ID   KC841803; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
XX
AC   KC841803;
XX
DT   29-MAY-2013 (Rel. 116, Created)
DT   15-MAY-2014 (Rel. 120, Last updated, Version 3)
XX
DE   Citrus tristeza virus isolate SY565 coat protein (CP) gene, complete cds.
XX
KW   .
XX
OS   Citrus tristeza virus
OC   Viruses; Riboviria; Closteroviridae; Closterovirus.
XX
RN   [1]
RP   1-672
RX   DOI; 10.3389/fmicb.2013.00366.
RX   PUBMED; 24339822.
RA   Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T., Yokomi R.K., Lee R.F.,
RA   Folimonova S.Y., Krueger R.R., Bash J., Greer G., Diaz J., Serna R.,
RA   Vidalakis G.;
RT   "Past and future of a century old Citrus tristeza virus collection: a
RT   California citrus germplasm tale";
RL   Front Microbiol. 4:366-366(2013).
XX
RN   [2]
RP   1-672
RA   Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA   Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA   Serna R.S., Vidalakis G.;
RT   ;
RL   Submitted (28-MAR-2013) to the INSDC.
RL   Department of Plant Pathology and Microbiology, University of California,
RL   Riverside, 900 University Ave., Riverside, CA 92521, USA
XX
DR   MD5; 07de160f1da2da45148e76fb9b087b45.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNA Dragon v. 1.5.3
CC   Assembly Name         :: CTV-CP
CC   Coverage              :: 3
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..672
FT                   /organism="Citrus tristeza virus"
FT                   /lab_host="Citrus sinensis"
FT                   /isolate="SY565"
FT                   /mol_type="genomic RNA"
FT                   /country="Australia"
FT                   /isolation_source="originally from Parson's Special
FT                   Mandarin in Riverside Citrus Research Center and
FT                   Agricultural Experiment Station (CRC 300). CRC 300 was
FT                   received from Dr. Fawcett's Florida collection (#106) in
FT                   1914"
FT                   /collected_by="Chester Roistacher"
FT                   /collection_date="1978"
FT                   /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq:
FT                   cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814,
FT                   rev_seq: gatgaaactccaccatcccgata"
FT                   /note="SY565 is maintained in planta at the Citrus Clonal
FT                   Protection Program (CCPP), University of California,
FT                   Riverside; acronym: CTV; genotype: VT"
FT                   /db_xref="taxon:12162"
FT   gene            1..672
FT                   /gene="CP"
FT   CDS             1..672
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="major coat protein"
FT                   /db_xref="GOA:B8QIY3"
FT                   /db_xref="InterPro:IPR002679"
FT                   /db_xref="UniProtKB/TrEMBL:B8QIY3"
FT                   /protein_id="AGM39400.1"
FT                   /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSANLHIDPTLITMNDV
FT                   RQLGTQQNAALNRDLFLTLKGKYPSLSDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT
FT                   YTREGVEVDLSDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT                   LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT                   R"
XX
SQ   Sequence 672 BP; 191 A; 120 C; 177 G; 184 T; 0 other;
     atggacgacg agacaaagaa attgaagaac aaaaacaagg agacgaaaga aggcgacgat        60
     gttgttgcag cagagtcttc tttcggttcc gcgaatttac acatcgatcc gactctgata       120
     acgatgaacg atgtgcgtca gttgggaacc caacagaacg ctgctttgaa cagagatttg       180
     tttcttactc tgaaagggaa gtatcctagc ttgtctgaca aggataagga cttccacata       240
     gctatgatgt tatatcgttt agcggttaag agttcatcgt tgcaaagtga tgatgacacc       300
     acgggcataa catatactcg agagggtgtt gaagtggatt tgtctgacaa gctttggact       360
     gacgtcgtgt ttaactctaa gggtattggt aaccgtacta atgcccttcg agtctggggt       420
     aggactaacg atgcccttta tttagctttc tgtagacaga atcgcaattt gagttatggt       480
     ggacgtccgc tagatgcagg gattccggct gggtatcatt acctatgtgc agatttcttg       540
     accggagctg gcttgactga tttagaatgt gctgtgtaca tacaagctaa ggaacaattg       600
     ttaaagaagc gaggggctga tgaagtcgta gttactaatg tcaggcagct tgggaaattt       660
     aacacacgtt ga                                                           672
//