ID KC706565; SV 1; circular; genomic DNA; STD; VRL; 2558 BP. XX AC KC706565; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato chlorotic mottle virus isolate BR:Car231:08 segment DNA-B, complete DE sequence. XX KW . XX OS Tomato chlorotic mottle virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2558 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2558 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (26-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; 6d81c4086481069881f7af67165fcbff. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2558 FT /organism="Tomato chlorotic mottle virus" FT /segment="DNA-B" FT /host="Solanum lycopersicum" FT /isolate="BR:Car231:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /db_xref="taxon:172391" FT CDS 405..1223 FT /codon_start=1 FT /product="nuclear shuttle protein" FT /note="NSP" FT /db_xref="GOA:M4QJJ9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:M4QJJ9" FT /protein_id="AGH29744.1" FT /translation="MRLILIILKHAIRILNMYFNNNKRRWLSTNRRNYVRYSTFKRSHS FT VVRNDGKRRLGISNKPHDDSKMTSHRIHENQYGPDFVLGHNTAISTFITYPSLGKSEPN FT RIKSYIKLKRLRFKGTVKIERVPTDLNMNGFPAKIDGVFSLVIVVDRKPHLSPSGSLYT FT FDELFGARIHSHGNLAIISSLKDRFYIRHVAKRVLSVEKDSNMIDVEGTTTLSSRRYNC FT WANFRDFDHESCNGVYANISKNALLVYYCWMSETVSKASTFVSFDLDYIG" FT CDS complement(1305..2186) FT /codon_start=1 FT /product="movement protein" FT /note="MP" FT /db_xref="GOA:M4QN95" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:M4QN95" FT /protein_id="AGH29743.1" FT /translation="MSSNLVVPPNAFNYVESQRDEYQLSHDLTEIVLQFPSTASQISAK FT LSRSCMKIDHCVIEYRQQVPINATGSIIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF FT SSSFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS FT KQFSDKDIDFVHVGYGTWERKLVRCASTSRFGLNCPIEIKPGESWASRSTIGLSSSCVD FT SERGNDLHPHKELNRLDTLILDPGESASIVAAQRTQSNITLSLAQLNEIVKSTVQECIN FT TNCTPSEPKSLK" XX SQ Sequence 2558 BP; 737 A; 451 C; 516 G; 854 T; 0 other; accggatggc cgcgcgatcg ttctctctct tttaatcctg tccgtccacg tgtttaatga 60 atttagttga gcgcgaattt gaagtccgtg aattgtgttg agcgctttat tttagttccg 120 ctaacggatg atcgccacgt gtattaatat aagaccgttg aattaaatat gataagcgga 180 actttttcga atttcgcatt gtgtttttta gtgctgatta attatgaaat tcgaccgtta 240 gattgcacac gatagtgacg tattggtcat cgtgattgaa tactgtgtca ttagtacaag 300 tatttgttct agggtgcaat cataaaacat atgtaacgtg gaccagttaa atattgtctg 360 tataaccaag ataacccatt gatccaatta ctactatcta tataatgaga ttgatattga 420 taattttaaa acatgcaata agaattttga acatgtattt taataataat aagcgtcgtt 480 ggttgtccac caaccgtcgt aattacgtgc gatattctac gtttaaaagg tcacattctg 540 tggtacgcaa tgatgggaaa cgtcgattag gtatttcaaa caaaccccat gacgatagta 600 agatgacttc gcataggatt catgaaaacc aatatgggcc tgactttgta ttgggccaca 660 acacagcgat atccacgttt ataacttacc catctcttgg taaaagtgag cccaatcgta 720 ttaagtcgta cattaagctg aaacgtctgc gctttaaagg tactgttaag attgaacgtg 780 ttcctaccga tttgaacatg aatggatttc ctgctaagat tgatggagta ttttctttgg 840 ttattgttgt cgatcgtaaa cctcatttga gtccttctgg aagtctctac acattcgatg 900 agttatttgg tgctaggatc catagccatg gaaatttagc gataatctct tctctgaagg 960 atcgttttta catacgtcat gttgctaaac gtgtcttgtc agtggagaag gatagtaata 1020 tgattgacgt tgaggggact acaacactgt ctagtaggcg ttataattgc tgggcaaatt 1080 ttagagattt cgatcatgaa tcttgtaatg gtgtatatgc taacataagc aagaatgccc 1140 tattagttta ttattgttgg atgtcggaaa cagtttccaa agcatctaca tttgtatcat 1200 ttgatctcga ttatattgga taattatttg taaattatat attcgataag ttaaaatatg 1260 ttaataaatt gtcgtattct attaaacact caagaaagct taatttattt taaagacttt 1320 ggttcagatg gagtacaatt ggtattgata cattcttgga ctgtcgactt aacaatctca 1380 tttaattggg ccaacgataa ggtaatgttg gactgcgtcc tctgtgctgc aacgattgac 1440 gctgattctc cggggtctag aattaacgtg tccaatctgt tcagctcttt atgtggatgt 1500 agatcgttgc cccgttcgga gtccacacat gaactgctga gaccaattgt acttctggat 1560 gcccatgact ctccaggttt aatttctatt gggcagttaa gcccaaatct ggatgtcgaa 1620 gcgcatctga ctaatttcct ctcccatgtc ccgtaaccca catgaacaaa atcgatatcc 1680 ttatctgaaa actgcttcga caatatttta actgttggtg cccggaaagg gatatctact 1740 gagtgttttg ctgtggatag ttttaacttg cccttgaatt tggcgaaatg ggtcctttgg 1800 tgcacattcg tatcgctaac ccggtagtat aatttccatg gtattgggtc cttcagggaa 1860 aagaatgacg acgagaaata atgtaaatct atgttacatc taattgggaa ggtccatgac 1920 gcttgcaatg actcgttgtc cgtcattctc ttgtcatgta tttctactat gatagatcct 1980 gtggcgttta tcgggacttg ctgtctgtat tcgatgacgc aatgatctat tttcatgcag 2040 ctccgactaa gtttagcact aatttgagat gccgtagatg gaaattgtag aacaatttca 2100 gtaagatcat gagacaattg atattcatct ctttgagact caacataatt aaaagcattt 2160 ggagggacaa ccaaattaga actcattata ataaaaaaag gctgcgcagc tgaatcgata 2220 actggaatta ataagcttaa atgatatgaa ttcactaagc agaatgtcag aagacaatat 2280 aatttgttta tgatgatagt cagtactaac tggtttgtat ttatagacgg attgaatcct 2340 gagtttatac gaggtaccac ttcttatcga cgtcgttttt taactgaatg catccttgta 2400 aatttaagca atggcatatt tgtaataata gttgggcacc gattggggtc ttctcaaact 2460 ctctctagca attggggact ggggtcctat atatactaga accctctata gaactttcaa 2520 tctcgttcac acacgtggcg gccatcctat ataatatt 2558 //