ID   KC841823; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
XX
AC   KC841823;
XX
DT   29-MAY-2013 (Rel. 116, Created)
DT   15-MAY-2014 (Rel. 120, Last updated, Version 3)
XX
DE   Citrus tristeza virus isolate SY553 coat protein (CP) gene, complete cds.
XX
KW   .
XX
OS   Citrus tristeza virus
OC   Viruses; Riboviria; Closteroviridae; Closterovirus.
XX
RN   [1]
RP   1-672
RX   DOI; 10.3389/fmicb.2013.00366.
RX   PUBMED; 24339822.
RA   Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T., Yokomi R.K., Lee R.F.,
RA   Folimonova S.Y., Krueger R.R., Bash J., Greer G., Diaz J., Serna R.,
RA   Vidalakis G.;
RT   "Past and future of a century old Citrus tristeza virus collection: a
RT   California citrus germplasm tale";
RL   Front Microbiol. 4:366-366(2013).
XX
RN   [2]
RP   1-672
RA   Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA   Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA   Serna R.S., Vidalakis G.;
RT   ;
RL   Submitted (28-MAR-2013) to the INSDC.
RL   Department of Plant Pathology and Microbiology, University of California,
RL   Riverside, 900 University Ave., Riverside, CA 92521, USA
XX
DR   MD5; 4576abea3779e98522f62ecc1a53685a.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNA Dragon v. 1.5.3
CC   Assembly Name         :: CTV-CP
CC   Coverage              :: 3
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..672
FT                   /organism="Citrus tristeza virus"
FT                   /lab_host="Citrus sinensis"
FT                   /isolate="SY553"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Riverside, California"
FT                   /isolation_source="originally from Meyer Lemon in Riverside
FT                   Citrus Research Center and Agricultural Experiment Station
FT                   ( PI 23028 & CRC 662). CRC 662 was introduced as plants
FT                   from USDA Plant Introduction Station Chico, California in
FT                   1917. The PI 23028 was introduced from China by F Meyer"
FT                   /collected_by="Chester Roistacher"
FT                   /collection_date="1960"
FT                   /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq:
FT                   cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814,
FT                   rev_seq: gatgaaactccaccatcccgata"
FT                   /note="SY553 is maintained in planta at the Citrus Clonal
FT                   Protection Program (CCPP), University of California,
FT                   Riverside; acronym: CTV; genotype: VT+T36"
FT                   /db_xref="taxon:12162"
FT   gene            1..672
FT                   /gene="CP"
FT   CDS             1..672
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="major coat protein"
FT                   /db_xref="GOA:Q8B3T3"
FT                   /db_xref="InterPro:IPR002679"
FT                   /db_xref="UniProtKB/TrEMBL:Q8B3T3"
FT                   /protein_id="AGM39420.1"
FT                   /translation="MDDETKKLKNKNKETKEGDDVVAAESSFSSVNLHIDPTLITMNDV
FT                   RQLSTQQNAALNRDLFLTLKGKHPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDATGIT
FT                   YTREGVEVDLSDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT                   LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADDVVVTNVRQLGKFNT
FT                   R"
XX
SQ   Sequence 672 BP; 198 A; 127 C; 166 G; 181 T; 0 other;
     atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacaaaaga aggcgacgat        60
     gttgttgctg ccgagtcttc tttcagttcc gtaaacttac acatcgatcc gactttgata       120
     acgatgaacg atgtgcgtca gttgagtacc caacagaacg ctgctttgaa cagagactta       180
     ttcctcactt tgaaagggaa gcatcctaac ttacccgata aagataaaga ctttcacata       240
     gctatgatgt tgtatcgttt agcagttaag agttcatcat tacaaagcga tgacgacgcc       300
     acgggtataa cgtacactcg ggagggtgtt gaagtggatt tgtctgacaa actttggact       360
     gacgtcgtgt ttaactctaa gggtattggt aaccgtacta acgcccttcg agtttggggt       420
     agaactaacg atgcccttta cttagctttt tgcagacaga atcgcaattt gagttatggc       480
     ggacgtccgc tagacgcagg gattccggcc gggtatcatt acttgtgtgc ggatttcttg       540
     actggagctg gtttgactga tttagaatgt gctgtgtaca tacaagctaa agaacaatta       600
     ttgaagaagc gaggggctga tgatgtcgta gttactaatg tcaggcagct tgggaaattc       660
     aacacacgtt ga                                                           672
//