ID KC706628; SV 1; circular; genomic DNA; STD; VRL; 2673 BP. XX AC KC706628; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato yellow spot virus isolate BR:Jai56.1:08 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato yellow spot virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2673 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2673 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (28-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; 5aa70a4d1cf34838ac5ed065e8a7b6bb. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2673 FT /organism="Tomato yellow spot virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Jai56.1:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /db_xref="taxon:365523" FT CDS 262..1017 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:Q2LCU1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q2LCU1" FT /protein_id="AGH29972.1" FT /translation="MPKRGPSWRPMVGTSKVSRTSNFSPRGGIGPKFNKASEWVNRPMY FT RKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDITRGNGITHRVGKRF FT CVKSVYILGKVWMDENIKLKNHTNSCMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(1014..1412) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QNW4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QNW4" FT /protein_id="AGH29973.1" FT /translation="MDSRTGELITVPQAENGVYIWEISNPLYFKIYLVEEIMYTTTKVY FT HIQIRFNHNLRRALDLHKAFLNFQVWTTSLTASGTTYLHRFRHLVMLYLDRLGIITINN FT VIRAVRFATDRSYVNHVLENHSIKFKIY" FT CDS complement(1159..1548) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:M4QJY8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QJY8" FT /protein_id="AGH29975.1" FT /translation="MLNSSSSTPPSIKPQHRAAKRRGTRRRRIDLECGCTIYVHISCSN FT HGFTHRGTHHCASGREWRLYLGDIKSPVFQDLPSRRNNVHNDQSVPHPDTVQPQPQESV FT GSPQGIPELPSLDDISDSFWNDLFA" FT CDS complement(1469..2548) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QK46" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QK46" FT /protein_id="AGH29974.1" FT /translation="MPSAPKRFRISSKNYFLTYPRCSLSKEETLSQLQTINTPTNKKFI FT KICRELHEDGEPHLHVLIQFEGKFVCTNQRLFDLVSQTRSAHFHPNIQGAKSSSDVKSY FT IDKDGDTLEWGKFQVDGRSARGGQHTANDAAAEALNAPDKRTALQIIKEKLPEKYLFQF FT HNLNSNLDRIFSKAPEPWVPPFPLSSFTNVPDEMQEWADEYFGRGSAARPLRPKSLIVE FT GDSRTGKTMWARALGPHNYLSGHLDFNSKVFSNEVEYNVIDDVAPHYLKLKHWKELIGA FT QKDWQSNCKYGKPVQITVGIPAIVLCNPGEGVSYKDFLDKEENAALKSWTLHNAKFIFI FT DSPLYQTTTQSGEEKRNSP" FT CDS complement(2131..2394) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QWZ8" FT /protein_id="AGH29971.1" FT /translation="MKMGNLISTCLSSSKGSSSAQIKDSSTWYPKQGQHISIRTFRELN FT HRPTSSPTSTKTEILSNGGNSRSTDEVLEEVSIRLMTLQLRR" XX SQ Sequence 2673 BP; 683 A; 585 C; 613 G; 792 T; 0 other; accggatggc cgcccgattt ttgccctccc tacgtggcgc actggtggcc gctcgattcc 60 tctcactcgc tctcggggag tttctccttg atggtcccct catgcttgat tttctccttt 120 aattcaaatt aaaggattta actgttgtcc gaccaatcat agtgcgcctg aggagcttag 180 atatctgtgt taatacgtgg tccctaagtt ttattgtctc tataaaacta aagcaagact 240 gaagtcattc tttaattcga aatgcctaag cggggtccct catggcgccc aatggtgggg 300 acctcaaagg taagccgcac ttctaatttc tctcctcgtg gaggtatagg cccaaaattc 360 aacaaggcct ctgaatgggt taacaggccc atgtatagga agcccaggat atatcgtacg 420 ctcagaacgc ccgatgttcc cagaggctgt gaagggccct gtaaggtcca gtcttacgag 480 caacgtcacg atatctccca tgttgggaag gttatgtgta tatccgatat tacgcgcggc 540 aacggtatta ctcaccgtgt cggtaagcgt ttctgtgtta agtccgtgta tattttaggc 600 aaggtatgga tggacgagaa tatcaagctc aagaaccaca cgaacagttg catgttctgg 660 ttggtcagag accgaagacc ctatggaacg ccaatggatt ttggccaggt gttcaacatg 720 tttgacaacg agcccagtac tgcaaccgtg aagaacgatc tccgtgatcg tttccaggtc 780 atgcacaagt tctatgccaa ggtcactggt ggacagtatg ccagcaatga gcaggcgcta 840 gtcaagcggt tctggaaggt caacaaccat gtggtctaca atcaccagga ggctggcaag 900 tacgagaacc acacggagaa cgcattatta ttgtatatgg catgtactca tgcatctaac 960 cctgtgtatg caacgctgaa gattcgaatc tatttctatg attcaatcac aaattaataa 1020 attttgaatt ttattgaatg attttccagt acatgattta cataagatct gtcagtcgca 1080 aaacgaacag ctctaattac attgtttatc gtaataatgc ctaatcggtc taaatacaac 1140 atgactaagt gtctaaacct atgcaaataa gtcgttccag aagctgtcag agatgtcgtc 1200 cagacttgga agttcaggaa tgccttgtgg agatccaacg ctctcctgag gttgtggttg 1260 aaccgtatct ggatgtggta cactttggtc gttgtgtaca ttatttcttc tactaggtag 1320 atcttgaaat acaggggatt tgatatctcc cagatataaa cgccattctc tgcctgaggc 1380 acagtgatga gttccccggt gcgtgaatcc atggttgctg cagctgatgt ggacgtatat 1440 agtgcatcca cactctagat ctatccttct acggcgagtt cctcttctct tcgccgctct 1500 gtgttgtggt ttgatagagg ggggagtcga tgaagatgaa tttagcattg tgaagtgtcc 1560 acgattttaa agctgcattc tcttctttgt cgaggaaatc tttataactg actccctcac 1620 caggattgca gagcacgatt gctgggatgc caactgtaat ttgaactggc tttccgtatt 1680 tgcaatttga ctgccagtct ttttgagcac caatcaattc cttccagtgc tttaacttta 1740 gataatgcgg tgcgacgtca tcaatgacgt tatactccac ttcgttcgag aaaacctttg 1800 agttgaagtc cagatggcca ctcaagtaat tatgtgggcc taatgcacga gcccacatcg 1860 tcttccctgt ccttgaatca ccttcgacta tcaaactctt aggtctcaat ggccgcgcag 1920 ctgaacctct cccaaaatat tcatcggccc actcttgcat ctcgtcggga acgttagtga 1980 aggaggagag gggaaacgga ggaacccatg gctccggagc ctttgagaaa attctatcta 2040 aattagaatt taaattatga aattgaaaaa gatatttctc cggcaacttc tctttaatta 2100 tttgaagagc cgttcgttta tccggagcat ttaacgcctc agctgcagcg tcattagccg 2160 tatgctgacc tcctctagca cttcgtccgt cgacctggaa tttcccccat tcgagagtat 2220 ctccgtcttt gtcgatgtag gacttgacgt cggacgatga tttagctccc tgaatgttcg 2280 gatggaaatg tgctgacctt gtttgggata ccaggtcgaa gagtctttga tttgtgcaga 2340 cgaacttccc ttcgaactgg ataagcacgt ggagatgagg ttccccatct tcatgaagct 2400 ctctgcagat tttaatgaat ttcttatttg ttggagtatt tatggtttgt aattgggaaa 2460 gtgtctcttc tttagagaga gaacaacgag gatatgtgag gaagtagttt tttgaagaaa 2520 tacgaaatct tttaggagct gatggcattt ttgtaatact ggggttgtca ccaattgagc 2580 tctctctcaa aagtccttat gaattggtga cattggtgta caatatatac tagaagttct 2640 taagggtcct atagcggcca tccgtataat att 2673 //