ID KC706633; SV 1; circular; genomic DNA; STD; VRL; 2560 BP. XX AC KC706633; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato yellow vein streak virus isolate BR:Pda2:05 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato yellow vein streak virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2560 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2560 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (26-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; 0f6472ee133059f520530224ef1d16e8. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2560 FT /organism="Tomato yellow vein streak virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Pda2:05" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2005" FT /db_xref="taxon:55216" FT CDS 155..898 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:M4QX73" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:M4QX73" FT /protein_id="AGH29996.1" FT /translation="MPKRDAPWRIVAGTTKVSRSSNYSPRGGIPKRDAWVNRPMYRKPR FT IYRTLRGPDVPKGCEGPCKVQSYEQRHDISHLGKVMCISDVTRGNGITHRVGKRFCVKS FT VYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDL FT RDRYQVIHRFNAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYM FT ACTHASNPVYATLKIRIYFYDSISN" FT CDS complement(895..1293) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QP37" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QP37" FT /protein_id="AGH29998.1" FT /translation="MDSRTAEPITVPQAENGVFIWEITNPLYFKITNVEDPSYTTTRIY FT HVQIRFNHNLRKALGLHKAFLNFQVWTTSLRASGMTYLTRFRYFVLLYLNQLGIISINN FT VIRAVRFATDKSYVSYVLENHSIKFKRY" FT CDS complement(1040..1429) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:M4QK32" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QK32" FT /protein_id="AGH30000.1" FT /translation="MLNSSSSTPPSIKPRHRAAKQKTTRRKRIDLNCGCSIYIHINCRN FT NGFTHRGTHHCASSREWRLYLGDYKSPLFQDNQRRGPILHNDQDIPCADTFQPQPAESV FT GSPQGISKFPSLDDIPESFWDDIFN" FT CDS complement(1350..2426) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QK96" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QK96" FT /protein_id="AGH29999.1" FT /translation="MPPPKRFTVNAKNFFLTYPHCSLTKEETLSQLQALKTPTNKKFIR FT VTREFHEDGEPHLHVLIQFEGKFKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDFIDFGNFQIDGRSARGGCQTANDTYAKVLNAENLSKALNILKEEQPRDYVLHLD FT KIQSHVQKIFAQAPAPWVPLFELSSFTHVPDEMQQWADEYFGRGAAARPERPISIIIEG FT DSRTGKTMWARALGSHNYLSGHLDFNSKVYSNEVEYNVIDDVTPQYLKMKHWKELIGSQ FT RDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKHENASLRAWTLHNAKFIFLN FT SPLYQATTQSSQTKNNPA" FT CDS complement(1985..2269) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QME3" FT /protein_id="AGH29997.1" FT /translation="MGNLISMCLFNSKANSNVRINDSSTWYPQQDQHISIQTFRELKAR FT PTSRPIWKKTETSLILEISRSMEDQQEEAAKLPMTLMQRFLTQKIYPRP" XX SQ Sequence 2560 BP; 688 A; 471 C; 590 G; 811 T; 0 other; accggatggc cgcgcgattt tttaagtggt cccactgtga gtgaccaatc agattgtgtc 60 ctgggcggtt atttatttcg aaatacttaa gcgctaagtt gttaaagttg tataaattag 120 acattcgtaa gtggtcgaca tactttaatt caaaatgcca aagcgagatg ccccatggcg 180 tatagtggca gggaccacga aagtatcccg ctcttctaat tattcacctc ggggaggtat 240 acccaagcgg gatgcttggg taaacaggcc catgtacagg aagcccagga tatatcgtac 300 gttgagaggg cctgatgttc ctaaagggtg tgaaggccca tgtaaagttc aatcctatga 360 gcaacgtcat gacatttctc atcttggcaa ggtgatgtgt atctctgatg tgacacgtgg 420 taatggtatt acacaccgtg ttggtaagcg tttttgtgtt aagtctgtgt acatattggg 480 taagatatgg atggacgaaa atattaaact gaagaaccat accaacagtg ttattttttg 540 gttagtgagg gatcgtagac cctatgggac acctatggat tttggtcagg tgtttaacat 600 gtttgataat gagcctagta ctgctacggt gaagaacgat cttcgtgatc gttatcaagt 660 cattcatcga ttcaatgcta aggttacggg tggacagtat gctagcaacg agcaagctct 720 tgttcggcgt ttctggaagg tcaataatca cgtggtttac aatcatcagg aagcagggaa 780 atatgagaat catacggaga atgctctgtt attgtatatg gcatgtacac atgcctctaa 840 tcccgtgtat gctactttga aaattcggat ctatttttat gattcgattt caaattaata 900 acgtttaaat tttattgaat gattttcgag tacataactt acataagatt tgtctgttgc 960 gaaacgaaca gctcttatta cattgttaat ggaaataata cctaattgat tcagatacaa 1020 taaaacgaaa tatctaaatc tagttaaata tgtcatccca gaagctctca gggatgtcgt 1080 ccagacttgg aaatttagaa atgccttgtg gagacccaac gctttccgca ggttgtggtt 1140 gaaacgtatc tgcacatggt atatcctggt cgttgtgtaa gatgggtcct cgacgttggt 1200 tatcttgaaa tagaggggat ttgtaatctc ccaaataaag acgccattct ctgcttgagg 1260 cacagtgatg ggttccgcgg tgcgtgaatc cattatttct acagttgatg tggatgtata 1320 tggagcagcc gcagtttagg tctatgcgtt tacgccgggt tgttttttgt ttggctgctc 1380 tgtgtcgtgg cttgatagag gggggagttg aggaagatga atttagcatt atgcagtgtc 1440 caagctctta gagatgcatt ttcatgtttg tcaaggaagt ctttataact agccccctct 1500 cctggattgc aaagcacgat tgatgggatc cctcctttaa tttgaaccgg ctttccgtac 1560 ttgcaattgc tttgccagtc acgctgggac ccaataagtt ctttccagtg cttcattttt 1620 agatattgtg gtgtgacatc atcaatgacg ttatactcca cttcatttga ataaacttta 1680 gaattaaaat ccaagtgtcc actcaaataa ttatgtgatc ctagtgcacg agcccacata 1740 gtcttccccg tcctggaatc accctcaatg atgatactaa taggtctttc cggccgcgca 1800 gcggcacccc ttccgaaata ctcatcagcc cattgctgca tctcatcagg aacgtgagta 1860 aaggaagata attcaaatag agggacccat ggggctggag cctgtgcaaa tattttttgg 1920 acatgtgatt gtattttatc caaatgaaga acataatctc taggttgttc ttcttttaat 1980 atatttaagg ccttggatag attttctgcg ttaagaacct ttgcataagt gtcattggca 2040 gtttggcagc ctcctcttgc tgatcttcca tcgatctgga aatttccaaa atcaatgaag 2100 tctccgtctt tttccatata ggtcttgacg tcggacgagc ttttagctcc ctgaatgttt 2160 ggatggaaat gtgctgatct tgttggggat accaagtcga agaatcgttg attctgacat 2220 ttgaatttgc cttcgaattg aataagcaca tggagatgag gttccccatc ttcgtgaaat 2280 tctctggtta cacgaataaa tttcttgttt gttggtgttt taagtgcctg taattgggaa 2340 agtgtttcct ctttggttaa tgaacaatga gggtatgtaa ggaagaaatt ttttgcattt 2400 acagtgaaac gctttggcgg tggcattgta gtaaataaga agatgagacc cgatagctct 2460 ccttcaaact tggcgaaatg aattggggaa tgggtctcaa tatatagtag agtccattat 2520 agaatataat tgccacgtgg cggccatccg atataatatt 2560 //