Dbfetch
ID KC706615; SV 1; circular; genomic DNA; STD; VRL; 2630 BP. XX AC KC706615; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato mottle leaf curl virus isolate BR:Jai13:08 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato mottle leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2630 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2630 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (15-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; a3612e8ec42a858a1bb2bab2774fbcd6. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2630 FT /organism="Tomato mottle leaf curl virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Jai13:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /db_xref="taxon:172394" FT CDS 206..961 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:M4QNR7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4QNR7" FT /protein_id="AGH29928.1" FT /translation="MPKRDAPWRSMAGTSKVSRAANFSPRGGIGSKSEKAQAWVNRPMF FT RKPRIYRMYRTPDVPKGCEGPCKVQSFEQRHDVSHTGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVLHRFYAKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(958..1356) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QK05" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QK05" FT /protein_id="AGH29929.1" FT /translation="MDSRTEELITAHQAQNGAFIWEVPNPLYFKITNVENPIHTNTRIY FT HIQIRFNHNLRRALDLHKCFLNFQIWTTSTTASGTTYLNRFRDLVNMYLDRLGVISINN FT VIRAVQFATDKPYVNYVLEDHSIKFKLY" FT CDS complement(1103..1492) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:M4QWW2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QWW2" FT /protein_id="AGH29931.1" FT /translation="MQNSSSSTPPSIKPQHRIAKKRVIRRKRIDLNCGCTIYQHIDCIG FT NGFTHRGTHHCTSGTEWRVYLGGPKSPIFQDNKRREPDTHEHKDIPHTDTVQPQPEESV FT GSPQVLPQLPNMDDVNDSFWDDLFK" FT CDS complement(1434..2489) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QJU7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QJU7" FT /protein_id="AGH29930.1" FT /translation="MPLPRRFRIHSKNYFLTYPKCSLTKEEALSQLLGLQTPVNKLFVR FT VARELHEDGEPHLHVLIQFEGKLQCTNERLFDLISPTRSAHFHPNVQGAKSSSDVKSYV FT EKDGDFIDHGVFQIDGRSARGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQHH FT NIRSNLERIFQKAPEPWVPPFPLSSFTEVPEEMQEWADDYFGMDPAARPERPISLIIEG FT DSRTGKTMWARALGPHNYLSGHLDFNPRVYSNEAEYNVIDDITPQYLKMKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENTALKNWTLHNAKFIFLD FT TPIYKTTTQDS" FT CDS complement(2039..2332) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QM67" FT /protein_id="AGH29927.1" FT /translation="MGNLISTCSSSSKGNYSAQTNDCSTSYPQPDQHISIRTFRELRAH FT QMSNPTWRKTETSLIMEFSRSTADQLEEVSNLPTTRMPRSSTQDPSWRPSIY" XX SQ Sequence 2630 BP; 662 A; 562 C; 621 G; 785 T; 0 other; accggatggc cgcgcgggtt tttttgaccc gctccgtgat gtattttttg tcttttacta 60 tgtggtccag tcaataaatg acaaatatga ccgtccaatc agaaatggtc ctcaaagcct 120 aattatttaa aaatacttgg tcactaagtt tggtaaagtt tataaatgat ccttcctcgt 180 aatgttatac caactttaag tcataatgcc taagcgtgat gccccatggc gctcaatggc 240 ggggacctca aaggttagtc gggccgccaa tttctcccct cgtggaggaa tcgggtcgaa 300 atcagagaag gcccaggcct gggttaacag gcccatgttc aggaagccca ggatatatcg 360 gatgtataga acccccgatg taccaaaggg atgcgaaggc ccatgtaagg tccaatcctt 420 tgagcagcgt cacgatgtct ctcatacggg gaaggtgatg tgtatttccg atgtcactcg 480 tggtaacggt attacccacc gcgtgggtaa acgtttttgt gtcaagtctg tgtatatatt 540 aggcaaggtc tggatggacg acaacatcaa gttgaagaac cacacgaata gtgtgatgtt 600 ctggttagtt agggacagga gaccgtatgg cactcccatg gatttcggcc aggtgttcaa 660 catgtttgac aacgagccca gtactgccac ggtgaagaac gatctccgcg atcgttacca 720 ggtcctgcac cggttctatg ccaaggttac aggtggacaa tacgccagca acgagcaggc 780 tattgtcaag aggttctgga aggtcaacaa ccatgtggtg tacaaccatc aagaggctgg 840 gaaatacgag aaccatacgg agaacgctct cttattgtat atggcatgta ctcatgcctc 900 taaccccgtg tatgctactt taaaaattcg gatctatttt tatgattcga taacaaatta 960 ataaagttta aattttattg aatgatcttc gagtacataa tttacatatg gtttgtctgt 1020 tgcgaattga acagctctaa ttacattatt aatagaaatg actcctaaac gatctaaata 1080 catattaact aaatccctaa acctatttaa ataagtcgtc ccagaagctg tcgttgacgt 1140 cgtccatatt tggaagttga ggaagcactt gtggagatcc aacgctctcc tcaggttgtg 1200 gttgaaccgt atctgtatgt ggtatatcct tgtgttcgtg tgtatcgggt tctctacgtt 1260 tgttatcttg aaatataggg gatttgggac ctcccagata aacgcgccat tctgtgcctg 1320 atgtgcagtg atgagttcct cggtgcgtga atccattgcc gatgcagtcg atgtgttggt 1380 atattgtgca gccacagttt aggtctatgc gcttgcgtcg aatgaccctc ttcttagcta 1440 tcctgtgttg tggttttata gatgggggtg tcgaggaaga tgaattttgc attgtggagt 1500 gtccagtttt tgagggctgt gttttcctct ttgtcgagaa aatctttata gctggcccct 1560 tctcctggat tgcatagcac gattgagggt atccctcctt taatttgaac tggctttccg 1620 tatttgcagt ttgattgcca gtctttttgg gccccaatga gctctttcca atgcttcatc 1680 tttagatatt gcggagtgat gtcatcaatg acattgtact ccgcttcgtt tgagtaaacc 1740 ctaggattga aatccaggtg tccactcaaa tagttatgtg ggcctaatgc acgcgcccac 1800 atcgtcttcc ccgtcctcga atcaccctcg atgatcaaac taataggtct ctccggccgc 1860 gcagcgggat ccataccaaa ataatcatca gcccactctt gcatctcctc cggaacctca 1920 gtaaaggagg agagtggaaa cggaggaacc catggttccg gagccttttg aaagatgcgt 1980 tctaaattag aacggatgtt gtgatgttga aggacgaagt ccttcggttg ttcctccctc 2040 aatatattga gggcctccat gacggatcct gcgttgagga ccttggcata cgtgtcgttg 2100 gcagattgct gacctcctct agctgatctg ccgtcgatct ggaaaactcc atgatcaatg 2160 aagtctccgt ctttctccac gtaggatttg acatctgatg agctcttagc tccctgaacg 2220 ttcggatgga aatgtgctga tctggttggg gatatgaggt cgaacaatcg ttcgtttgtg 2280 cactgtaatt tcccttcgaa ctggatgagc acgtggagat gaggttcccc atcttcgtgt 2340 aattctctgg caactcggac gaacaattta ttaactggcg tctgtaaccc taataattga 2400 gatagagctt cttcttttgt taaagagcac tttggataag tgaggaaata atttttagag 2460 tggattctaa aacgacgtgg taatggcatt tttgtaatta aggcgtgtac accaattgag 2520 ttctctctaa aactctatgg caatcggtgt attggggtac aatatatact agaagtctct 2580 atagaactct taatcatagt cacacacgtg gcggccatcc gtataatatt 2630 //