ID KC706619; SV 1; circular; genomic DNA; STD; VRL; 2594 BP. XX AC KC706619; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato severe rugose virus isolate BR:Car226.5:08 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato severe rugose virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2594 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2594 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (26-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; 20ddd308bd1c251628fed62fdb4113e0. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2594 FT /organism="Tomato severe rugose virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Car226.5:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /db_xref="taxon:158463" FT CDS 173..928 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:A7UMY2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A7UMY2" FT /protein_id="AGH29948.1" FT /translation="MPKRDAPWRLTAGTSKVSRSVNFSPRAGYGPKYNKAAEWVNRPMY FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDESIKLKNHTNSVMFWLVRDRRPYSTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNNVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(925..1323) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:Q3HM69" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q3HM69" FT /protein_id="AGH29949.1" FT /translation="MDSRTGELITARQAENGVYIWEISNPLYFKINRVEDPMYTASRVY FT HVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLTRFKYLVLLYLDRLGVISINN FT VIRAVRFATDKSYVNAVLENHSIKFKFY" FT CDS complement(1070..1459) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:K7WZH3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K7WZH3" FT /protein_id="AGH29951.1" FT /translation="MRNSSSLTPPSIKVQHRAAKKRGIRRRRIDIECGCSIYVHIDCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHREQSLPRPNTVQPQPEESI FT ASPQELPQLPDMDDFTDSFWDDIFN" FT CDS complement(1401..2459) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QJW6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QJW6" FT /protein_id="AGH29950.1" FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLLKEEALSQLKTLNTPTNKKFI FT KVCRELHENGEPHLHVLLQFEGKYCCQNQRFFDLVSPTRSTHFHPNIQRGKSLSDVKSY FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNALSKDVALQIIREKLPEKFLFQF FT HNLNSNLDRIFTRAPEPWAPTFPLSSFTSVPREMQAWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGAHNYLSGHLDFNPRVYSNHVEYNVIDDIAPHYLKLKHWKELLGA FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENASLNNWTKHNAKFVFL FT NTPLYQGTTQSC" FT CDS complement(2042..2305) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QM87" FT /protein_id="AGH29947.1" FT /translation="MKMGSLISTCFFNLRANTAAKINDFLTWFPQQGQHISIRTFREVS FT HCPTSNPMLTRTEILSSGGNSKSTEEVLEAVARQLTTLPQKP" XX SQ Sequence 2594 BP; 668 A; 533 C; 594 G; 799 T; 0 other; accggatggc cgcgcgattt ttcaccccct ttagtttcaa ttaaagtaaa gtgattgtct 60 gtggcccaat catattgggc ctgtcgagct tagatatttg taacaactta agggcccaag 120 ttgttaaacg gctataaatt gaacatacac tttacttttg ctttaattca aaatgcctaa 180 gcgtgatgcc ccatggcgtt taacggcggg aacttcaaag gtttcccgct ctgtcaattt 240 ttctccccgt gcaggatatg gacccaaata taacaaggcc gctgagtggg tgaacaggcc 300 catgtacagg aagcccagga tctaccgtac tttgagaggc ccagatgttc ctagaggctg 360 tgaagggcct tgtaaggttc agtcttacga gtctcgtcat gatgtttccc atgtcgggaa 420 ggtgatttgt gtgtctgacg ttacacgtgg taacggtatt actcaccgtg ttggtaagcg 480 tttctgcgtg aagtctgtat atattttagg gaaggtatgg atggacgaga gcatcaagtt 540 gaagaatcac acaaatagtg tgatgttctg gttggttaga gatcggagac cttattcgac 600 acctatggat tttggccagg tgttcaacat gtttgacaac gagcctagca ctgcaactgt 660 taagaacgat cttcgggatc gttttcaggt catgcacaag ttttatgcta aggttactgg 720 tggacagtat gccagtaatg agcaggcatt agtgaagcgc ttttggaagg tcaacaacaa 780 cgtagtctac aaccatcagg aggcagggaa atacgagaat catactgaga acgccttgct 840 attgtatatg gcatgtactc atgcctctaa ccccgtgtat gctacattga aaattcggat 900 ctatttttat gattcgatta ctaattaata aaatttaaat tttattgaat gattttcgag 960 tacagcattt acatatgatt tgtctgttgc gaaacgaaca gctctgatta cattattaat 1020 ggaaataacg cctaaacgat ctagatacaa taagactaaa tatttaaatc tagttaaata 1080 tgtcgtccca gaagctgtca gtgaagtcgt ccatatctgg aagttgagga agctcttgtg 1140 gagatgcaat gctctcctca ggttgtggtt gaaccgtatt tggacgtggt agactctgct 1200 cgcggtgtac attggatcct ccactctgtt tatcttgaaa tagaggggat ttgatatctc 1260 ccaaatatag acgccattct ctgcctgacg tgcagtgatg agttcccctg tgcgtgaatc 1320 catgtcctct gcagtcgatg tgtacgtaaa tagagcaccc gcactctata tcaattcgtc 1380 gtctcctgat tcctcgtttt ttagcagctc tgtgttgtac cttgatagag gggggtgtta 1440 aggaagacga atttcgcatt gtgctttgtc caattattta gacttgcatt ttcttctttg 1500 tcgaggaaac atttatagct ggccccctcg ccaggattgc aaagcacgat acatgggata 1560 ccacctttaa tttgaactgg ctttccgtat ttgcagtttg attgccaatc cttttgggcc 1620 ccaagcaatt ctttccagtg ctttaacttt agatagtgcg gtgcgatgtc atcaatgacg 1680 ttatattcaa catgatttga ataaacccta ggattgaaat ctaggtgtcc actcaaataa 1740 ttatgggccc ctaatgcacg tgcccacatc gtctttcccg ttcgagaatc accttcaatg 1800 atgatactaa taggtcgttc cggccgcgca gcggcacctc tcccaaaata gtcatctgcc 1860 caagcttgca tctctctcgg tacgctagtg aaagaggaga ggggaaacgt aggggcccat 1920 ggctccggag cccttgtaaa tatcctatct aaattactat ttagattgtg aaactgaaat 1980 aagaactttt caggcagctt ctcacggatt atctgcaagg cgacgtcttt ggaaagtgcg 2040 ttcaaggctt ctgcggcagc gtcgttagct gtctggcaac cgcctctagc acttcttccg 2100 tcgatttgga attcccccca ctcgatagta tctccgtcct tgtcaacata ggatttgacg 2160 tcggacaatg acttacctct ctgaatgttc ggatggaaat gtgttgacct tgttggggaa 2220 accaggtcaa aaaatcgttg attttggcag cagtatttgc cctcaaattg aagaagcacg 2280 tggagatgag gctccccatt ttcatggagc tccctgcaaa ccttgatgaa ctttttattt 2340 gtaggagtgt ttagggtttt taattgggaa agtgcttctt ctttcaataa tgagcatttg 2400 ggatatgtga ggaaataatt cttcgctttt atttgaaagc gctttggagc tgatggcata 2460 tttgtaaata tgactcctac taccaattgg tagctgctct aaaactcata tgaattggta 2520 gttatggtag ctcttatata gtaaaagttc ctttaaggat attgtccccg gggggggcca 2580 tccgttataa tatt 2594 //