ID   KC767660; SV 1; linear; genomic RNA; STD; VRL; 1977 BP.
XX
AC   KC767660;
XX
DT   27-JUN-2013 (Rel. 117, Created)
DT   27-JUN-2013 (Rel. 117, Last updated, Version 1)
XX
DE   Alfalfa mosaic virus isolate 175 movement protein and coat protein genes,
DE   complete cds.
XX
KW   .
XX
OS   Alfalfa mosaic virus
OC   Viruses; Riboviria; Bromoviridae; Alfamovirus.
XX
RN   [1]
RP   1-1977
RA   Cowell S.J., Pearson M.N., Cohen D.;
RT   "RNA 3 sequence of Alfalfa mosaic virus isolated from Actinidia species";
RL   Unpublished.
XX
RN   [2]
RP   1-1977
RA   Cowell S.J., Pearson M.N., Cohen D.;
RT   ;
RL   Submitted (12-MAR-2013) to the INSDC.
RL   School of Biological Sciences, The University of Auckland, 3a Symonds
RL   Street, Auckland 1010, New Zealand
XX
DR   MD5; d2b5a5f64c33d682f6ff55631a24219b.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: Geneious Pro v. 5.3.5
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1977
FT                   /organism="Alfalfa mosaic virus"
FT                   /segment="RNA3"
FT                   /host="Actinidia guilinensis"
FT                   /isolate="175"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand"
FT                   /collection_date="01-Aug-2010"
FT                   /db_xref="taxon:12321"
FT   5'UTR           <1..190
FT   CDS             191..1093
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:R9XMV9"
FT                   /db_xref="InterPro:IPR002538"
FT                   /db_xref="UniProtKB/TrEMBL:R9XMV9"
FT                   /protein_id="AGO15285.1"
FT                   /translation="MENTKTNASGSGISSSSSFSVSYAEEMLLADEVSKMNSMSILGPN
FT                   QLKLCTQLVLSNGAAPVVLSLVSKEKKSILNRMLPIIGQRMYVHHSAIYLPYMPNILKS
FT                   SSGSITLKLFNEATGELVDVDTDHDATQACIFAGRYPRSILAKDAAKGHDLKLVVHAVA
FT                   STNANSAVGVLYPIWEDELSRKQILERGADFLKFPIAETEPVRDLLNAGKLTDFVLDRT
FT                   RLGVGSKKDPNPVLLEPRAKVTGKAKTVFIPEGLGVPNTIVNGITPTVRIDAGSPKGLG
FT                   VPKGFTYESFIKDEILPDH"
FT   CDS             1142..1807
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:R9XN74"
FT                   /db_xref="UniProtKB/TrEMBL:R9XN74"
FT                   /protein_id="AGO15286.1"
FT                   /translation="MSSSQKKAGGKAGKPTKRSQNYAALRKAQLPKPPALKVPVAKPTN
FT                   TILPQTGCVWQSLGTPLSLSSSNGLGARFLYSFLKDFVAPRILEEDLIFRMVFSVTPSH
FT                   AGSFCLTDDVTTEDGRAVAHGNPMQEFPHGAFHANEKFGFELVFTAPTHAGMQNQNFKH
FT                   SYAVALCLDFDALPEGSKNPSYRFNEVWVERKAFPRAGPLRSLITVGLFDDADDLDRQ"
FT   3'UTR           1808..>1977
XX
SQ   Sequence 1977 BP; 523 A; 432 C; 449 G; 573 T; 0 other;
     acagtgtaat tcgtactttt cgtaagtaag tttctgtaaa agcgtttctt gttttaactt        60
     ggcctaacac gtaattcgta ctcttcgtga gtaagttgtg ttagccatat ctatcccttt       120
     ttttttgtca aatttaaaaa gaaaatcatt cccattcgcg taattcgtac tcttcgtgag       180
     taagttgcaa atggagaata caaaaacaaa tgcctcgggt tctggaatat cttcttcctc       240
     cagcttttca gtgtcttatg ctgaggaaat gttactagct gatgaagttt caaaaatgaa       300
     ctcaatgtcg atcctgggtc ccaatcagct aaagctctgc actcagttgg tgctgtctaa       360
     tggagcagca cctgtagttc taagccttgt gtcgaaggaa aagaaatcga ttttaaatcg       420
     aatgcttcca ataatcggac agaggatgta tgtccatcac tcggctattt acctccctta       480
     tatgccaaat atactaaaaa gttcttcagg gagcatcacc ttgaaacttt ttaatgaggc       540
     tacgggagag ttagtggatg ttgacaccga ccatgatgct acccaagcat gtatatttgc       600
     tggacgttac ccccggagta ttctggcgaa agatgctgcg aaaggacatg acttaaaatt       660
     agtcgtccac gcagttgctt cgaccaatgc gaactctgct gtcggtgttc tataccccat       720
     ctgggaagat gagttaagca gaaagcagat cctcgaaagg ggtgccgatt ttctaaagtt       780
     tccaattgct gagaccgaac cagtccgcga tctcttaaat gctggaaaat tgacggactt       840
     cgttcttgat aggacgaggt tgggcgtggg atcaaagaaa gatcctaatc cggttctttt       900
     ggaaccacga gccaaggtta ccgggaaagc aaagacagtt tttattcccg aaggccttgg       960
     tgttcctaat accattgtaa atggtataac accgacggtg cgaatagatg ccggttctcc      1020
     aaaaggtctt ggagttccga aagggtttac gtatgaaagt tttattaaag atgaaatatt      1080
     acctgatcat tgatcggtaa tgggccgttt tatttttaat tttctttcaa atacttccat      1140
     catgagttct tcacaaaaga aagctggtgg gaaagctggt aaacctacta aacgttctca      1200
     gaactatgct gctctacgca aagctcaact gccgaagcct ccggcgttga aagtcccggt      1260
     tgcaaaaccg acgaatacta tactgccaca gacgggctgc gtgtggcaaa gcctcgggac      1320
     ccctctgagt ctgagctctt caaatgggct cggtgcgaga ttcctctaca gttttctgaa      1380
     ggatttcgta gctcctcgaa tcctcgaaga ggatttgatt ttcaggatgg tgttttctgt      1440
     aacaccgtcc catgccggct ctttttgtct cactgatgac gtgacgactg aggatggtag      1500
     ggccgttgcg catggtaacc ccatgcaaga atttcctcat ggcgcttttc acgccaatga      1560
     gaagttcggg tttgagttgg tcttcacagc tcctacccat gcgggaatgc aaaatcaaaa      1620
     tttcaaacat tcctatgccg tagccctttg tttggacttc gacgctctgc ctgagggatc      1680
     taagaatccc tcataccgat tcaacgaagt ttgggtcgag agaaaggcgt ttccgcgagc      1740
     agggcccctc cgcagtttga ttactgtggg gctgttcgac gatgctgacg atcttgaccg      1800
     tcaatgatgt accccattaa tttgggatgc taaagtcatt taatgctgac ctccactggg      1860
     tggattaagg tcaaggtatg aagtcctatt cgctcctgat aggaacgact tcatattgct      1920
     tatatatgtg ctaacgcaca tatataaatg ctcatgcaaa actgcatgaa tgcccct         1977
//