ID   KC841800; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
XX
AC   KC841800;
XX
DT   29-MAY-2013 (Rel. 116, Created)
DT   15-MAY-2014 (Rel. 120, Last updated, Version 3)
XX
DE   Citrus tristeza virus isolate SY555 coat protein (CP) gene, complete cds.
XX
KW   .
XX
OS   Citrus tristeza virus
OC   Viruses; Riboviria; Closteroviridae; Closterovirus.
XX
RN   [1]
RP   1-672
RX   DOI; 10.3389/fmicb.2013.00366.
RX   PUBMED; 24339822.
RA   Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T., Yokomi R.K., Lee R.F.,
RA   Folimonova S.Y., Krueger R.R., Bash J., Greer G., Diaz J., Serna R.,
RA   Vidalakis G.;
RT   "Past and future of a century old Citrus tristeza virus collection: a
RT   California citrus germplasm tale";
RL   Front Microbiol. 4:366-366(2013).
XX
RN   [2]
RP   1-672
RA   Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA   Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA   Serna R.S., Vidalakis G.;
RT   ;
RL   Submitted (28-MAR-2013) to the INSDC.
RL   Department of Plant Pathology and Microbiology, University of California,
RL   Riverside, 900 University Ave., Riverside, CA 92521, USA
XX
DR   MD5; 3aa21f5b4a51c6b567749c3cf1f98bdd.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNA Dragon v. 1.5.3
CC   Assembly Name         :: CTV-CP
CC   Coverage              :: 3
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..672
FT                   /organism="Citrus tristeza virus"
FT                   /lab_host="Citrus sinensis"
FT                   /isolate="SY555"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Riverside, California"
FT                   /isolation_source="originally from Tahitian Pummelo in
FT                   Riverside Citrus Research Center and Agricultural
FT                   Experiment Station"
FT                   /collected_by="Chester Roistacher"
FT                   /collection_date="1971"
FT                   /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq:
FT                   cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814,
FT                   rev_seq: gatgaaactccaccatcccgata"
FT                   /note="SY555 is maintained in planta at the Citrus Clonal
FT                   Protection Program (CCPP), University of California,
FT                   Riverside; acronym: CTV; genotype: VT"
FT                   /db_xref="taxon:12162"
FT   gene            1..672
FT                   /gene="CP"
FT   CDS             1..672
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="major coat protein"
FT                   /db_xref="GOA:F8KUP5"
FT                   /db_xref="InterPro:IPR002679"
FT                   /db_xref="UniProtKB/TrEMBL:F8KUP5"
FT                   /protein_id="AGM39397.1"
FT                   /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSVNLHIDPTLIAMNDV
FT                   RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHLAMMLYRLAVKSSSLQSDDDTTGVT
FT                   YTREGVEVELSDKLWTDIVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT                   LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT                   R"
XX
SQ   Sequence 672 BP; 199 A; 123 C; 170 G; 180 T; 0 other;
     atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacgaaaga aggcgacgat        60
     gttgttgcag ctgagtcttc tttcggttcc gtaaacttac acatcgatcc gactctgata       120
     gcgatgaacg atgtgcgtca gttgggtacc caacagaatg ctgctttgaa tagagatttg       180
     tttcttacct tgaaagggaa gtatcctaac ttacctgaca aagataaaga ctttcactta       240
     gctatgatgt tatatcgttt agcagttaag agttcatcat tacaaagcga cgatgacacc       300
     acgggtgtga cgtacactcg ggaaggtgtt gaagtggaat tgtctgacaa actttggaca       360
     gacatcgtgt ttaactctaa gggtattggt aaccgtacta acgcccttcg agtctggggt       420
     agaactaacg atgcccttta tttggctttt tgtagacaga atcgcaactt gagttatggt       480
     ggacgtccgt tagatgcagg aattccagcc gggtatcact acctgtgtgc agatttcttg       540
     accggagctg gattgactga tttagaatgt gcagtgtaca tacaagctaa agagcaattg       600
     ttgaagaagc gaggggctga tgaggtcgta gttaccaatg tcaggcagct tgggaaattc       660
     aacacacgtt ga                                                           672
//