ID KC706560; SV 1; circular; genomic DNA; STD; VRL; 2622 BP. XX AC KC706560; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato chlorotic mottle virus isolate BR:Flo210:08 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato chlorotic mottle virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2622 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2622 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (26-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; 82c8b255c1dd22c9ceabf8a2198ac82b. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2622 FT /organism="Tomato chlorotic mottle virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Flo210:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /db_xref="taxon:172391" FT CDS 198..953 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:M4QN37" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4QN37" FT /protein_id="AGH29728.1" FT /translation="MPKRDAPWRHMASTVKISRGVNSSPRAGVGPRSNKASDWVNRPMY FT RKPKIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHTGKVMCVSDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(950..1348) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QJF1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QJF1" FT /protein_id="AGH29729.1" FT /translation="MDSRTGELITAHQAENGVYTWEISNPLYFKMYNVEDILYTRTRVY FT HVQIRFNHNLRRVLGLHKAYLNFQIWTTSLRASGMTYLNRFKYLLMLYIDQLGVISVNN FT VIRAVRFATDKRYVNAVLENHSIKFKIY" FT CDS complement(1095..1484) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:M4QWE0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QWE0" FT /protein_id="AGH29731.1" FT /translation="MHNSSSSTPPSIKIQHRAAKKRAIRRRRIDLQCGCSIFVHIDCAG FT HGFTHRGTHHCTSGREWRVYLGNIKSPLFQDVQRRGHTIHEDQSLPRPNTVQPQPEEST FT GSPQGLSQLPNLDDIPESFWDDIFK" FT CDS complement(1426..2481) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QJB8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QJB8" FT /protein_id="AGH29730.1" FT /translation="MPPPKHFRVNSKNYFLTYPHCSLSKEEALSQILALNTPTNKLFIR FT VSRELHEDGQPHLHVLIQFEGKYNCKNNKFFDLVSPSRSAHFHPNIQGAKSSSDVKSYV FT EKDGDFVDHGVFQIDGRSARGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQHH FT NIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQDWVDDYFGRDAAARPERPISIIIEG FT DSRSGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKDENSALSSWTKHNAQFIFLN FT SPLYQNSTSGC" FT CDS complement(2031..2324) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QLP5" FT /protein_id="AGH29727.1" FT /translation="MGNLISTCSSSSKENTTAKITSSSTSSPQVGQHISIQTYRELRAH FT QMSNHTWKKTETSLIMEFSRSMADQLEEVSNLPTTRTPRFSTQDLSWKHSIY" XX SQ Sequence 2622 BP; 683 A; 547 C; 606 G; 786 T; 0 other; accggatggc cgcgcgattt ttttaaggcc cattcatttt gggccgcttg tttgggcctt 60 cacctttgat tttattgaaa gtacatttgg cccaatcatg atgcatttga caagctaaga 120 tatttacaac tacttaacgc ccaagttgta taacggctat aaattaaacg tgcatatgtc 180 gttaacttta attcaaaatg cctaagcgcg atgccccatg gcgccacatg gctagtacag 240 ttaagattag ccggggcgtt aatagttctc ctcgagcagg agttgggcca cggtctaaca 300 aggcctctga ctgggtaaac aggcccatgt acaggaagcc caagatatat cggatgtata 360 gaacccccga tgttccaagg ggttgtgaag gcccatgtaa agtccaatcg tttgaacagc 420 gtcacgatat ctcccatact ggtaaggtga tgtgtgtctc cgatgtcacc cgtggtaacg 480 gtattacaca tcgtgtgggt aagcgtttct gtgttaagtc tgtgtacatt ctgggtaaga 540 tatggatgga tgagaacatc aagttgaaga accacacgaa cagtgctatg ttttggttgg 600 tcagggaccg tagaccgtat ggtactccta tggactttgg ccaggtgttc aacatgttcg 660 acaacgagcc tagcaccgcc actgtgaaaa acgatctccg tgatcgtttt caagttatgc 720 acaagttcta tgctaaggtc acaggtggac aatacgcaag caacgagcag gcgcttgtca 780 agcggttctg gaaggtcaac aatcatgtcg tctataacca tcaagaagct ggaaagtatg 840 agaatcatac ggagaacgcc ctgttattgt atatggcatg tactcatgcc tcaaaccccg 900 tgtatgcaac tttaaaaatt cggatctatt tttatgattc gataacaaat taataaattt 960 tgaattttat tgaatgattc tcgagtacag catttacata tcgtttgtct gttgcgaagc 1020 gaacagctct aattacatta ttaactgaaa taacgcctag ctgatcaatg tacaacataa 1080 gcaaatattt aaatctattt aaatatgtca tcccagaagc tctcagggat gtcgtccaga 1140 tttggaagtt gagataagcc ttgtggagac ccagtactct cctcaggttg tggttgaacc 1200 gtatttggac gtggtagact ctggtcctcg tgtatagtat gtcctcgacg ttgtacatct 1260 tgaaataaag gggatttgat atttcccaag tatacacgcc attctctgcc tgatgtgcag 1320 tgatgagttc ccctgtgcgt gaatccatgt cctgcgcaat ctatgtgtac gaaaatggag 1380 cagccgcact gtaaatcaat tcgtcttctt cgtatagctc tcttcttagc agcccgatgt 1440 tgaattttga tagagggggg agttgaggaa gatgaattgt gcattgtgct ttgtccaact 1500 acttaatgct gagttttcat ctttgtcgag gaaacattta tagctggccc cctcgccagg 1560 attgcagagc acgatgcatg ggataccacc tttaatttga actggctttc cgtatttaca 1620 gtttgattgc caatcctttt gggccccaat caattctttc cagtgcttta actttagata 1680 gtgcggtgcg acatcatcaa tgacgttata ctggacatcg tttgagtaga cctttgaatt 1740 gaaatcgagg tgaccactca agtaattatg ggaccctaat gcacgtgccc acatcgtttt 1800 gccacttcga gaatcaccct cgattattat actgataggt ctttccggcc gcgcagcggc 1860 atccctcccg aaatagtcat ctacccaatc ttgcatctcg acaggcacgt tagtgaacga 1920 cgagagggga aacggaggaa cccaaggttc tggagccttt gcgaagatac gctctaaatt 1980 tgacctaatg ttatgatgtt gaagcacgaa atctttgggt tgttcctccc ttaatatatt 2040 gagtgcttcc atgacagatc ctgcgttgag aaccttggcg tacgtgtcgt tggcagattg 2100 ctgacctcct ctagctgatc tgccatcgat ctggaaaact ccatgatcaa cgaagtctcc 2160 gtctttttcc acgtatgatt tgacatctga tgagctctta gctccctgta tgtttggatg 2220 gaaatgtgct gacctacttg gggagacgag gtcgaagaac ttgttatttt tgcagttgta 2280 ttttccttcg aactggatga gcacgtggag atgaggttgc ccatcttcgt gtagttctct 2340 cgagacacga atgaataatt tattagttgg tgtgtttagg gctaatattt gggaaagtgc 2400 ttcttctttg gaaagagaac agtgtggata tgtcagaaaa taatttttgg aatttactcg 2460 gaaatgttta ggcggtggca tatttgtaat aatagttggg caccgattgg ggactctcta 2520 aacttgctct agcaattggg gactggggtc ctatatatac tagaaccctc tatagaactt 2580 tcaatctcgt tcacacacgt ggcggccatc cgatataata tt 2622 //