ID KC706662; SV 1; circular; genomic DNA; STD; VRL; 2506 BP. XX AC KC706662; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato yellow vein streak virus isolate BR:Pda3:05 segment DNA-B, complete DE sequence. XX KW . XX OS Tomato yellow vein streak virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2506 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2506 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (26-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; 7135d4cc47a44e999c23c07a8cfcd018. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2506 FT /organism="Tomato yellow vein streak virus" FT /segment="DNA-B" FT /host="Solanum lycopersicum" FT /isolate="BR:Pda3:05" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2005" FT /db_xref="taxon:55216" FT CDS 339..1109 FT /codon_start=1 FT /product="nuclear shuttle protein" FT /note="NSP" FT /db_xref="GOA:M4QKC4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:M4QKC4" FT /protein_id="AGH30120.1" FT /translation="MSPTSYRRGWSFAQRRGYSRKYLFKRPYYFKRTDGKHRSGNSNQV FT NEYIKLSQQRIHENQFGPEFVMGHNTAISTFITFPSLCKTEPGRSRAYIKLKRLRFKGT FT VKIERVHADVTMDGIIPKIEGVFSMVVVVDRKPHLSSSGCLHTFDELFGARIHSHGNLA FT VTPSLKERFYIRHVWKKVISVEKDSMMVDLEGTTSVSNKRFNCWSAFKDLDRDSCNGVY FT ANISKNALLVYYCWMSDTMSTASSFVSFDLDYVG" FT CDS complement(1273..2154) FT /codon_start=1 FT /product="movement protein" FT /note="MP" FT /db_xref="GOA:M4QMN2" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:M4QMN2" FT /protein_id="AGH30121.1" FT /translation="MDSQVVCPPNAFNYIESRRDEYQLSHDLTEIILQFPSKATQLSAR FT LNRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTENESLQASWTFPIRCNIDLHYF FT SSSFFSLKDPIPWKLYYKVSDSNVHQMTHFAKFKGKLKLSTAKHSVDIPFRAPTVKIMS FT KQFTVNDIDFSHVGYGKWERKLIRSASTSKFGLHGPIELNPGESWATRSTIETTQLEAQ FT SDLGEALHPYKDLNRLGTAILDPGDSASIIGAQRTQSNITLSMAQLNDLVRSTVQECIK FT SNCIPPQPKSLK" XX SQ Sequence 2506 BP; 739 A; 393 C; 530 G; 844 T; 0 other; accggatggc cgcgcgattt ttttttggtg gacccattct gaaagtaatt gagcgcattt 60 ttgacgtccg cgaattgagt tgagcgcaat atttgagttc cgaaaatata gttagtggag 120 taactttaat ttgaaataaa ttactgcttt tacggtaacc aatcagcatg cgactcagga 180 gcctatttat ttattacatt tatgtcagtg tcaaggtata cggtattctt cacgtggacc 240 aattaattgt tcgctatgga gtctaactaa ttaatatatg aagtgatgat ttttttatat 300 aaattccgta tatattgtga tagatatgat atcgcatcat gtctcctact agctatagac 360 gtggttggtc gtttgctcaa cgacgaggtt attctcgtaa atatttgttc aaacgtcctt 420 attattttaa acgtacagat gggaaacacc gatcgggtaa ctctaatcag gtcaatgagt 480 atattaagtt gtcgcaacag cgtatacatg agaaccagtt tggtccggaa tttgtaatgg 540 gtcataatac agcaatatcg acttttatta cttttcctag tctatgtaaa actgaaccgg 600 gcagatccag ggcatatatt aagttgaaac gtttacgttt caaaggtacc gtcaagattg 660 agcgtgttca tgctgatgtg actatggatg gtataatacc aaagattgaa ggcgtatttt 720 ctatggttgt cgttgttgat cgtaaacccc atttgagttc atctggttgt ctgcatacat 780 ttgatgagct ctttggtgca cggatccaca gtcatggcaa tttggctgta actccatctt 840 tgaaagagcg tttttacata cgccacgttt ggaagaaagt aatatctgtt gagaaggaca 900 gtatgatggt tgatcttgaa ggaacgacat cagtgagtaa taagcgtttt aattgttggt 960 ctgcttttaa agatcttgat cgtgattcat gtaatggtgt ttatgcgaat ataagcaaga 1020 acgccctttt agtttattac tgttggatgt cggatacgat gtctacagcg tcatcatttg 1080 tatcgttcga tcttgattat gttggttaaa aattaaaata ttaatgtatt tatacttaca 1140 tgagaaaata aatcatttaa gaaaacgtga gaaaataatc atttaagcaa acgtaatcac 1200 ataatataat tataattact gaaatattgg ctgcgcagct gcatgcaaaa aaaaatattg 1260 gcaacttgat atttacttca atgatttggg ttgtggagga atacagttag atttaataca 1320 ttcttggact gttgacctaa caagatcgtt taattgggcc attgacagcg tgatgttgga 1380 ttgcgttctt tgggccccaa ttattgaagc cgaatcacct ggatctaata tggcagttcc 1440 tagcctattt agatctttgt atggatgtaa cgcctcccct aggtctgatt gggcttctaa 1500 ttgggtcgtc tctattgtac tccttgtggc ccatgactct cctggattta gttctattgg 1560 gccatgaagc ccaaatttag aagttgatgc cgatcttatc aattttctct cccactttcc 1620 ataacctaca tgagagaagt cgatgtcatt gacggtaaat tgtttggaca taatcttcac 1680 tgtcggtgcc ctgaaaggta tatcaaccga atgttttgcc gttgatagct tcaattttcc 1740 tttgaatttt gcgaagtggg tcatctgatg aacgtttgag tcagaaacct tataatatag 1800 cttccatgga attgggtctt tgagtgagaa aaatgatgac gagaaatagt ggaggtctat 1860 gttgcacctg attggaaaag tccatgacgc ctgtaaggat tcattttcag tcatcctctt 1920 gtcatgaatc tccacaatta ctgaaccagt tgcgttgatt ggtacctgtt gtctatattc 1980 aatgacgcaa tgatcaatct tcatacagct tcgatttagt cttgcactta attgagttgc 2040 ttttgatgga aattgcaata tgatttcggt aaggtcatga gatagttgat attcgtcacg 2100 acgagattct atataattaa aggcgttggg tgggcaaact acttgagagt ccatatatat 2160 tacaagattg aataagtgta gagaataatt tagaaaaaga aaaggaaaca gtagtagtga 2220 tagataagat gattgaatgg atgtgatatt atacagaatt gtcgatcctt atatagactc 2280 ttaactggtt atggataatt tggttaaaca atactgagta tacttactaa ataagtttat 2340 aaagttatgg tgaaaagctt taatggtggt atttatgtaa ataaggaagt gagacccgat 2400 agctctcctt caaacttggc gaaatgaatt ggggaatggg tctcaatata tagtagagtc 2460 cattatagaa tataattgcc acgtggcggc catccgatat aatatt 2506 //