ID KC876666; SV 1; linear; genomic RNA; STD; VRL; 3908 BP. XX AC KC876666; XX DT 16-JUN-2013 (Rel. 117, Created) DT 02-JAN-2014 (Rel. 119, Last updated, Version 2) XX DE Hibiscus chlorotic ringspot virus isolate HCRSV-Is, complete genome. XX KW . XX OS Hibiscus chlorotic ringspot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betacarmovirus. XX RN [1] RC Publication Status: Online-Only RP 1-3908 RX PUBMED; 24336382. RA Luria N., Reingold V., Lachman O., Dombrovsky A.; RT "Full-genome sequence of hibiscus chlorotic ringspot virus from Israel"; RL Genome Announc 1(6):e01050-13(2013). XX RN [2] RP 1-3908 RA Luria N., Reingold V., Lachman O., Dombrovsky A.; RT ; RL Submitted (09-APR-2013) to the INSDC. RL Plant Pathology, ARO, The Volcani Center, Bet Dagan, 1 Hamacabim St., RL Rishon Le-Zion, Bet-Dagan 50250, Israel XX DR MD5; e8078b84265fb95ef2a0069dcf49f35b. DR EuropePMC; PMC3861435; 24336382. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3908 FT /organism="Hibiscus chlorotic ringspot virus" FT /host="Hibiscus rosa-sinensis" FT /isolate="HCRSV-Is" FT /mol_type="genomic RNA" FT /country="Israel" FT /isolation_source="leaf" FT /collection_date="15-Feb-2012" FT /db_xref="taxon:53181" FT gene 31..2238 FT /gene="RdRpP81" FT CDS 31..2238 FT /codon_start=1 FT /transl_except=(pos:673..675,aa:OTHER) FT /gene="RdRpP81" FT /product="RNA-dependent RNA polymerase P81" FT /db_xref="GOA:R9UP09" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:R9UP09" FT /protein_id="AGN70380.1" FT /translation="MLTHAFSIAFETVSLGAALCVAPFAAAVEIVTHPRIAPRDPCVAE FT ELCMRDELEVVDPTDEEPEACLENIPGSSGDKKVSKIKRRHRGKFALHAAIAAKLHFGG FT TPTPTRSNELAVRRWLASYCKERRLVDTHALQAIALATPLVLTPGAAEITERAILNSAV FT FGMRRAALAEASKPTSLGYQMVFEPHRPRTWLRAWRKVVGLPDFQGYSPVKXGCLREIA FT GVDTKIVRGEHQSMAVFPREGISKPRRIFQVCGMGNGTTFGVHNNSLTNLRRGLVERVF FT YVEDACKNLVPTPRPLPGKFQELKYLARRVARIAGHHTPIPREQYPGLYKGRRYQIYAD FT AVNSLASNPVHRRDSFLKTFVKAEKINFSAKPDPAPRVIQPRDPRYNVEVGRYLKPYEH FT HLYRALDVVWKGPTVLKGYTVSEIGSIMHSHWSQFQKPCAVGFDMKRFDQHVSVDALRF FT EHSVYGRSFCSKELDRLLEWQLLNSGVGHANDGYIRYKVDGCRMSGDVNTAMGNCLLAC FT LITKHLLKGIRCRLINNGDDCVLFFNTPDLAAVTERLAHWLDFGFQCVVEEPVYELEEV FT EFCQMKPVFDGEEWVCVRNVHVSVAKDTYSINPWNNENDAGRWIRAIGECGEALTGGIP FT VLNAYYKVFKRAYKAPGKVKESLAFDSGMYRLSQRCSRSFHEPTEEARVSFFKAFGVDP FT MAQMAIEEFYDSLDIELEFAPEGKLDDISLLWLLRKRMIAS" FT gene 31..675 FT /gene="P28" FT CDS 31..675 FT /codon_start=1 FT /gene="P28" FT /product="P28 protein" FT /note="unknown function" FT /db_xref="UniProtKB/TrEMBL:R9UKN6" FT /protein_id="AGN70379.1" FT /translation="MLTHAFSIAFETVSLGAALCVAPFAAAVEIVTHPRIAPRDPCVAE FT ELCMRDELEVVDPTDEEPEACLENIPGSSGDKKVSKIKRRHRGKFALHAAIAAKLHFGG FT TPTPTRSNELAVRRWLASYCKERRLVDTHALQAIALATPLVLTPGAAEITERAILNSAV FT FGMRRAALAEASKPTSLGYQMVFEPHRPRTWLRAWRKVVGLPDFQGYSPVK" FT gene 41..670 FT /gene="P23" FT CDS 41..670 FT /codon_start=1 FT /gene="P23" FT /product="P23 protein" FT /db_xref="UniProtKB/TrEMBL:R9UNN1" FT /protein_id="AGN70382.1" FT /translation="MLSQLLSKLSLSVRHYVSRLSPQLLKLLHTHVSPHGILASLKNCV FT CAMSLRLLIPLMRNLKLVWRIFPVLQAIRKCLRSRGDIGVSLRSMRLSQQSYTLGVLQP FT QRARMSLLCDGGLQVIARKGGWLTHTLYKRSLWPLLWYLRQGPLKSLKERSLIVLSSVC FT GERLLLKPLSRLVSDTRWCLSHIGRGLGLGPGGKWWVSLIFRGTRP" FT gene 2205..2417 FT /gene="P8" FT CDS 2205..2417 FT /codon_start=1 FT /gene="P8" FT /product="putative movement protein P8" FT /db_xref="GOA:R9UKK1" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:R9UKK1" FT /protein_id="AGN70381.1" FT /translation="MASTQTNDSFIELNPHDTGHNKGAGKGNRQAKKEVALQAVHKANK FT QDEAISGGSFVFVADKVEVTININF" FT gene 2344..2684 FT /gene="P9" FT CDS 2344..2580 FT /codon_start=1 FT /gene="P9" FT /product="P9 protein" FT /db_xref="GOA:R9UM97" FT /db_xref="UniProtKB/TrEMBL:R9UM97" FT /protein_id="AGN70383.1" FT /translation="MKLFLGVLLFLLLIKLRLPLTSTFDIDLRTLRENCFIIATLSLFG FT FFITVLIKAESEHHHFHSHDSSKTQNIVVNTGK" FT gene 2587..3624 FT /gene="P38" FT CDS 2587..3624 FT /codon_start=1 FT /gene="P38" FT /product="coat protein P38" FT /db_xref="GOA:R9UKP1" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:R9UKP1" FT /protein_id="AGN70384.1" FT /translation="MVQKNVPAVQSAFKAHFPWAIKIKTDGWAVLFKGQKGAANRYAGG FT TRPVTSQIKLSTLKVTAPVAASMRTRNPGANIRTAGKSVTVVHCEFVGNIARQTGSGLL FT VVERTINPSNVLSFPWLSVLAAGYEKYRVSSLSLRYSPTCATTTEGKVILAFDKDAADA FT SPTSKSDMYNHDGAVGVSPWDSAMLQIPCDNVDRFINDSSSSDPKLVDFGKVVVANYGQ FT SEGDVDVIGELFLQYSVTLKIPQGTATLTQSGVGISSVGPSLFRVQLRDGTYVFTCNGT FT GRFLFFFNSTVDATSTIAGMEVKQKSSTDDKGETTIMELLATESGGMIAIMVATGTLTW FT WACRN" FT gene 2600..3274 FT /gene="P25" FT CDS 2600..3274 FT /codon_start=1 FT /gene="P25" FT /product="P25 protein" FT /db_xref="GOA:R9UP14" FT /db_xref="UniProtKB/TrEMBL:R9UP14" FT /protein_id="AGN70385.1" FT /translation="MSQPFKVRLKPIFPGQSKLRRMGGLFFLRVKRGQPIDTRVEPVLL FT LLKLSCQHLRLQLRWPPRCGLVTLEQTLGRLENRSLSSIASLWAISPGRLVVGYWWSRE FT RLTPATYSASPGFLYLLPDMRSTACHHYLFDILQLAPLRRRARSSWHLIKMLQMLPLPP FT RATCITMMEQLESRPGIVPCCKYLVIMWIGLLMIPVVPTLSLLTLVRWLLPIMANLKGM FT WM" XX SQ Sequence 3908 BP; 965 A; 900 C; 1027 G; 1016 T; 0 other; gggaaaccgt ggcaagtttc cgaacgctcc atgcttactc atgctttctc aattgctttc 60 gaaactgtct ctctcggtgc ggcactatgt gtcgcgcctt tcgccgcagc tgttgaaatt 120 gttacacacc cacgtatcgc cccacgggat ccttgcgtcg ctgaagaatt gtgtatgcgc 180 gatgagcttg aggttgttga tcccactgat gaggaacctg aagcttgtct ggagaatatt 240 cccggttctt caggcgataa gaaagtgtct aagatcaaga ggcgacatag gggtaagttt 300 gcgctccatg cggctatcgc agcaaagcta cactttgggg gtactccaac cccaacgcgc 360 tcgaatgagc ttgctgtgcg acggtggctt gcaagttatt gcaaggaaag gaggttggtt 420 gacacacacg ctctacaagc gatcgctttg gccactcctc tggtacttac gccaggggcc 480 gctgaaatca ctgaaagagc gatccttaat agtgctgtct tcggtatgcg gagagcggct 540 cttgctgaag cctctaagcc gactagtctc ggataccaga tggtgtttga gccacatcgg 600 ccgaggactt ggcttagggc ctggcggaaa gtggtgggtc tccctgattt tcaggggtac 660 tcgcccgtga aataggggtg ccttagggaa atagctggtg tggacaccaa aattgtccgt 720 ggagagcacc agtctatggc cgtattccct agggaaggaa tctccaaacc ccggcgcatc 780 ttccaagtct gtggaatggg taatgggacc actttcggag ttcacaacaa ttccttgact 840 aacttaagga gaggtcttgt tgagagagtg ttctacgttg aagatgcctg caaaaatcta 900 gtcccaaccc ctcggcccct acctggaaaa ttccaggagc tgaagtatct ggctcgacgt 960 gtcgctcgta ttgctggaca tcatacccct atccccaggg agcaatatcc tgggttgtat 1020 aagggcagga ggtaccaaat ttacgccgat gcggtcaaca gtttggcgtc gaacccggtt 1080 caccggcgag actcctttct gaagacattc gtgaaagcag agaagatcaa cttctctgcg 1140 aaaccagacc ctgctcctag agttattcag ccaagggatc cgagatataa tgtagaggta 1200 ggtagatatc ttaaacccta cgaacaccat ctatatagag ctctagatgt tgtttggaag 1260 ggtcctactg tgctaaaggg atatactgta agtgagattg gaagtattat gcattcacac 1320 tggtcacaat tccagaaacc atgtgctgtg ggttttgata tgaaacgatt tgatcagcac 1380 gtttctgtgg atgcgctgcg atttgagcac tctgtgtacg gaaggagttt ttgctctaag 1440 gagcttgaca gattgctcga gtggcagctc ctcaattccg gggtaggcca tgcgaacgac 1500 gggtacatta ggtacaaggt tgatggatgt aggatgagtg gggacgtgaa cactgctatg 1560 ggaaactgtc tcctcgcttg tctcatcacc aagcacctcc ttaagggcat cagatgcaga 1620 ctcattaaca atggcgatga ctgcgtcctc ttctttaaca ctccagatct agctgcggtc 1680 actgaaaggt tggctcactg gcttgatttt gggtttcagt gtgttgttga ggaaccagtc 1740 tatgagcttg aagaggttga gttctgtcaa atgaagccgg tgtttgatgg tgaggagtgg 1800 gtatgtgtgc ggaacgttca cgtgtcggta gcgaaggata cctactccat caatccttgg 1860 aataatgaga atgatgcggg caggtggata cgggctattg gggaatgcgg tgaggcactc 1920 accgggggca tcccggtgct gaatgcatat tacaaggtgt tcaaacgagc atataaagca 1980 ccaggtaagg tgaaagagag tttagctttc gattctggta tgtatcgact ctcccaacgg 2040 tgttctagga gctttcacga accaacagag gaagctaggg tgagcttctt caaggctttt 2100 ggggtggacc cgatggcgca gatggccata gaggagtttt atgactccct ggacattgag 2160 cttgagttcg ccccggaggg aaaacttgat gatatctctc tcttatggct tctacgcaaa 2220 cgaatgatag cttcatagaa ctaaatcctc acgacactgg tcacaacaag ggcgcaggta 2280 agggaaacag gcaagctaag aaggaggttg cactccaggc agtgcacaaa gccaataaac 2340 aagatgaagc tatttctggg ggttcttttg tttttgttgc tgataaagtt gaggttacca 2400 ttaacatcaa cttttgacat cgacttaagg accctccggg aaaactgctt cattatcgct 2460 acgcttagct tatttgggtt ctttatcact gtcctgatta aggctgaatc agaacaccat 2520 cacttccact cacacgacag tagtaagaca cagaacatag tagttaatac tggaaagtaa 2580 cccaccatgg tgcagaagaa tgtcccagcc gttcaaagtg cgtttaaagc ccattttccc 2640 tgggcaatca aaattaagac ggatgggtgg gctgttcttt ttaagggtca aaagggggca 2700 gccaatagat acgcgggtgg aacccgtcct gttacttctc aaattaagct gtcaacactt 2760 aaggttacag ctccggtggc cgcctcgatg cggactcgta accctggagc aaacattagg 2820 acggctggaa aatcggtcac tgtcgtccat tgcgagtttg tgggcaatat cgcccggcag 2880 actggtagtg ggctactggt ggtcgagaga acgattaacc ccagcaacgt actcagcttc 2940 ccctggcttt ctgtacttgc tgccggatat gagaagtacc gcgtgtcatc actatctctt 3000 cgatattctc caacttgcgc cactacgacg gagggcaagg tcatcttggc atttgataaa 3060 gatgctgcag atgcttcccc tacctccaag agcgacatgt ataaccatga tggagcagtt 3120 ggagtctcgc cctgggatag tgccatgctg caaatacctt gtgataatgt ggataggttt 3180 attaatgatt ccagtagttc cgaccctaag cttgttgact ttggtaaggt ggttgttgcc 3240 aattatggcc aatctgaagg ggatgtggat gtgatcggag agctattcct gcaatactcc 3300 gtcaccctca aaatccccca aggcacagcg acactaacac agtccggggt aggcatttca 3360 tcagttggtc cctccctctt ccgggttcaa ctcagagatg gcacgtatgt gtttacctgc 3420 aacggaactg gtcgcttctt gttcttcttc aactcaaccg ttgatgcaac ctccaccatc 3480 gctggaatgg aggtgaagca gaagagttcg accgatgaca aaggagaaac aacgataatg 3540 gaactactag ctactgaatc aggcggtatg atagcaataa tggtggccac aggcacactc 3600 acttggtggg cttgtaggaa ttaggtttgt attgtatggg cctccgtgaa gttaggggca 3660 gtggaaacgt cggtctagcc agccgtcccc tgggtagtgt gctctgtcta tgtacaccac 3720 tactcggttt ccacaaacga tcggactccc aatatagtgt acattatgtt gattgcttct 3780 ttctacctat ataatatctc ctctcatctc tcctctacgc ttggaatcca taaaatcctt 3840 cgggtgggct tggatttcgg gtacttgttt gaaattccct cacgaccgcc atagttgtga 3900 ggcagccc 3908 //