ID   KC841798; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
XX
AC   KC841798;
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DT   29-MAY-2013 (Rel. 116, Created)
DT   15-MAY-2014 (Rel. 120, Last updated, Version 3)
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DE   Citrus tristeza virus isolate SY550 coat protein (CP) gene, complete cds.
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KW   .
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OS   Citrus tristeza virus
OC   Viruses; Riboviria; Closteroviridae; Closterovirus.
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RN   [1]
RP   1-672
RX   DOI; 10.3389/fmicb.2013.00366.
RX   PUBMED; 24339822.
RA   Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T., Yokomi R.K., Lee R.F.,
RA   Folimonova S.Y., Krueger R.R., Bash J., Greer G., Diaz J., Serna R.,
RA   Vidalakis G.;
RT   "Past and future of a century old Citrus tristeza virus collection: a
RT   California citrus germplasm tale";
RL   Front Microbiol. 4:366-366(2013).
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RN   [2]
RP   1-672
RA   Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA   Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA   Serna R.S., Vidalakis G.;
RT   ;
RL   Submitted (28-MAR-2013) to the INSDC.
RL   Department of Plant Pathology and Microbiology, University of California,
RL   Riverside, 900 University Ave., Riverside, CA 92521, USA
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DR   MD5; bd6d12713eb4e5f819d54e227c1955be.
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNA Dragon v. 1.5.3
CC   Assembly Name         :: CTV-CP
CC   Coverage              :: 3
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..672
FT                   /organism="Citrus tristeza virus"
FT                   /lab_host="Citrus sinensis"
FT                   /isolate="SY550"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /isolation_source="originally from Hung-Kat mandarin in
FT                   Riverside Citrus Research Center and Agricultural
FT                   Experiment Station"
FT                   /collected_by="Chester Roistacher"
FT                   /collection_date="1963"
FT                   /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq:
FT                   cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814,
FT                   rev_seq: gatgaaactccaccatcccgata"
FT                   /note="SY550 is maintained in planta at the Citrus Clonal
FT                   Protection Program (CCPP), University of California,
FT                   Riverside; acronym: CTV; genotype: VT"
FT                   /db_xref="taxon:12162"
FT   gene            1..672
FT                   /gene="CP"
FT   CDS             1..672
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="major coat protein"
FT                   /db_xref="GOA:R4VII3"
FT                   /db_xref="InterPro:IPR002679"
FT                   /db_xref="UniProtKB/TrEMBL:R4VII3"
FT                   /protein_id="AGM39395.1"
FT                   /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSVNLHIDPTLIAMNDV
FT                   RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHLAMMLYRLAVKSSSLQSDDDTTGMT
FT                   YTREGVEVELSDKLWTDVVFNSKGIGNRTNALRVWGRSNDALYLAFCRQNRNLSYGGRP
FT                   LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVFTNVGQLEKFNT
FT                   R"
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SQ   Sequence 672 BP; 199 A; 125 C; 167 G; 181 T; 0 other;
     atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacgaaaga aggtgacgat        60
     gttgttgcag ctgagtcttc tttcggctcc gtaaacttac acatcgaccc gactctgata       120
     gcgatgaacg atgtgcgtca gttgggtacc caacagaatg ctgctttgaa tagagatttg       180
     tttcttacct tgaaagggaa gtatcctaac ttacctgaca aagacaaaga ctttcactta       240
     gctatgatgt tatatcgttt ggcagttaag agttcatcat tacaaagcga cgatgatacc       300
     acgggtatga cgtacactcg ggaaggtgtt gaagtggaat tgtctgacaa actttggaca       360
     gacgtcgtgt ttaactctaa gggtattggt aaccgtacta acgcccttcg agtctggggt       420
     agatctaacg atgcccttta tttggctttt tgtagacaga accgcaactt gagttatggt       480
     ggacgtccgt tagatgcagg aattccagcc gggtatcact acctgtgtgc agatttctta       540
     accggagctg gcttgaccga tttagaatgt gcagtgtaca tacaagctaa agagcaatta       600
     ttaaagaagc gaggggctga tgaggtcgta tttactaatg tcgggcagct tgagaaattt       660
     aacacacgtt ga                                                           672
//