ID   KC841825; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
XX
AC   KC841825;
XX
DT   29-MAY-2013 (Rel. 116, Created)
DT   15-MAY-2014 (Rel. 120, Last updated, Version 3)
XX
DE   Citrus tristeza virus isolate T535 coat protein (CP) gene, complete cds.
XX
KW   .
XX
OS   Citrus tristeza virus
OC   Viruses; Riboviria; Closteroviridae; Closterovirus.
XX
RN   [1]
RP   1-672
RX   DOI; 10.3389/fmicb.2013.00366.
RX   PUBMED; 24339822.
RA   Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T., Yokomi R.K., Lee R.F.,
RA   Folimonova S.Y., Krueger R.R., Bash J., Greer G., Diaz J., Serna R.,
RA   Vidalakis G.;
RT   "Past and future of a century old Citrus tristeza virus collection: a
RT   California citrus germplasm tale";
RL   Front Microbiol. 4:366-366(2013).
XX
RN   [2]
RP   1-672
RA   Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA   Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA   Serna R.S., Vidalakis G.;
RT   ;
RL   Submitted (28-MAR-2013) to the INSDC.
RL   Department of Plant Pathology and Microbiology, University of California,
RL   Riverside, 900 University Ave., Riverside, CA 92521, USA
XX
DR   MD5; 4576abea3779e98522f62ecc1a53685a.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNA Dragon v. 1.5.3
CC   Assembly Name         :: CTV-CP
CC   Coverage              :: 3
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..672
FT                   /organism="Citrus tristeza virus"
FT                   /lab_host="Citrus sinensis"
FT                   /isolate="T535"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan"
FT                   /isolation_source="originally from an illegal introduction
FT                   of Shiranui Dekopon mandarin from Japan in to Navelencia,
FT                   Fresno County, California in 2000. Budwood of Etrog citron
FT                   graft inoculated with Shiranui Dekopon (#108-A,B,C and
FT                   #109-A,B) was given to Georgios Vidalakis (UC Riverside,
FT                   CCPP) from Raymont Yokomi (USDA-Parlier) for viroid testing
FT                   in 2006 (CCPP #3014)"
FT                   /collected_by="Central California Tristeza Eradication
FT                   Agency (CCTEA)"
FT                   /collection_date="2000"
FT                   /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq:
FT                   cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814,
FT                   rev_seq: gatgaaactccaccatcccgata"
FT                   /note="T535 is maintained in planta at the Citrus Clonal
FT                   Protection Program (CCPP), University of California,
FT                   Riverside; acronym: CTV; genotype: T30+VT+T36"
FT                   /db_xref="taxon:12162"
FT   gene            1..672
FT                   /gene="CP"
FT   CDS             1..672
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="major coat protein"
FT                   /db_xref="GOA:Q8B3T3"
FT                   /db_xref="InterPro:IPR002679"
FT                   /db_xref="UniProtKB/TrEMBL:Q8B3T3"
FT                   /protein_id="AGM39422.1"
FT                   /translation="MDDETKKLKNKNKETKEGDDVVAAESSFSSVNLHIDPTLITMNDV
FT                   RQLSTQQNAALNRDLFLTLKGKHPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDATGIT
FT                   YTREGVEVDLSDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT                   LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADDVVVTNVRQLGKFNT
FT                   R"
XX
SQ   Sequence 672 BP; 198 A; 127 C; 166 G; 181 T; 0 other;
     atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacaaaaga aggcgacgat        60
     gttgttgctg ccgagtcttc tttcagttcc gtaaacttac acatcgatcc gactttgata       120
     acgatgaacg atgtgcgtca gttgagtacc caacagaacg ctgctttgaa cagagactta       180
     ttcctcactt tgaaagggaa gcatcctaac ttacccgata aagataaaga ctttcacata       240
     gctatgatgt tgtatcgttt agcagttaag agttcatcat tacaaagcga tgacgacgcc       300
     acgggtataa cgtacactcg ggagggtgtt gaagtggatt tgtctgacaa actttggact       360
     gacgtcgtgt ttaactctaa gggtattggt aaccgtacta acgcccttcg agtttggggt       420
     agaactaacg atgcccttta cttagctttt tgcagacaga atcgcaattt gagttatggc       480
     ggacgtccgc tagacgcagg gattccggcc gggtatcatt acttgtgtgc ggatttcttg       540
     actggagctg gtttgactga tttagaatgt gctgtgtaca tacaagctaa agaacaatta       600
     ttgaagaagc gaggggctga tgatgtcgta gttactaatg tcaggcagct tgggaaattc       660
     aacacacgtt ga                                                           672
//