Dbfetch
ID KC706597; SV 1; circular; genomic DNA; STD; VRL; 2499 BP. XX AC KC706597; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato common mosaic virus isolate BR:Coi6:07 segment DNA-B, complete DE sequence. XX KW . XX OS Tomato common mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2499 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2499 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (01-MAR-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; 64e7897e8742fb3315fcdb7a11379b7b. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2499 FT /organism="Tomato common mosaic virus" FT /segment="DNA-B" FT /host="Solanum lycopersicum" FT /isolate="BR:Coi6:07" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2007" FT /db_xref="taxon:536084" FT CDS 412..1182 FT /codon_start=1 FT /product="nuclear shuttle protein" FT /note="NSP" FT /db_xref="GOA:M4QJV4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:M4QJV4" FT /protein_id="AGH29874.1" FT /translation="MYFSKNKRSWASSYRRISARYLTSKRSLGLLRNDSKRRVDIFSKS FT QEEIKMSSHRIHETQYGPEFLLGNNSAISTFITYPCLGKTEPSRTRSYIKLKRLRFNGT FT VKIERVHTDVNMNGIPSKIDGVFTIVVVIDRKPHLTSAGGLYTFDELFGARIHSHGNLA FT ITPLLRDRFYIRHVVKRVLSVEKDTTMLDLDGTTTLSNRRYNCWANFRDLDHESCNGNY FT ANICKNAILVYYCWMSDTVSKASTFVSFDLDYVG" FT CDS complement(1273..2154) FT /codon_start=1 FT /product="movement protein" FT /note="MP" FT /db_xref="GOA:M4QJU9" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:M4QJU9" FT /protein_id="AGH29873.1" FT /translation="MSSQLVVPPNAFNYVESHRDEYQLSHDLTEIVLQFPSTASQISAK FT LSRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESLQASWTFPLRCNIDLHYF FT SASFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS FT KQFSDKDIDFAHVGYGTWERKLVRCASTNKFGPSGPIEIKAGETWASRSTVGLSSSCMD FT TDKSNDLNPYRDLNRLGTTFLDPGDSASIVAAQRTQSNITLSLAQLNDIVRTTVQECIN FT TNCTPLEPKSLK" XX SQ Sequence 2499 BP; 754 A; 432 C; 505 G; 808 T; 0 other; acaggatggc cgcgcgatga ccgtcctctc gctaaatcat gaccctccac gtggctaata 60 tttttaattt agcgagaatt tgagttccga aaatgagttg agcgcctctt ttgagttccg 120 ctaacggatg gctgccacgt gcaattatct attaccgtta aatataatat aataagcgga 180 actttagttc gtacgatgac agcggtattg cactaacatt agtattattc atatttctcc 240 cgaaatatta atccacatgg tcaatatatt attttgacta tcgtacagga tatgctaggt 300 gtaccaatta aatgtggact tcattaacaa tttaacgtta aatgcaacaa gtgtgtctat 360 ataagttggc tattaatact ttcgagccac atccacagtt aatttaatga tatgtatttt 420 tcaaaaaata agcgtagttg ggcatctagt tatcgtcgta tatccgcacg atatcttact 480 tctaaaaggt cacttggttt attacgtaat gatagtaaac gtcgagtgga tatttttagt 540 aaatcccagg aagaaattaa gatgtcgtcc catcgaatac atgaaacaca atatgggcct 600 gaatttttat tagggaataa ttcggcgata tccacattta ttacgtatcc ttgtcttggc 660 aagacagagc ccagtcgtac taggtcatat atcaaattaa aacgcctgcg ttttaatggc 720 actgttaaaa ttgaacgtgt acacacagac gtgaacatga atgggatacc ttccaagatt 780 gatggagtat ttaccattgt tgttgttata gatcgaaaac ctcacttgac ttctgcgggt 840 ggtctctaca cattcgatga gctgtttggt gctaggattc acagtcatgg aaatttggca 900 ataactccat tattaaggga tcgtttttat atccgtcatg ttgtcaaacg tgtgttgtca 960 gtggagaagg atacgactat gcttgatctt gatgggacga caacattgtc taataggcgt 1020 tataactgtt gggctaattt tagggatctt gatcatgaat catgtaatgg aaattatgca 1080 aatatttgca agaacgctat attagtctat tattgttgga tgtctgacac agtgtcaaag 1140 gcatctacat ttgtgtcatt tgacctagat tatgttggat aaatttatat ataaatttgc 1200 attgtaattt gtctttaatc aagatttaat aagacatcgt tgaataactt agtaataacc 1260 ataaattaca atttatttca aagactttgg ttccaaaggt gtacaattgg tgttaataca 1320 ttcttggaca gttgtcctaa caatatcatt taactgggct aaggataacg taatgttgga 1380 ctgcgtcctt tgtgccgcaa cgattgaagc tgaatcacct gggtcaagaa atgttgtgcc 1440 caatctgttt aggtctctat atggattgag atcgttgctt ttatcagtgt ccatacatga 1500 actgctaaga ccaactgtac ttctggaggc ccatgtttct ccagccttaa tttctattgg 1560 gccggaaggc ccaaatttgt tagtcgatgc acacctgact aattttcgtt cccatgttcc 1620 gtacccaaca tgagcaaagt cgatatcctt atctgaaaac tgcttcgaca atatcttcac 1680 tgttggtgcc cggaaaggga tatctacaga gtgtttagct gtggatagtt ttaacttgcc 1740 cttgaatttt gcgaaatgtg ttctttggtg tacatttgta tcactaaccc tatagtatag 1800 tttccatgga atggggtctt taagcgagaa gaaagatgct gagaaataat gtaagtctat 1860 gttacatcta agagggaaag tccatgacgc ctgcaatgac tcgttgtctg tcattcgttt 1920 gtcatgaatt tcaactatga cagacccagt tgcatttata ggcacttgct gtctgtattc 1980 aatgacacaa tggtcgattt tcatacagct gcgactaagt ttagcactta tttgagacgc 2040 cgtagaagga aattgtagaa caatttcagt caagtcatga gacagctgat attcatcccg 2100 gtgtgattca acataattaa aagcattcgg aggaacaact aactgagaac tcattataca 2160 aaaaaagggc tgcgcagctg aaagcaagtg aaatcgataa gcaaaaaatg aataaagaac 2220 agtatagtta aagatgaaga tagatagtct gcgctgaacg tctatatgtt gtaaggaagt 2280 ttaataaata atttaatatg ggatgttaca catgcttcta tttatagcca acaatatgtg 2340 ataagtattt aatatgaaaa tggcattttt gtaaatatag gtgaggacac caggggttgc 2400 tctctacttc tgtgctattt gctggtgtcc tggtgtccca tttatactag aagtctctag 2460 ggtaatctca ggggcaaaag cggccatcca tataatatt 2499 //