ID KF209276; SV 1; circular; viral cRNA; STD; VRL; 5860 BP. XX AC KF209276; XX DT 18-JUN-2013 (Rel. 117, Created) DT 05-AUG-2013 (Rel. 117, Last updated, Version 3) XX DE Citrus leprosis virus nuclear type isolate M2345 segment RNA2, complete DE sequence. XX KW . XX OS Citrus leprosis virus nuclear type OC Viruses; Riboviria; Negarnaviricota; Haploviricotina; Monjiviricetes; OC Mononegavirales; Rhabdoviridae; Dichorhavirus. XX RN [1] RC Publication Status: Online-Only RP 1-5860 RX PUBMED; 23887919. RA Roy A., Stone A., Otero-Colina G., Wei G., Choudhary N., Achor D., Shao J., RA Levy L., Nakhla M.K., Hollingsworth C.R., Hartung J.S., Schneider W.L., RA Brlansky R.H.; RT "Genome assembly of citrus leprosis virus nuclear type reveals a close RT association with orchid fleck virus"; RL Genome Announc 1(4):0(2013). XX RN [2] RP 1-5860 RA Roy A., Stone A., Otero-Colina G., Wei G., Choudhary N., Achor D., Shao J., RA Levy L., Nakhla M.K., Holingsworth C.R., Hartung J.S., Schneider W.L., RA Brlansky R.H.; RT ; RL Submitted (10-JUN-2013) to the INSDC. RL Citrus Research and Education Center, University of Florida, 700 Experiment RL Station Road, Lake Alfred, FL 33850, USA XX DR MD5; f4f887e0d6089e87d3271fd1e96190e2. DR EuropePMC; PMC3735072; 23887919. XX CC ##Assembly-Data-START## CC Assembly Method :: Velvet v. 1.2.07 CC Sequencing Technology :: Illumina; Sanger CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5860 FT /organism="Citrus leprosis virus nuclear type" FT /segment="RNA2" FT /host="Citrus reticulata" FT /isolate="M2345" FT /mol_type="viral cRNA" FT /country="Mexico" FT /isolation_source="leaf" FT /collected_by="Gabriel Otero-Colina" FT /collection_date="15-Dec-2012" FT /db_xref="taxon:1344952" FT 5'UTR 1..182 FT CDS 183..5816 FT /codon_start=1 FT /product="polymerase" FT /db_xref="GOA:R9W2W2" FT /db_xref="InterPro:IPR014023" FT /db_xref="InterPro:IPR026890" FT /db_xref="InterPro:IPR039736" FT /db_xref="UniProtKB/TrEMBL:R9W2W2" FT /protein_id="AGN91973.1" FT /translation="MNSLFQECYTESLMDDNTDTIITGKGRSAHNEGEYHLKSALRSHS FT DYVKNKHQAKDLLKLSEHTSVHASKNPCKLLPTLWKGVVEGEEWVEDEVAIYLKELYHD FT DETDDCALELLDAELEHVCHDDDKTGIMQGVVQCQEDAWNKHTIYGRANILRWALTRIV FT IDHNKEEPTELSPMGRKLDGGVFAYSLSSSLSMMISRSWCHLMINDSPGTINIQHLINT FT LDKLTERVNIMTYLTLCNKTGLSSIYPSVDITLRIIQLGDQLILNEGNNAFRGLASYEA FT ICVGEIINRGDSSVWDVGRFLNTMLQEVGALGENYKTWSSDVLVILQGLRIQQVSCLHG FT MYRIWGHPVVDLEKGLMKLRSVALMEKEIPPECARNTSNMFKEIFFTQYFRRHKFYPPH FT TWTGPEGSNYIKQVLSLEKELDIHNIRYHLEDWENIRCEKTFEIPATYSLASCIKDRAI FT SPKRSELVSMIIRGGSVMSQSSRRGVLKWLDSTMIPVREFLDGINESGLSKDNSIIGLY FT PKERELKMEARFFALMSFQMRLYFTITEHMANDNLLDYFPMVTMSDSMLELNKKLDTLS FT RKQITKKEGVVHYVVNIDFRKWNQQMREEMTVPMFLDADRLFGYTNLVGRTHEIFKSSY FT IYLSSGEYVPQVSLRGRLVHEEPYSWTNDPSGKEGLRQKYWTIMTACDLMYVARQHGLK FT IDLVGGGDNQVLIVEVTTDKVGDGGELTTEGKSECKYKMGTFMSHLSNYMEKKGLPLKT FT EETWISPNLLMFFKMMYYDHTTLVSPLKQASRVFPLSNDQVMTIGNMAATVSSGVTVLS FT SKDMQIGPAAAFGRLICADLASLVTKDHPLSDGGEMWSDSINICRGGSRRKVNVRPDLK FT TPMRIFLSLTLLHKVMGGPAIVSPLGMMMRGFPDPLCEHLTWISMIKTKFPQATNFACM FT SINTKVPWAHLLEDPVSVNHDAPMHGLAVLRREAEQALAKASGYKNRDFMDLARCCNKS FT QMEGLAEALCSGKNVDIRVLHDVMGASLGGYFNSIASKVNKTATVLRMNKSSSVIATIA FT GQERHCMSYFAASSSVPHDLTPLKCPTATARRYRRLSWGKEILSITTPHPAAFLTPVIG FT DHQCDHNYVQTKTSGGNLINPHSRGPYPVYMGSYTKEKFKPTEMAAAYGEEDLLSRPIH FT LMKLINWRYSSSSNMARTLKCLLSSLTDADATLFYGMMEWIAGDAEHRYQDMATKHGGV FT PNVAHSILSYVRAHTTTFRKHSRGGKNETLHFQAVMIYTSMIALFKKYGGIIHWHESCG FT ECIQQTVGNVDVVLTKRVEFPILKGNLFAYVPAESIKFHYHDMKRIRSVEDLGFRTVSY FT ESMSSLDRRTASISMLSAVISSSESRDKSSVTMSSIEMWAGTVNLTEIIPAVCLRVSVA FT ELMRTGEWSWPKPHLKRRIIMLLEPFIRSKLGRYQLLEMGVTLDELRSNNPGVLLDIIQ FT VVMDNSRMTPKIIPNRVSPSWANDVICAKIYENEHIIFCSGCLAKGPCVDKVEICNDIL FT MEYTFKVCSATLPVLKGDMSQIICDRDFSNDPDWTSSPVQLFEMMDNPAAQFTPFPRDG FT PIAVSRPLGSAGLSSILDILAETNGIIMVGDDSVSITIWRQFRATRRVMIFKTGDNHLE FT AACDFICMAPDEADLLMDSESPDGKADVYYGDNIPVAPGWWIVTSRKDVNRLYKYGKDM FT SPTRVLISKDRGQTRAICAVKMEQSPGQKWGDFQATYKKIEMRCGNYSGMVRNPTSKNK FT LVSCAVSLFHRVNGDIEEAVKCCVTEMRTIFWRNELYTKKAKELMYLMSTLHMAGMEGG FT IEFARRSIKPRAVRRPYRILIKTTARNNYKAANDVTDVRELFRVTPKPTGAPGGDIIIN FT IGK" FT mat_peptide 852..3284 FT /product="RNA-dependent polymerase" FT misc_feature 3396..4049 FT /note="mRNA-capping region V" FT 3'UTR 5817..5860 XX SQ Sequence 5860 BP; 1726 A; 1258 C; 1498 G; 1378 T; 0 other; acacaggaca accaactgtc tcattgcgaa gtcaaattcc gtgatgggtc cgtctttcct 60 agaataaggg aaggatacta taggattgat cctagttctt ctctacgctg ggtgctacac 120 ggatcatgca aaacaaccaa atatcatata ttattgcgca tacacttttg aactaatcag 180 atatgaattc actgtttcag gaatgttaca cagagtcctt aatggacgat aacacggaca 240 ccatcatcac cggtaagggg agatctgccc ataatgaggg agaataccat ctaaagtctg 300 ccctgaggag ccacagtgat tatgtgaaga acaagcatca agccaaggat ctgctaaagc 360 tcagtgagca tacatccgta catgcatcga agaatccatg caaactgcta cccactctat 420 ggaagggagt ggtcgaaggg gaggagtggg tcgaggatga ggttgcaata tatctaaagg 480 agctctatca tgatgacgag actgatgatt gtgctcttga gctcctcgat gcagagctgg 540 agcatgtgtg ccacgacgat gacaaaacag ggataatgca gggggtcgta cagtgtcagg 600 aggatgcatg gaacaaacac accatctacg gtagagctaa catccttcgg tgggccctga 660 caaggatagt gatagatcat aataaagagg agccaacaga gcttagtccc atggggagga 720 agttggatgg cggggtgttt gcttattcat tgagcagctc attatctatg atgataagca 780 gaagttggtg tcatctgatg atcaatgaca gccccggaac catcaacatt cagcatctga 840 tcaacaccct ggataaactg acagaacgag tgaacataat gacttatcta accctctgca 900 acaagactgg gctctcaagc atttatccgt cagttgacat cactctgaga atcattcagc 960 taggtgacca attgatactg aatgagggca ataatgcctt tcgcgggctg gccagttatg 1020 aagctatctg tgtaggtgag ataatcaaca ggggggactc atcagtgtgg gatgtcggga 1080 gatttctcaa caccatgcta caggaggttg gtgcattggg ggagaactac aagacatggt 1140 catcagatgt tctagtaata cttcaaggtc taaggataca acaagtgtca tgcctgcatg 1200 gcatgtatcg catctgggga catccggttg ttgatcttga gaaaggcctc atgaagctcc 1260 gctcggtggc tctgatggag aaagagattc cgcctgaatg tgccaggaat acctccaaca 1320 tgttcaagga gatattcttc acacagtatt tcaggcgaca caagttttac cctccacata 1380 cctggactgg tcctgaagga agcaattaca tcaagcaggt cctatcactt gagaaagagt 1440 tagatataca caacataaga tatcacttgg aggactggga gaatatcaga tgtgagaaga 1500 cattcgagat cccggccaca tacagccttg catcatgtat caaagataga gcaatatccc 1560 caaaacgatc agagttggta tccatgatca ttagaggagg atctgtaatg agtcagagct 1620 ccagaagggg ggtgttaaaa tggctggaca gtaccatgat ccccgtgaga gaattcctgg 1680 atggtataaa tgagtcggga ttgtcaaagg acaactcaat tattggccta tatcctaaag 1740 aacgagagtt gaagatggag gccaggttct ttgctctgat gtcctttcaa atgaggttgt 1800 acttcacaat tacagagcat atggcgaatg acaacctcct ggactacttt cccatggtca 1860 caatgtccga cagcatgctg gagctgaaca aaaagctgga cactctaagt agaaagcaaa 1920 tcacaaagaa ggagggtgtg gtacattatg tggtcaatat agatttcaga aaatggaacc 1980 aacagatgag ggaagagatg actgtcccta tgtttcttga tgctgataga ctgttcggtt 2040 acaccaatct ggtggggcgg acgcatgaga tctttaagtc ctcatatata tacttatcct 2100 caggggaata cgtaccacaa gtctcactca gaggaaggtt ggtgcatgag gagccctaca 2160 gttggaccaa tgacccctct gggaaggaag gtctgaggca aaaatattgg accatcatga 2220 ctgcatgtga tttgatgtat gtggctagac aacatgggct gaagattgat ctggtaggcg 2280 ggggtgacaa tcaggtcctg attgtggaag tgaccacaga caaagtcggg gatggaggtg 2340 aattgaccac ggaggggaag tctgagtgca aatacaagat ggggacattc atgagccatc 2400 tgtccaatta catggagaag aaaggcctgc cgctgaaaac agaggagacc tggatttcac 2460 ccaacctact catgttcttc aagatgatgt attatgatca tactactctg gtgtcacctc 2520 tcaagcaagc ctcgagagtg tttccgctgt caaatgatca agtcatgact attggcaaca 2580 tggcagccac tgtatcttcg ggggttacag tactatcctc caaagacatg cagattggcc 2640 cagcagctgc ttttggaaga ctcatatgtg ctgatttagc atcgctggtc accaaggatc 2700 atcccttgtc tgatggagga gagatgtggt cagacagcat aaatatttgc agaggtggct 2760 ctaggaggaa ggtcaacgtt aggccggacc tcaaaactcc gatgaggatt ttcctgtcat 2820 taacactcct gcacaaggtc atgggaggtc cagccatagt atcacccctg ggtatgatga 2880 tgaggggatt tcctgatccg ctttgtgaac acttgacttg gatcagtatg ataaagacaa 2940 aattccccca agccactaac tttgcttgta tgtccatcaa caccaaggtt ccttgggctc 3000 acctacttga agacccggtc agtgtcaacc atgatgctcc catgcatggg ctggctgtgc 3060 ttagaagaga ggcagagcaa gccctcgcta aagcctctgg ttataagaat cgagacttta 3120 tggatctggc ccgctgttgt aacaagagtc agatggaggg actggctgag gcactatgct 3180 ctggcaagaa tgtggatata agggtgttgc atgatgtcat gggtgcaagc ttaggaggat 3240 atttcaactc catagcctcc aaggttaaca agactgccac tgtcctgaga atgaacaaaa 3300 gctcctcagt catcgcgacc attgcgggac aggaacgaca ctgcatgagt tattttgccg 3360 catcatcatc agtgcctcac gaccttactc ccctgaaatg tccgacagcc acagctagga 3420 ggtacagaag attgagctgg ggcaaggaaa tcctgtccat aactaccccg catcctgcag 3480 ccttcctgac accggtgatt ggagaccatc aatgtgacca caactatgtg cagaccaaaa 3540 catcgggagg gaacctgatc aacccacact ctagagggcc atacccggtt tacatgggct 3600 cgtataccaa ggagaagttc aagcccactg agatggcggc ggcttacgga gaggaggacc 3660 tactgtccag acccatccac ctgatgaagc tgatcaattg gagatactca tcatcatcca 3720 acatggcccg taccctcaaa tgcctgttga gctctctgac tgatgctgat gctacacttt 3780 tctatgggat gatggagtgg attgcaggag acgcagagca taggtaccag gacatggcta 3840 ccaaacacgg gggggttccc aatgtcgccc actctatact gtcttatgtc cgagctcaca 3900 ccaccacatt caggaagcat tctcgaggag ggaagaatga gacacttcac ttccaggccg 3960 tcatgatata cacatcaatg atagccctgt tcaagaaata cgggggaatt atccattggc 4020 atgagagctg tggagagtgc atccaacaga ctgtcggcaa tgtggatgtg gtcctgacga 4080 agagggtgga attcccaata ttgaaaggaa atctctttgc atatgtcccg gcagaaagta 4140 tcaaattcca ttatcatgac atgaagagga tccggtctgt ggaggatcta ggattccgta 4200 ctgtgtcata tgaatccatg agctccttag acagaagaac cgccagcatc agcatgctgt 4260 ccgcagtgat atcatccagt gagtccaggg acaaatcatc ggttaccatg agtagcatag 4320 aaatgtgggc cgggactgtc aatctcacag agatcatccc cgcagtgtgc ctgagggtgt 4380 cagtggcaga gctcatgaga acaggcgaat ggtcatggcc taagcctcac cttaagaggc 4440 gaataatcat gttattagaa ccattcataa ggtcaaagct ggggaggtat cagttgttgg 4500 aaatgggtgt gactctggat gaattacgat ccaacaatcc tggagtgctc ctggatatca 4560 ttcaggtagt catggacaac agcaggatga caccgaagat catccccaat agagtttccc 4620 ccagttgggc caacgatgtt atatgtgcta agatatatga gaatgagcat atcatcttct 4680 gttccggatg tttggcgaaa ggtccatgtg tggataaagt ggagatatgc aatgatatcc 4740 ttatggaata caccttcaag gtatgctcag ccacattgcc ggtcctcaaa ggagacatgt 4800 ctcagatcat atgtgataga gacttctcaa atgacccgga ttggacttca tcgcctgtcc 4860 agttgttcga aatgatggac aatccagctg ctcagttcac tccattccca agggacgggc 4920 ccatagctgt gtcaaggcca ctgggcagtg ccggattatc aagcattctg gatatactgg 4980 cagagaccaa tggaattatc atggtcgggg atgacagtgt cagtatcact atatggagac 5040 agttcagagc aaccaggagg gttatgatct tcaagacagg ggataatcac cttgaagctg 5100 cctgtgactt catatgtatg gcccctgatg aagcagacct acttatggac agtgaaagtc 5160 cggacgggaa ggctgatgta tattatgggg ataacatccc tgtagctccc ggttggtgga 5220 tagtgaccag tcgaaaagat gtcaacagat tgtacaagta tggcaaagac atgagcccca 5280 ccagggtatt aatctccaag gacagaggtc aaaccagggc aatctgtgct gtcaagatgg 5340 agcaatcccc aggacaaaag tggggagact tccaagccac ctacaaaaag attgagatga 5400 gatgcggaaa ctacagtggg atggtaagaa atcccaccag caagaacaag ttagtatcat 5460 gcgcggtgtc attatttcac agggtcaatg gagatataga agaggcagtc aaatgctgtg 5520 tgacggagat gaggacgatt ttctggagga acgaattata tactaagaag gcaaaggagc 5580 tgatgtatct gatgtcaaca ctgcacatgg ccggcatgga gggcggaata gagtttgcaa 5640 gacgatctat caagcctagg gcagtgaggc gaccttacag gattctcatc aagacaaccg 5700 ctagaaacaa ctacaaggca gctaatgatg tcacagacgt gagagagcta ttcagagtaa 5760 ctcccaagcc taccggagca cccggaggag atatcatcat aaatatcggg aaataagtaa 5820 ttttgtttaa attatattca tttaaggaaa aaaaaaaaaa 5860 //