Dbfetch
ID KC706577; SV 1; circular; genomic DNA; STD; VRL; 2560 BP. XX AC KC706577; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato common mosaic virus isolate BR:Coi24:07 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato common mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2560 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2560 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (01-MAR-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; 0269eafa09bea030972343ae0178df3e. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2560 FT /organism="Tomato common mosaic virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Coi24:07" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2007" FT /db_xref="taxon:536084" FT CDS 153..908 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:B3GNB8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B3GNB8" FT /protein_id="AGH29795.1" FT /translation="MPKRDAPWPHRAPSTKISRSANFSPRSGTGPGPSKAAEWVNRPMY FT RKPRIYRTMRTPDVPRGCEGPCKVQSYEQRHDISHTGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWRVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(905..1303) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QWK3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QWK3" FT /protein_id="AGH29796.1" FT /translation="MDSRTGERITVRQAENGVYIWDLTNPLYFKMYQVEDIRYTRTRVY FT HVQIRFNHNLRRALGLHKAFLNFQVWTTSLTASGTTYLNRFKYLVMLYIDQLGVISVNN FT VIRAVRFATDRSYVNAVLENHSIKFKLY" FT CDS complement(1050..1436) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:M4QNE5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QNE5" FT /protein_id="AGH29798.1" FT /translation="MLNSSSSTPPSIKLRHRIAKRAPRRRRIDLNCGCSLYVNLNCSNY FT GFTHRGTHHCASGREWRLYMGPNKSPLFQDVPSRGHPVHQDQSVPCPNKVQPQPEESTG FT SPQGISQLPSLDDIPDSFWDDLLK" FT CDS complement(1360..2427) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QLV6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QLV6" FT /protein_id="AGH29797.1" FT /translation="MPRNPNIFRLTARNIFLTYPQCDIPKDEALQMLQSLPWSVVKPTY FT IRVAREEHSDGFPHLHCLVQLSGKSNIKDVRFFDLTHPRRSTGFWPSVQAAKDTNAVKN FT YITKEGDYCESGQYKVSGGTKANKDDVYHNAVNASSPGEALDIIRAGDPKTFLVNYHNV FT KANLERIFQKAPAPWVPPFPLSSFTNVPDEMNEWADDYFGRDAAARPIRPISIVIEGNS FT RTGKTMWARALGPHNYLSGHLDFNSRVYSNDVLYNVIDDVSPHYLKLKHWKELIGAQID FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLAKEENASLKSWTLHNAKFIILNSP FT LYQTTAQDCEESTST" FT CDS complement(1938..2207) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="UniProtKB/TrEMBL:M4QJN7" FT /protein_id="AGH29794.1" FT /translation="MLGFSTSLTPDGLPDFGQVFRQPKTPMQSRITSPKKVIIVNPDST FT RCLGEQRQIKTTCTTTPSMHLLRERLSTLSGPETPRLSSSTITM" XX SQ Sequence 2560 BP; 662 A; 556 C; 612 G; 730 T; 0 other; actggatggc cgcgcaaaaa tttggacttg ggccgctttt tctggcccaa ttagaacagg 60 cctgacgagc ttagatattt gtaacaactt agagcccaag ttgtataacg gctataaatt 120 gaatctctat gttatttgaa ctttaatttg aaatgcctaa gcgcgatgcc ccatggcccc 180 acagggcacc ttcgacgaag attagccgtt cagctaattt ctcccctcgt tcgggaactg 240 ggcctgggcc tagcaaagcc gctgaatggg tgaataggcc catgtacagg aagcccagga 300 tatacagaac tatgagaacg cccgacgttc ctagaggctg tgaaggccca tgtaaggtcc 360 agtcctacga gcaacgccac gatatttccc atactgggaa ggtgatgtgc atatcagacg 420 tcacacgtgg caacggaatt acccaccgtg tcggtaagcg tttctgcgtt aagtctgtgt 480 atattctagg aaagatttgg atggacgaga acatcaagtt gaaaaaccat acgaacagtg 540 ctatgttctg gttggtcaga gaccgaagac catatggcac ccctatggat tttggccaag 600 tgttcaacat gtttgacaac gagcccagca ctgcaaccgt gaagaacgat ctacgtgatc 660 gtttccaggt tatgcataag ttctatgcca aggtcacggg tggacaatat gctagcaatg 720 agcaggcgct ggtcaagcgg ttctggaggg tcaacaatca tgtggtctac aatcatcaag 780 aagccgggaa gtatgagaat cacacggaga acgcgctgtt attgtatatg gcatgtactc 840 atgcctctaa ccctgtatat gcaactttaa aaattcggat ctatttttat gattcgataa 900 caaattaata taatttaaat tttattgaat gattttcaag tacagcattt acatatgatc 960 tgtctgttgc aaagcgaaca gctctaatta cattattaac tgaaatgact cctaactgat 1020 caatatacaa cattactaaa tatttaaatc tatttaagta agtcgtccca gaagctgtca 1080 gggatgtcgt ccagacttgg aagttgagaa atgccttgtg gagacccagt gctctcctca 1140 ggttgtggtt gaaccttatt tggacatggt acactctggt cctggtgtac cggatgtcct 1200 ctacttggta catcttgaaa taaaggggat ttgttaggtc ccatatatag acgccattct 1260 ctgcctgacg cacagtgatg cgttcccctg tgcgtgaatc catagttact gcagttgagg 1320 ttgacgtaca aagagcagcc acagtttagg tctatccttc tacgtcgagg tgctctcttc 1380 gcaatcctgt gccgtagttt gatagagggg ggagttgagg atgatgaatt tagcattatg 1440 gagtgtccac gacttgagag atgcgttttc ctctttggct aggaaatctt tatagctggc 1500 cccctctcca ggattgcaga gcacgattga tgggataccc cctttaattt gaactggctt 1560 tccgtactta caatttgatt gccaatctat ttgggcccca atcaattctt tccagtgctt 1620 taactttaag taatgcggag agacgtcatc aatgacgtta tacagtacat cgtttgagta 1680 aaccctagaa ttgaaatcca ggtgtccact tagatagtta tgtgggccaa gtgcacgcgc 1740 ccacatcgtc ttccccgtcc gactattacc ctcgatgaca atacttatag gtctgatagg 1800 ccgcgcagcg gcatcccttc caaaataatc atcagcccat tcgttcatct cgtcgggcac 1860 gttagtgaat gaggagaggg gaaacggagg aacccacggt gccggagctt tttggaagat 1920 cctctctaga ttagccttca cattgtgata gttgacgagg aaagtcttgg ggtctccggc 1980 cctgataatg tcgagagcct ctcccggaga agatgcattg acggcgttgt ggtacacgtc 2040 gtctttattt gcctttgttc ccccagacac cttgtactgt ccggattcac aataatcacc 2100 ttctttggtg atgtaattct tgactgcatt ggtgtctttg gctgcctgaa cacttggcca 2160 aaatccggta gaccgtctgg ggtgagtgag gtcgaaaaac ctaacatcct tgatattcga 2220 ttttccggag agttggacaa gacagtgaag atgggggaat ccgtcggagt gttcctctct 2280 ggcgactcgt atatatgtgg gtttgacgac tgaccatgga agagattgaa gcatttgaag 2340 agcttcatct tttggtatat cgcactgtgg atatgtgaga aatatgtttc tcgccgttaa 2400 tctgaatata ttagggttcc gtggcatttt tgtaaatata ggtgaggaca ccagtgattg 2460 ctctcaactt ctgtgctatt tgctggtgtc ctggtgtccc atttatacta gaactctcta 2520 gggtaatctc aggggcaaaa gcggccatcc atataatatt 2560 //