ID KC713784; SV 1; circular; genomic DNA; STD; VRL; 2760 BP. XX AC KC713784; XX DT 17-JUN-2013 (Rel. 117, Created) DT 17-JUN-2013 (Rel. 117, Last updated, Version 1) XX DE Tomato leaf curl virus strain MPT [Coimbatore; Tamil Nadu] segment DNA-A, DE complete sequence. XX KW . XX OS Tomato leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2760 RA Deivamani M., Ganapathy T., Rabindran R., Nagarajan P.; RT "The molecular characterization of Tomato leaf curl virus in different RT regions of Tamil Nadu, India"; RL Unpublished. XX RN [2] RP 1-2760 RA Deivamani M., Ganapathy T., Rabindran R., Nagarajan P.; RT ; RL Submitted (04-MAR-2013) to the INSDC. RL Plant Pathology, Tamil Nadu Agricultural University, Lawely Road, RL Coimbatore, Tamil Nadu 641003, India XX DR MD5; 020ab12394f70ad4d98312ffe5853ac5. XX CC ##Assembly-Data-START## CC Assembly Method :: Gene Runner v. 4.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2760 FT /organism="Tomato leaf curl virus" FT /segment="DNA-A" FT /host="tomato" FT /strain="MPT [Coimbatore; Tamil Nadu]" FT /mol_type="genomic DNA" FT /country="India:Tamil Nadu, Coimbatore" FT /isolation_source="leaves" FT /collected_by="M. Deivamani" FT /collection_date="05-Feb-2012" FT /db_xref="taxon:28350" FT gene 144..491 FT /gene="AV2" FT CDS 144..491 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:R9W1X8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:R9W1X8" FT /protein_id="AGN90713.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHSRFEGTPPSQLRQPICEPCCCPHCPRHQSKGMGEQAHVP FT EAQNVQDVQKP" FT gene complement(295..612) FT /gene="AC5" FT CDS complement(295..612) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:R9VY35" FT /protein_id="AGN90714.1" FT /translation="MGQPNTPSNIRKTNNLTHVTNIMSCIKRLHLTWAFTSLRNIRASV FT HPVHSGLPVHGPVRPCLCFGDADNGGSSTVHIWAVEVETAAYLRSGSGNDYICWSLRHN FT F" FT gene 304..1074 FT /gene="AV1" FT CDS 304..1074 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:R9W2K1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:R9W2K1" FT /protein_id="AGN90715.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVNRAAAPIVRVTKAKAWA FT NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDARHDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDENIKTKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNEP FT STATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKLRSYFYDSVSN" FT gene complement(1071..1475) FT /gene="AC3" FT CDS complement(1071..1475) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:R9W064" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:R9W064" FT /protein_id="AGN90716.1" FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFLMNQDI FT ITVQIQFNHNLRKALGIHKCFLAFRIWMTSRLPTGRFLRVFKTQVLKYLNNLGVISINN FT VIRSVDHVLWNVLHHVVYVNQSYSIKFNLY" FT gene complement(1216..1620) FT /gene="AC2" FT CDS complement(1216..1620) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /db_xref="GOA:R9VYQ5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:R9VYQ5" FT /protein_id="AGN90717.1" FT /translation="MRSSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALA FT CHNHGFTHRGTHHCSSSREWRVYLGDSKSPIFQDNRASQPAIPDESRHHHRSDTVQSQP FT EESVGDTQMFPSLPNLDDLTASDWSFLKGL" FT gene complement(1523..2608) FT /gene="AC1" FT CDS complement(1523..2608) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiation protein" FT /db_xref="GOA:R9W1Y2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:R9W1Y2" FT /protein_id="AGN90718.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEKALSQLLNLQTPTSKKFIR FT ICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYM FT EKDGDVVDHGVFQIDGRSARGGCQSANDAYAEAINAGSKIEALNILREKAPKDYVLQFH FT NLNSNLDRIFTPPIEVYVSPFSSSSFDQVPEELEEWAAENIVSAAARPIRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLNLSQKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNIKYQKPVQIKGGIPTIFLCNPRPDSSYKEFLDEEKNSKLKDWALKNAIFVTLEGPL FT YSGSNQSATQASQEGDQTSTS" FT gene complement(2158..2451) FT /gene="AC4" FT CDS complement(2158..2451) FT /codon_start=1 FT /gene="AC4" FT /product="PTGS suppressor" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:R9VY38" FT /protein_id="AGN90719.1" FT /translation="MGLLTCMCSSSSKESSSAKTIDSSTSHPQPGQHISIRTFRELRAQ FT AMSNPTWRKTETSLIMEFSKSMDDQLEEVANLPTTHMPRQSTQGPKLRPSIY" XX SQ Sequence 2760 BP; 748 A; 540 C; 620 G; 852 T; 0 other; accggatggc cgcgaatttt tttgtgggcc cttcaacgta ctaactgaca aggacatgcg 60 aaccaatcat atcacgcgct caaaggctaa ttgttttgtg gtcccctatt taaacttgga 120 caccaagtaa agtacatcgc actatgtggg atccattgtt aaacgagttt cccgaaaccg 180 ttcacggctt tagatgtatg ttagcagtta aatatcttca gttagtagaa aagacttatt 240 cccctgacac attaggttac gatttaatta gggatttaat ttcagttatt agggctagaa 300 attatgtcga agcgaccagc agatataatc atttccactc ccgcttcgaa ggtacgccgc 360 cgtctcaact tcgacagccc atatgtgaac cgtgctgctg cccccattgt ccgcgtcacc 420 aaagcaaagg catgggcgaa caggcccatg taccggaagc ccagaatgta caggatgtac 480 agaagccctg atgttcctaa gggatgtgaa ggcccatgta aggtgcagtc ttttgatgca 540 agacatgata ttggtcacat gggtaaggtt atttgtcttt ctgatgttac taggggtatt 600 gggctgaccc atcgagtagg gaaacgtttc tgcgtgaagt cattgtattt tgttggcaaa 660 atatggatgg acgagaacat caagactaaa aaccatacga atactgttat gttttggatc 720 gttagagata ggcgtccttc aggaacccca aatgatttcc aacaagtgtt caatgtttat 780 gataatgagc cctctacggc tactgtaaag aacgaccagc gtgatcgatt tcaggttttg 840 aggaggttcc aggcaacagt aacaggtggt caatatgctg ctaaggagca ggctataatt 900 aggaagtttt atcgtgttaa caattatgtg gtttataatc atcaagaagc tgggaagtat 960 gagaatcaca ctgagaatgc tttgttgttg tatatggcat gtactcatgc ctctaacccc 1020 gtgtatgcta ctttgaagtt acggagttac ttctacgatt ctgtatcaaa ttaataaaga 1080 ttgaatttta ttgaatatga ttggtttaca tatacaacgt gatgtaatac attccataat 1140 acatgatcaa ctgatctaat tacattgtta atactgataa ctcctaagtt atttaaatac 1200 ttaagaactt gggtcttaaa gacccttaag aaacgaccag tcggaagccg tgaggtcatc 1260 cagattcgga aggctaggaa acatttgtgt atccccaacg ctttcctcag gttgtgattg 1320 aactgtatct gaacggtgat gatgtcttga ttcatcagga atggccggtt gtgatgctct 1380 gttatcttga aatatagggg attttgaatc tcccagataa acacgccatt ctctgcttga 1440 gctgcagtga tgagttcccc tgtgcgtgaa tccatggttg tggcaggcta atgctatgaa 1500 gtaagaacag ccgcaaggta gatcaactcg tcgacgtctg gtccccttct tggctagcct 1560 gtgttgcact ttgattggaa cctgagtaga gtgggccttc gagggtgacg aagatcgcat 1620 tctttaaagc ccagtcttta agtttagaat tcttttcttc atccaagaat tctttatagc 1680 tggagtcggg tcttggattg cagaggaaga ttgtgggaat tccgccttta atttgaactg 1740 gcttctggta ctttatattt gattgccagt ccctttgggc ccccatgaat tccttaaagt 1800 gctttaggta gtgggggtct acgtcatcaa ttacgttata ccaggcatca ttactgtata 1860 ccttttggct aaggtttaga tgaccacata gataattatg tggtccaagt gatctggccc 1920 acatcgtctt cccagttcta ctatcaccct caatcactat acttatgggc cttataggcc 1980 gcgcagcggc actgacgatg ttctcggcag cccactcctc aagttcttct ggaacttgat 2040 caaaggaaga agaagaaaaa ggagaaacat aaacctctat tggaggtgta aaaatcctat 2100 ctaaattaga atttaaattg tgaaattgta aaacataatc tttgggagcc ttttccctta 2160 atatattgag ggcctcaatt ttggaccctg cgttgattgc ctcggcatat gcgtcgttgg 2220 cagattggca acctcctcta gctgatcgtc catcgatttg gaaaactcca tgatcaacga 2280 cgtctccgtc tttctccatg taggatttga catcgcttga gctcttagct ccctgaatgt 2340 tcggatggaa atgtgctgac ctggttgggg atgtgaggtc gaagaatcta ttgtttttgc 2400 actggaactt tccttcgaac tggatgagca catgcaagtg aggagtccca tcttcgtgaa 2460 gctctctgca aattctaata aattttttgg aagtgggtgt ttgtagattt aataattggg 2520 aaagtgcctt ttctttagtt agagagcact tgggataagt gagaaaataa ttttttgcat 2580 ttattttaaa gcgattgggg gctgccatgt tgacttggtc aattggagtc tctcaactct 2640 ttctatgtat cggtgtactg gagtcctata tatatggaga ctctaattgc ataaatgtaa 2700 tatatgaact ttactttgaa attcaaaatc ctacgctaaa gcggccatcc gtataatatt 2760 //