ID   KC841804; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
XX
AC   KC841804;
XX
DT   29-MAY-2013 (Rel. 116, Created)
DT   15-MAY-2014 (Rel. 120, Last updated, Version 3)
XX
DE   Citrus tristeza virus isolate SY566 coat protein (CP) gene, complete cds.
XX
KW   .
XX
OS   Citrus tristeza virus
OC   Viruses; Riboviria; Closteroviridae; Closterovirus.
XX
RN   [1]
RP   1-672
RX   DOI; 10.3389/fmicb.2013.00366.
RX   PUBMED; 24339822.
RA   Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T., Yokomi R.K., Lee R.F.,
RA   Folimonova S.Y., Krueger R.R., Bash J., Greer G., Diaz J., Serna R.,
RA   Vidalakis G.;
RT   "Past and future of a century old Citrus tristeza virus collection: a
RT   California citrus germplasm tale";
RL   Front Microbiol. 4:366-366(2013).
XX
RN   [2]
RP   1-672
RA   Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA   Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA   Serna R.S., Vidalakis G.;
RT   ;
RL   Submitted (28-MAR-2013) to the INSDC.
RL   Department of Plant Pathology and Microbiology, University of California,
RL   Riverside, 900 University Ave., Riverside, CA 92521, USA
XX
DR   MD5; 81489bd6a2e9b66bc29c4e4cc662177f.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNA Dragon v. 1.5.3
CC   Assembly Name         :: CTV-CP
CC   Coverage              :: 3
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..672
FT                   /organism="Citrus tristeza virus"
FT                   /lab_host="Citrus sinensis"
FT                   /isolate="SY566"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Honolulu, Hawaii"
FT                   /isolation_source="originally from Kusaie Lime in Riverside
FT                   Citrus Research Center and Agricultural Experiment Station
FT                   (CRC 452). CRC 452 was received as budwood from Dr.
FT                   Webber's (#20), from Garrett Wilder, Honolulu in 1914"
FT                   /collected_by="Chester Roistacher"
FT                   /collection_date="1978"
FT                   /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq:
FT                   cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814,
FT                   rev_seq: gatgaaactccaccatcccgata"
FT                   /note="SY566 is maintained in planta at the Citrus Clonal
FT                   Protection Program (CCPP), University of California,
FT                   Riverside; acronym: CTV; genotype: VT"
FT                   /db_xref="taxon:12162"
FT   gene            1..672
FT                   /gene="CP"
FT   CDS             1..672
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="major coat protein"
FT                   /db_xref="GOA:R4V070"
FT                   /db_xref="InterPro:IPR002679"
FT                   /db_xref="UniProtKB/TrEMBL:R4V070"
FT                   /protein_id="AGM39401.1"
FT                   /translation="MDDETKKLKNKNKEAKDGDDVVAAESSFGSVNLHIDPTLIAMNDV
FT                   RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDSTGIT
FT                   YTREGVEVDLSDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT                   LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT                   R"
XX
SQ   Sequence 672 BP; 185 A; 121 C; 180 G; 186 T; 0 other;
     atggacgacg agacaaagaa attgaagaac aaaaacaagg aagcgaaaga tggcgacgat        60
     gttgttgcag cggagtcttc tttcggttct gtaaacttac acatcgatcc gactctgata       120
     gcgatgaacg atgtgcgtca gttgggtacc caacagaatg ccgctttgaa cagagatttg       180
     tttcttactt tgaaagggaa gtatcctaat ttgcctgata aggataagga ctttcacata       240
     gctatgatgt tgtatcgttt agcggttaag agttcatcat tgcaaagtga tgacgactct       300
     acgggtataa cgtacactcg ggagggcgtc gaagtggatt tgtctgacaa actttggact       360
     gacgtcgtgt ttaattctaa gggtatcggt aaccgtacta acgcccttcg agtctggggt       420
     aggactaacg atgcccttta tttagccttt tgtagacaga atcgcaattt gagttatggc       480
     ggacgtccgc tagatgcagg gattccggcc gggtatcatt acctgtgtgc agatttcttg       540
     actggagctg gcttgactga tttagagtgt gctgtgtaca tacaagctaa agaacaattg       600
     ttgaagaagc gaggggctga tgaagtcgta gttaccaatg tcaggcagct tgggaaattt       660
     aacacacgtt ga                                                           672
//