ID KC706559; SV 1; circular; genomic DNA; STD; VRL; 2624 BP. XX AC KC706559; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato chlorotic mottle virus isolate BR:Flo209:08 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato chlorotic mottle virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2624 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2624 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (26-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; 7e58eb3c89abd642f6e0de7041314772. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2624 FT /organism="Tomato chlorotic mottle virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Flo209:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /db_xref="taxon:172391" FT CDS 200..955 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:M4QN37" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4QN37" FT /protein_id="AGH29723.1" FT /translation="MPKRDAPWRHMASTVKISRGVNSSPRAGVGPRSNKASDWVNRPMY FT RKPKIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHTGKVMCVSDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(952..1350) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QJI4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QJI4" FT /protein_id="AGH29724.1" FT /translation="MDSRTGELITAHQAENGVYTWEISNPLYFKMYNVEDILYKRTRVY FT HVQIRFNHNLRRVLGLHKAYLNFQIWTTSLRASGMTYLNRFKYLVMLYIDQLGVISVNN FT VIRAVRFATDKQYVNAVLENHSIKFKIY" FT CDS complement(1097..1486) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:M4QWF0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QWF0" FT /protein_id="AGH29726.1" FT /translation="MHNSSSSTPPSIKVQHRAAKKRAIRRRRIDLQCGCSIFVHIDCAG FT HGFTHRGTHHCTSGREWRVYLGNIKSPLFQDVQRRGHTIQEDQSLPRPNTVQPQPEEST FT GSPQGLSQLPNLDDIPESFWDDIFK" FT CDS complement(1428..2483) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QJB4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QJB4" FT /protein_id="AGH29725.1" FT /translation="MPPPRHFRVNSKNYFLTYPHCSLSKEEALSQLLALNTPTNKLFIR FT VSRELHEDGQPHLHVLIQFEGKYNCKNNKFFDLVSPSRSAHFHPNIQGAKSSSDVKSYV FT EKDGDFVDHGVFQIDGRSTRGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQHH FT NIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQDWADDYFGRDAAARPERPISIIIEG FT DSRSGKTMWSRALGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHWKELLGAQ FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKDENSALSSWTKHNAQFIFLN FT SPLYQSSTSGC" FT CDS complement(2033..2326) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QLK0" FT /protein_id="AGH29722.1" FT /translation="MGNLISTCSSNSKENTTAKITSSSTSSPQVGQHISIQTYRELRAR FT QMSNHTWKKTETSLIMEFSRSMADQLEEVSNLPTTRTPRFSTQDLSWKHSIY" XX SQ Sequence 2624 BP; 688 A; 551 C; 600 G; 785 T; 0 other; accggatggc cgcgcgattt ttttttaagg cccattcagt ttgggccgct cttttgggcc 60 ttcaccttta attttaatga aattaaattt ggcccaatca tgatgcatct gacaagctaa 120 gatatttaca actacttaac gcccaagttg cataacggct ataaattaaa cgtgcatatg 180 tcgttaactt taattcaaaa tgcctaagcg cgatgcccca tggcgccaca tggctagtac 240 agttaagatt agccggggcg ttaatagttc tcctcgagca ggagttgggc cacggtctaa 300 caaggcctct gactgggtaa acaggcccat gtacaggaag cccaagatat atcggatgta 360 tagaacaccc gatgttccaa gaggttgtga aggcccatgt aaagtccaat cgtttgaaca 420 gcgtcacgat atctcccata ctggtaaggt gatgtgcgtc tccgatgtca cccgtggtaa 480 cggtattaca catcgtgtgg gtaagcgttt ctgtgttaag tctgtgtata tcctgggtaa 540 gatatggatg gatgagaaca tcaagttgaa gaaccacacg aacagtgcca tgttttggtt 600 ggtcagggac cgtagaccgt atggcacccc tatggacttt ggccaggtgt ttaacatgtt 660 tgacaacgag cctagcaccg ccactgtgaa aaacgatctc cgtgatcgtt ttcaagttat 720 gcacaagttt tatgctaagg tcacaggtgg acaatacgca agcaacgagc aggcgcttgt 780 caagcggttt tggaaggtca acaatcatgt cgtctataac catcaagaag ccggaaagta 840 cgagaatcat acggagaatg ccctgttatt gtatatggca tgtactcatg cctcaaaccc 900 cgtgtatgca actttaaaaa ttcggatcta tttttatgat tcgataacaa attaataaat 960 tttgaatttt attgaatgat tctcgagtac agcatttaca tattgtttgt ctgtggcgaa 1020 gcgtacagct ctaattacat tattaactga aataacgcct agctgatcaa tgtacaacat 1080 aactaaatat ttaaatctat ttaaatatgt catcccagaa gctctcaggg atgtcgtcca 1140 gatttggaag ttgagataag ccttgtggag acccagtact ctcctcaggt tgtggttgaa 1200 ccgtatttgg acgtggtaga ctctggtcct cttgtatagt atgtcctcga cgttgtacat 1260 cttgaaataa aggggatttg atatttccca agtatacacg ccattctctg cctgatgtgc 1320 agtgatgagt tcccctgtgc gtgaatccat gtcctgcgca atctatgtgt acgaaaatgg 1380 agcagccgca ctgtaaatca attcgtcttc ttcgtatagc tctcttctta gcagcccgat 1440 gttgaacttt gatagagggg ggagttgagg aagatgaatt gtgcattgtg ctttgtccaa 1500 ctacttaatg ctgagttttc atccttgtcg aggaaacatt tatagctggc cccctcgcca 1560 ggattgcaga gcacgatgca tgggatacca cctttaattt gaactggctt tccgtattta 1620 cagtttgatt gccaatcctt ttgggcccca agcaattctt tccagtgctt taactttaga 1680 tagtgcggtg cgacatcatc aatgacgtta tactgcacat cgtttgagta gacctttgaa 1740 ttgaaatcga ggtgaccact caagtaatta tgggacccta atgcacgtga ccacatcgtt 1800 ttgccacttc gagaatcacc ctcgattatt atactgatag gtctctccgg ccgcgcagcg 1860 gcatctctcc cgaaatagtc atctgcccaa tcttgcatct cgacaggcac gttagtgaac 1920 gacgagagtg gaaacggagg aacccaaggt tctggagcct ttgcgaaaat acgctctaaa 1980 tttgacctaa tgttatgatg ttgaagcacg aaatctttgg gttgttcctc ccttaatata 2040 ttgagtgctt ccatgacaga tcctgcgttg agaaccttgg cgtacgtgtc gttggcagat 2100 tgctgacctc ctctagttga tctgccatcg atctggaaaa ctccatgatc aacgaagtct 2160 ccgtcttttt ccacgtatga tttgacatct gacgagctct tagctccctg tatgtttgga 2220 tggaaatgtg ctgacctact tggggagacg aggtcgaaga acttgttatt tttgcagttg 2280 tattttcctt cgaattggat gagcacgtgg agatgaggtt gcccatcttc gtgtagttct 2340 ctcgacacac gaatgaataa tttattagtt ggtgtgttta gggctaataa ttgggaaagt 2400 gcttcttctt tggaaagaga acagtgtgga tatgtcagaa aataattttt ggaatttact 2460 cggaaatgtc tgggcggtgg catatttgta ataatagttg ggcaccgatt ggggactctc 2520 taaacttgct ctagcaattg gggactgggg tcctatatat actagaaccc tctatagaac 2580 tttcaatctc gttcacacac gtggcggcca tcctatataa tatt 2624 //