ID KF209275; SV 2; circular; viral cRNA; STD; VRL; 6269 BP. XX AC KF209275; XX DT 18-JUN-2013 (Rel. 117, Created) DT 05-AUG-2013 (Rel. 117, Last updated, Version 3) XX DE Citrus leprosis virus nuclear type isolate M2345 segment RNA1, complete DE sequence. XX KW . XX OS Citrus leprosis virus nuclear type OC Viruses; Riboviria; Negarnaviricota; Haploviricotina; Monjiviricetes; OC Mononegavirales; Rhabdoviridae; Dichorhavirus. XX RN [1] RC Publication Status: Online-Only RP 1-6269 RX PUBMED; 23887919. RA Roy A., Stone A., Otero-Colina G., Wei G., Choudhary N., Achor D., Shao J., RA Levy L., Nakhla M.K., Hollingsworth C.R., Hartung J.S., Schneider W.L., RA Brlansky R.H.; RT "Genome assembly of citrus leprosis virus nuclear type reveals a close RT association with orchid fleck virus"; RL Genome Announc 1(4):0(2013). XX RN [2] RP 1-6269 RA Roy A., Stone A., Otero-Colina G., Wei G., Choudhary N., Achor D., Shao J., RA Levy L., Nakhla M.K., Holingsworth C.R., Hartung J.S., Schneider W.L., RA Brlansky R.H.; RT ; RL Submitted (07-JUN-2013) to the INSDC. RL Citrus Research and Education Center, University of Florida, 700 Experiment RL Station Road, Lake Alfred, FL 33850, USA XX RN [3] RC Sequence update by submitter RP 1-6269 RA Roy A., Stone A., Otero-Colina G., Wei G., Choudhary N., Achor D., Shao J., RA Levy L., Nakhla M.K., Holingsworth C.R., Hartung J.S., Schneider W.L., RA Brlansky R.H.; RT ; RL Submitted (26-JUL-2013) to the INSDC. RL Citrus Research and Education Center, University of Florida, 700 Experiment RL Station Road, Lake Alfred, FL 33850, USA XX DR MD5; 65e77c3529c54faca1506f5200d47123. DR EuropePMC; PMC3735072; 23887919. XX CC On Jul 26, 2013 this sequence version replaced gi:511773027. CC ##Assembly-Data-START## CC Assembly Method :: Velvet v. 1.2.07 CC Sequencing Technology :: Illumina;Sanger CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6269 FT /organism="Citrus leprosis virus nuclear type" FT /segment="RNA1" FT /host="Citrus reticulata" FT /isolate="M2345" FT /mol_type="viral cRNA" FT /country="Mexico" FT /isolation_source="leaf" FT /collected_by="Gabriel Otero-Colina" FT /collection_date="15-Dec-2012" FT /db_xref="taxon:1344952" FT 5'UTR 1..227 FT CDS 228..1580 FT /codon_start=1 FT /product="nucleocapsid protein" FT /db_xref="GOA:R9W2V7" FT /db_xref="InterPro:IPR004902" FT /db_xref="UniProtKB/TrEMBL:R9W2V7" FT /protein_id="AGN91968.1" FT /translation="MANPSEIDYMTPLSAYEGVPAEYQEATSSPTPKEYTRDAAKAIPI FT CILPAPPGNEVEVAEAFREATQGTETVLTKLQLAQIMSLGFMVQMSGDPAALMQGVAEG FT SFLETMTMPDIKTRQDSRITAAIAAMALDPTEEGPDDLEDRSQQAEAENALSKARAMVY FT ICLSLMRLAVKPAESFMKGVHQIKQAYSVLVGEHSEFLFNYSYSEGMCRNIADMFNQCD FT DLKATLCHHCAIADETHHTNRKRHGLLRFLILQHVDLTGMIPYGMYIDMRRHFTLLTPG FT QLLTWLHDNQVSRPLSVIADINTRYDVSNGSDRFWRYSRGLDPGFFIALQQSKCVTLIA FT RMAHILVKGGAVAVNEYSDPRKAKSLENKPGLAAEADKFATEFVEAYNGLSGSSANAGP FT VSRKLYNQGRGIPTRRGLFTPPSARPAPVVNVHVPAASSSLAGALDAMNSE" FT CDS 1733..2446 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:R9VZ06" FT /protein_id="AGN91969.1" FT /translation="MFTTKVNMYPEVPSSSQVSDDIDNDTNIDEVAAFVRKWSAAGLSP FT PVTLAKNLRAWIASNTNPGNPLVLDDRMLSLTTMIWNTAAEHYTMIGKSQVNRMSSLID FT QLGEISGRKPQQGPSFDMPPPPPKRKHPDSLDTNPILGLIGQDWDEKKDKQWREKPADK FT KHLVLNWVLHEYLGVLTKPVTIKWITDNPSSLELGAVSAYALKHQASLSDCDKEALRAL FT VIQTVRNTPKRPCLD" FT CDS 2582..3694 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:R9W3J9" FT /protein_id="AGN91970.1" FT /translation="MHLNKTSTHVIDWYHICDNYNIYTFAYTDPPAGSKMSTLPVSTLH FT RSNARDEVRETAGRRMAHGSDSNVTDFNKNLQTAEAWQKRLIHKTTIKVTGSEGEGRIT FT MVRKPILFDIMNSLNSILPTSTKPTWIMGMAIKWVPTCDLSTTGTIKVSIQNKAVSNPV FT LRDHTVVSMTQRVTTPFEVQYTSSSKLANRTGTRGNPWMYTYCIEGMNDAPIDMEVGDI FT VVMPMIKSDDTNTQWYEGVKCNVYGGYFPLNIPVVTYCAPGPRFKTNMNEIRSNIEMLR FT RYLNVQGFTDVDEDLVFKMIQCCDGETAGSIMKGIRSSVWAPLAKTDKDYVVIKEMLHD FT CRVGRILSYITLSEVEGLSTMGGDKSHSYR" FT CDS 3835..4386 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:R9W1A5" FT /protein_id="AGN91971.1" FT /translation="MSKQINMCTVMSFRSLITVIGPRAVDLGAGFKEAVLRAITSLRIK FT AKDPKGTEIEGPWQELLVEIATMTKSAFTGPTIKKDLEQGNVYRYAMTVGGMLSTSHNT FT NERLMTVRTGPLYDTDHYHVSGEVDIDKMDGFRASITLSVATVKRERQQCEAGIGEYRV FT LPIKGKNPPRSSSNTAGPSG" FT CDS 4555..6213 FT /codon_start=1 FT /product="glycoprotein" FT /db_xref="GOA:R9VZL9" FT /db_xref="UniProtKB/TrEMBL:R9VZL9" FT /protein_id="AGN91972.1" FT /translation="MMAPTNQPDTMSIFRSSIILMLSLISGSGALSLVPKTVCEKEVGL FT HVDEWLHSCLGACKSSDNDLDLTPHMLMEPTLGYFKAFGYFIHVSTLTKSSHTFLFGGC FT HITSQETPSDSQELPTNMAENILRHGGPEGEVFMTKEPQCSLWSDNYVKGMLVKYHRVI FT LTVSHTERGITVLYEQEGVIGHGKVGKAMSSSGTLVWDIRAQYPKCNYRPTGVLSCKRE FT GSYIRCRGMSEERISSTKEDCGVIILTTDTRNIYGYHKHDGALATTQTDDNQIGMVKKI FT IEIENLMCHHLCESSSEEGGVTHHEYLVSTPIGPWLSVSTESHRTMFMCTDESIVSLVV FT PVVLCGNGPLVKVRVNEKEQWWNISSPYVGMGTHCVPGLSTGLSTADGVINTWLGQVTI FT VNGSFTFKRDFINKNFHGAFRPSQFSWTHKTGNDLEHIIDALNTQEKVLSHSHVIESHS FT VGAGENALHSFIGMFTTVFEWIQSLIPSVKGWIIKVFLWALLAALAVLLLWILWKILWL FT FIKSVFVRRSIRAIPTSENSDTSLNRAIHNWAKMD" FT 3'UTR 6214..6269 XX SQ Sequence 6269 BP; 1815 A; 1481 C; 1513 G; 1460 T; 0 other; acacaggata acccgctatt ggtcttctag tgcaagtggc agaaatgacc gcttaaacag 60 atcccctaag tttggatgct gagctagcgc ggtagtgtat tggtgagtcc ttctccctta 120 gctacggtca cagccctgag tacatgatgt aaacaaaaca acaagtggat aataactaca 180 ttgattggac aaaattgtac taatatatct ctctctacgt aggaaacatg gctaacccaa 240 gtgagatcga ttacatgact cctctctctg catacgaggg ggttcccgcc gaatatcagg 300 aagcaacaag ctccccaacg ccgaaggaat ataccagaga tgcagccaaa gcaatcccaa 360 tatgcattct tcctgcccca ccaggtaatg aggtcgaggt ggctgaagcc ttcagggagg 420 caacacaggg caccgagaca gtcctgacaa agttgcagtt ggcacaaata atgtctctgg 480 ggttcatggt ccagatgtcg ggggatcctg cggcattaat gcagggagtg gcagaaggtt 540 cattcctgga gaccatgacc atgccggaca tcaagacaag gcaggacagc cggatcacag 600 cagccattgc agccatggca ttggacccaa cagaggaggg gccagatgac ctggaagaca 660 gatctcagca ggctgaggca gagaatgcac tgtccaaggc tagggcaatg gtatacatat 720 gcttaagcct tatgaggcta gctgtgaagc ctgctgagtc attcatgaag ggtgttcatc 780 agatcaaaca ggcatattcg gtcctggtgg gagagcactc tgagttcctg ttcaattatt 840 catactcaga aggaatgtgc agaaacatag ccgacatgtt caaccaatgt gatgatctca 900 aggcaactct ttgtcatcat tgtgccatag cagatgaaac gcaccacacc aataggaaga 960 ggcacgggct tctcagattc ctgatccttc agcatgtaga tctcacaggg atgatcccat 1020 atgggatgta cattgacatg cgaaggcact tcaccctcct aacacccggc cagttgctga 1080 catggctcca tgacaaccag gtatccaggc ctctcagtgt cattgcggac atcaacacca 1140 ggtatgatgt ttcaaacgga tcagaccggt tctggagata ctcaaggggg cttgatccag 1200 gattcttcat agccttacaa caatcaaaat gtgtcaccct gatagccaga atggcacata 1260 tactggtgaa gggaggagcc gttgctgtca atgagtactc cgacccccga aaagcaaagt 1320 cactggagaa caagcctggg ctggcagcag aggctgacaa gtttgccaca gagtttgtgg 1380 aagcatacaa cggcctatca gggtcaagtg ctaatgccgg ccctgtgtcc cgcaaactct 1440 acaaccaagg cagaggtatt cctacccgca gaggcctatt cacacctccc tccgccagac 1500 ccgcacctgt tgtgaatgtg cacgtcccag ccgcctcgtc ctctttggca ggagccctag 1560 atgctatgaa cagcgaatga caaccatcct ctcatggcaa actcccatcc ctatcgtgac 1620 tacatgctat atatgtgtgc atttaaataa aacaacaaca gggaaactta tgtttgctca 1680 tctcctcacg cacacacact aacagcctca catatattct ctttccagga caatgttcac 1740 caccaaggta aatatgtacc cagaggtccc cagctcgtct caagtgtccg atgacataga 1800 caacgacaca aacatagacg aggtcgcagc atttgtgagg aaatggtcgg ctgccggact 1860 atctccccct gtcacccttg caaagaacct tagagcatgg atagcaagca acaccaaccc 1920 agggaacccc ttggtgctgg acgacaggat gctaagtctc acaaccatga tatggaacac 1980 agcagcggag cattatacca tgatcggcaa atcccaggtc aatcgcatgt catcactcat 2040 tgaccagctg ggggagatct ccggccgcaa gccacaacag ggtccctcgt tcgatatgcc 2100 acctccccct cctaagagga aacacccaga ctctctagac actaacccta ttttaggctt 2160 aataggtcag gactgggacg aaaagaagga caaacagtgg agggagaagc cagcagacaa 2220 gaaacatcta gtgctcaact gggtgttaca cgagtacttg ggagtcctaa caaaaccggt 2280 gacaatcaag tggataacag acaatccatc gtccctggag ttgggagcag tttcagcgta 2340 tgccctaaaa catcaggcca gcttgtccga ctgtgataaa gaggccctca gagcactcgt 2400 gatccagaca gtgaggaaca cccccaagag gccatgcctg gactaggtga tatcctatca 2460 gccctatcat atatatgttt ctcattgtca gtcatgcata tgataataga gatgctcaac 2520 agcgactcac cagactccat aatatatgta ctaggcatta tgcagtacgt tgttgtaata 2580 catgcattta aataaaacat caactcatgt cattgactgg tatcatattt gtgataatta 2640 taatatatat acttttgctt atactgaccc tcctgcagga tctaagatgt ccacattgcc 2700 agtgtccact cttcacaggt ccaacgctag ggacgaggtc cgagagacgg caggccgtag 2760 gatggcccac gggtccgaca gcaatgtgac agacttcaac aagaatctgc aaactgctga 2820 ggcttggcag aaacgtctaa tacacaagac aaccattaag gtgactgggt cggagggtga 2880 gggaaggatc accatggtga ggaagcccat attgtttgac atcatgaaca gcctgaacag 2940 catacttccc acatcaacga aacctacatg gatcatgggg atggccatta aatgggtccc 3000 aacatgtgac ctatccacca cagggaccat caaagtgtcg attcagaata aggctgtcag 3060 taaccctgtt ctaagggatc atactgttgt ctccatgacc caaagagtta caaccccatt 3120 cgaagtccaa tacacatcat cctccaagct cgccaataga acaggcacaa gggggaatcc 3180 ctggatgtat acatactgca tagagggaat gaatgacgct ccgatagaca tggaggtggg 3240 ggatattgtt gtcatgccca tgatcaagtc tgatgacact aatacacagt ggtatgaggg 3300 cgtgaagtgt aatgtgtatg ggggttattt ccctctgaac atacctgtgg tcacctactg 3360 tgcacccgga cctaggttca agaccaatat gaatgagata aggtcaaaca tagagatgct 3420 caggaggtac ctcaacgtcc aggggttcac tgatgtggat gaggatttgg tcttcaaaat 3480 gatacagtgc tgcgacggag agactgcagg gtccataatg aaagggataa gatcctccgt 3540 gtgggcccct ttagctaaga ctgacaagga ttatgttgtc attaaggaga tgcttcatga 3600 ctgtcgtgtg ggcagaatac tgagctacat caccctcagc gaggtggagg gtcttagcac 3660 tatgggaggg gacaaaagcc acagttatcg ttaagtgtga ctcaggcgaa gtaccctgga 3720 gaagaatccc gcctatccaa taaacatgtc tacttaccta ccataattta aataaaacaa 3780 caatcatcga atcattgatt attcatatat cagatctaac aattgtcttt tgtcatgtct 3840 aaacagatta atatgtgcac tgtgatgtcc ttcaggtccc taatcaccgt gataggaccc 3900 agagcagtgg atcttggagc cgggttcaag gaggcggtgc tgcgtgctat cacttcactc 3960 aggatcaagg ctaaggaccc caaagggaca gagattgagg gtccctggca ggagctgctg 4020 gtggagattg ccactatgac aaagtcagca ttcaccggcc ctaccatcaa gaaagacctg 4080 gagcagggga atgtctatcg ttacgcaatg acagttggcg gcatgttgag cacctcacac 4140 aacacaaacg agaggctgat gactgtcagg actggaccac tatatgatac tgaccactac 4200 catgtgtcgg gggaggttga tatcgacaaa atggatggtt tcagagcttc gataacatta 4260 tctgtggcca ctgttaagag agaacgtcaa cagtgcgagg caggcatcgg ggaataccgt 4320 gttttaccga tcaagggcaa aaatccccca cgatcctcca gcaacaccgc gggacccagt 4380 ggttagagcc atcaacagct cagggcctgc tctccctcct atcagacgtg gatgattact 4440 tacggaggaa gaagtctcga ctatcctatg ttttgaagga cggtgaatga aacatataat 4500 catatacatg tcttaatgat atgatctata tacccttatt taaataaaac aataatgatg 4560 gcaccgacaa accagcccga cactatgtca atcttccgct cctcaatcat attaatgctt 4620 tcccttatct caggttccgg agcgctatcc ttggttccta agacagtttg tgagaaagag 4680 gtggggctgc atgtggatga atggctccac tcatgtttgg gagcatgcaa gagcagcgac 4740 aacgatctag atctgactcc acacatgtta atggagccca cattggggta tttcaaggcc 4800 ttcggatact tcatacatgt gtcaaccctt accaaatctt cacacacttt cctgttcgga 4860 gggtgtcaca tcacatcaca agagactcct agtgattctc aggagcttcc caccaatatg 4920 gccgagaata tactgagaca tggcggccct gagggagagg tatttatgac aaaagagccc 4980 caatgcagcc tctggagcga caattatgtg aaaggcatgc ttgtgaagta tcacagggtg 5040 attttgactg tctcgcacac cgaaagaggg ataacggttc tttacgagca ggagggagtg 5100 ataggccacg gcaaggtcgg taaagccatg tcatcatcgg gtactctcgt gtgggacata 5160 cgggcacaat acccaaagtg caactatcga cctacggggg ttcttagctg taaacgagag 5220 ggatcctaca tacgttgcag aggtatgtca gaggagagaa tctcatccac caaggaggac 5280 tgcggggtca ttatattaac gacggacaca aggaatatat acgggtacca taaacatgat 5340 ggtgcattgg ccacaactca gacggatgac aatcagatag gtatggtgaa gaagatcata 5400 gagatagaga atcttatgtg tcatcatcta tgtgagtcct catctgagga ggggggagtg 5460 acacaccatg aatatttggt ctccactcct ataggaccat ggctatctgt atccacagag 5520 tcccatcgca ccatgttcat gtgtacagat gaaagcatag tgtcactggt ggttcctgtg 5580 gtactatgtg gcaatggacc cttggtgaag gtaagggtca atgagaagga acaatggtgg 5640 aatatctcct ctccgtatgt tggcatgggg actcattgtg tcccaggctt gtctacaggc 5700 ttatctactg ctgacggtgt gataaacaca tggttaggac aagtcaccat agtgaatgga 5760 tccttcactt tcaagcgtga tttcatcaat aagaatttcc acggggcttt caggccaagc 5820 cagtttagct ggacccacaa aacaggcaat gatcttgaac acatcataga tgctctgaat 5880 acacaggaga aagtcctaag ccactctcat gtaatagaat cacacagtgt gggagccgga 5940 gagaacgcgt tgcactcgtt cattggtatg ttcacgactg tattcgaatg gatacagagc 6000 ttaatcccaa gtgtcaaagg gtggatcatc aaagtcttcc tgtgggcatt gttagcagct 6060 ctggcagtat tgttactatg gatattatgg aagatattat ggttgttcat caaatctgtg 6120 tttgtaaggc ggtctattcg ggcaatccca acatcggaaa attcagacac atcactgaat 6180 cgggccatcc acaattgggc caagatggat taaccaggtc agttcggggc tcttcatata 6240 tatatatata gctaataaat ttaaataaa 6269 //