Dbfetch
ID KC706632; SV 1; circular; genomic DNA; STD; VRL; 2561 BP. XX AC KC706632; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato yellow vein streak virus isolate BR:Pda17:05 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato yellow vein streak virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2561 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2561 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (26-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; c2701c4916e7d3c068488195db4464a3. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2561 FT /organism="Tomato yellow vein streak virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Pda17:05" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2005" FT /db_xref="taxon:55216" FT CDS 156..899 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:M4QX73" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:M4QX73" FT /protein_id="AGH29991.1" FT /translation="MPKRDAPWRIVAGTTKVSRSSNYSPRGGIPKRDAWVNRPMYRKPR FT IYRTLRGPDVPKGCEGPCKVQSYEQRHDISHLGKVMCISDVTRGNGITHRVGKRFCVKS FT VYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDL FT RDRYQVIHRFNAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYM FT ACTHASNPVYATLKIRIYFYDSISN" FT CDS complement(896..1294) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QP16" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QP16" FT /protein_id="AGH29993.1" FT /translation="MDSRTAEPITVPQAENGVFIWEITNPLYFKITNVEDPSYTTSRIY FT HVQIRFNHNLRKALGLHKAFLNFQVWTTSLRASGMTYLTRFRYFVLLYLNQLGIISINN FT VIRAVRFATDKSYVSYVLENHSIKFKLY" FT CDS complement(1041..1430) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:M4QK86" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QK86" FT /protein_id="AGH29995.1" FT /translation="MLNSSSSTPPSIKPRHRAAKQKTTRRKRIDLNCGCSIYIHINCRN FT NGFTHRGTHHCASSREWRLYLGDYKSPLFQDNQRRGPILHNVQDIPCADTFQPQPAESV FT GSPQGISKFPSLDDIPESFWDDIFN" FT CDS complement(1351..2427) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QK87" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QK87" FT /protein_id="AGH29994.1" FT /translation="MPPPKRFTVNAKNFFLTYPHCSLTKEETLSQLQALKTPTNKKFIR FT VTREFHEDGEPHLHVLIQFEGKFKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDFIDFGNFQIDGRSARGGCQTANDTYAKVLNAENLSKALNILKEEQPRDYVLHLD FT KIQSHVQKIFAKAPAPWVPLFELSSFTHVPDEMQQWADEYFGRGAAARPERPISIIIEG FT DSRTGKTMWARALGSHNYLSGHLDFNSKVYSNEVEYNVIDDVTPQYLKMKHWKELIGSQ FT RDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKHENASLRAWTLHNAKFIFLN FT SPLYQATTQSSQTKNNPA" FT CDS complement(2013..2270) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QMJ3" FT /protein_id="AGH29992.1" FT /translation="MGNLISMCLFNSKANSNVRINDSSTWYPQQDQHISIQTFRELKAR FT PTSRPIWKKTETSLILEISRSMEDQQEEAAKLPMTLMQRF" XX SQ Sequence 2561 BP; 689 A; 472 C; 589 G; 811 T; 0 other; accggatggc cgcgcgattt ttttaagtgg tcccactgtg agtgaccaat cagattgtgt 60 cctgggcggt tatttatttc gaaatactta agcgctaagt tgttaaagtt gtataaatta 120 gacattcgta agtggtcgac atactttaat tcaaaatgcc aaagcgagat gccccatggc 180 gtatagtggc agggaccacg aaagtatccc gctcttctaa ttattcacct cggggaggta 240 tacccaagcg ggatgcttgg gtaaacaggc ccatgtacag gaagcccagg atatatcgta 300 cgttgagagg gcctgatgtt cctaaagggt gtgaaggccc atgtaaagtt caatcctatg 360 agcaacgtca tgacatttct catcttggca aggtgatgtg tatctctgat gtgacacgtg 420 gtaatggtat tacacaccgt gttggtaagc gtttttgtgt taagtctgtg tacatattgg 480 gtaagatatg gatggacgaa aatattaaac tgaagaacca taccaacagt gttatttttt 540 ggttagtgag ggatcgtcga ccctatggga cacctatgga ttttggtcag gtgtttaaca 600 tgtttgataa tgagcctagt actgctacgg tgaagaacga tcttcgtgat cgttatcaag 660 tcattcatcg attcaatgct aaggttacgg gtggacagta tgctagcaac gagcaagctc 720 ttgttcggcg tttctggaag gtcaataatc acgtggttta caatcatcag gaagcaggga 780 aatatgagaa ccatacggag aatgctctgt tattgtatat ggcatgtaca catgcctcta 840 atcccgtgta tgctactttg aaaattcgga tctattttta tgattcgatt tcaaattaat 900 aaagtttaaa ttttattgaa tgattttcga gtacataact tacataagat ttgtctgttg 960 cgaaacgaac agctcttatt acattgttaa tggaaataat acctaattga ttcagataca 1020 ataaaacgaa atatctaaat ctagttaaat atgtcatccc agaagctctc agggatgtcg 1080 tccagacttg gaaatttaga aatgccttgt ggagacccaa cgctttccgc aggttgtggt 1140 tgaaacgtat ctgcacatgg tatatcctgg acgttgtgta agatgggtcc tcgacgttgg 1200 ttatcttgaa atagagggga tttgtaatct cccaaataaa gacgccattc tctgcttgag 1260 gcacagtgat gggttccgcg gtgcgtgaat ccattatttc tacagttgat gtggatgtat 1320 atggagcagc cgcagtttag gtctatgcgt ttacgccggg ttgttttttg tttggctgct 1380 ctgtgtcgtg gcttgataga ggggggagtt gaggaagatg aatttagcat tatgcagtgt 1440 ccaagctctt agagatgcat tttcatgttt gtcaaggaag tctttataac tagccccctc 1500 tcctggattg caaagcacga ttgatgggat ccctccttta atttgaaccg gctttccgta 1560 cttgcaattg ctttgccagt cacgctggga cccaataagt tctttccagt gcttcatttt 1620 tagatattgt ggagtgacat catcaatgac gttatactcc acttcatttg aataaacttt 1680 agaattaaaa tccaagtgtc cactcaaata attatgtgat cctagtgcac gagcccacat 1740 agtcttcccc gtcctggaat caccctcaat gatgatacta ataggtcttt ccggccgcgc 1800 agcggcaccc cttccgaaat actcatcagc ccattgctgc atctcatcag gaacgtgagt 1860 aaaggaagat aattcaaata gagggaccca tggggctgga gcctttgcaa atattttttg 1920 gacatgtgat tgtattttat ccaaatgaag aacataatct ctaggttgtt cttcttttaa 1980 tatatttaag gccttggata gattttctgc gtttagaacc tttgcataag tgtcattggc 2040 agtttggcag cctcctcttg ctgatcttcc atcgatctgg aaatttccaa aatcaatgaa 2100 gtctccgtct ttttccatat aggtcttgac gtcggacgag cttttagctc cctgaatgtt 2160 tggatggaaa tgtgctgatc ttgttgggga taccaagtcg aagaatcgtt gattctgaca 2220 tttgaatttg ccttcgaatt gaataagcac atggagatga ggttccccat cttcgtgaaa 2280 ttctctggtt acacgaataa atttcttgtt tgttggtgtt ttaagtgcct gtaattggga 2340 aagtgtttcc tctttggtta atgaacaatg agggtatgta aggaagaaat tttttgcatt 2400 tacagtgaaa cgctttggcg gtggcattgt agtaaataag aagatgagac ccgatagctc 2460 tccttcaaac ttggcgaaat gaattgggga atgggtctca atatatagta gagtccatta 2520 tagaatataa ttgccacgtg gcggccatcc gatataatat t 2561 //