaccttgg tagtgacttc ttctggcagt ggcaacctcc 3240 aagtgttggg gaattcaacc ttggtcggtg actttagaac ggcgtatagt gggattaact 3300 ttatagctac gtttgtgctc accagcactg gcgttccatc acccacatct agtatactgt 3360 tcaatgagtc aaccggggtc acccgcgcac agttcagcat cgtgagatcg aagccgtcga 3420 acgcctatgt atttggttaa tgcaagcgta acctccatcc gagttgcaag agagggaaac 3480 gcagtctcgc cgaccctgtt gccaaacagt aaaattggaa aaaatagagt gttaggagta 3540 gttcccgtac ccgcgggaca agaacctatt gtagtagacg aaccggtctc ggaccctggt 3600 aaacaggtac ctagcgtaat agaaggtcgc tagaaatcgg gtgggcttca cctacgggta 3660 acccaccgtc gagagggaaa acctctgtgt ggttgtgcgc acgtcgtttc ctgaagaatc 3720 tcactgcagt agttatttcc ttttcctttt aggctagaag cacttgctac ggagggcgca 3780 taccttcggt taaacaaaat tggcccctga gagtagaaaa ctcaggttaa taaaacagga 3840 gattatttgc ttagtcgtat aacggctaag cacccc 3876 //