Dbfetch
ID KC706556; SV 1; circular; genomic DNA; STD; VRL; 2622 BP. XX AC KC706556; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato chlorotic mottle virus isolate BR:Flo193:08 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato chlorotic mottle virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2622 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2622 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (26-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; 127ad97be91213741c34f481bb178aed. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2622 FT /organism="Tomato chlorotic mottle virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Flo193:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /db_xref="taxon:172391" FT CDS 199..954 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:M4QN63" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4QN63" FT /protein_id="AGH29708.1" FT /translation="MPKRDAPWRHMASTVKISRGVNSSPRAGVGPRSNKASDWVNRPMY FT RKPKIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHTGKVMCVSDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQMFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(951..1349) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QJC6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QJC6" FT /protein_id="AGH29709.1" FT /translation="MDSRTGELITAHQAENGVYTWEISNPLYFKMYNVEDILYTRTRVY FT HVQIRFNHNLRRVLGLHKAYLNFQIWTTSLRASGMTYLNRFKYLVMLYIDQLGVISVNN FT VIRAVRFATDKQYVNAVLENHSIKFKIY" FT CDS complement(1096..1485) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:M4QWE0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QWE0" FT /protein_id="AGH29711.1" FT /translation="MHNSSSSTPPSIKIQHRAAKKRAIRRRRIDLQCGCSIFVHIDCAG FT HGFTHRGTHHCTSGREWRVYLGNIKSPLFQDVQRRGHTIHEDQSLPRPNTVQPQPEEST FT GSPQGLSQLPNLDDIPESFWDDIFK" FT CDS complement(1427..2482) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QJA1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QJA1" FT /protein_id="AGH29710.1" FT /translation="MPPPRHFRVNSKNYFLTYPHCSLSKEEALSQLLALNTPTNKLFIR FT VSRELHEDGQPHLHVLIQFEGKYNCKNNKFFDLVSPSRSAHFHPNIQGAKSSSDVKSYV FT EKDGDFVDHGVFQIDGRSTRGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQHH FT NIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQDWADDYFGRDAAARPERPISIIIEG FT DSRSGKTMWSRALGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKDENSALSSWTKHNAQFIFLN FT SPLYQNSTSGC" FT CDS complement(2032..2325) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QLK0" FT /protein_id="AGH29707.1" FT /translation="MGNLISTCSSNSKENTTAKITSSSTSSPQVGQHISIQTYRELRAR FT QMSNHTWKKTETSLIMEFSRSMADQLEEVSNLPTTRTPRFSTQDLSWKHSIY" XX SQ Sequence 2622 BP; 691 A; 550 C; 601 G; 780 T; 0 other; accggatggc cgcgggattt tttttaaggc ccattcagtt tgggccgctc ttttgggcct 60 tcacctttaa ttttaatgaa agtaaatttg gcccaatcat gatgcatctg acaagctaag 120 atatttacaa ctacttaacg cccaagttgc ataacggcta taaattaaac gtgcatatgt 180 cgttaacttt aattcaaaat gcctaagcgc gatgccccat ggcgccacat ggctagtaca 240 gttaagatta gccggggcgt taatagttct cctcgagcag gagttgggcc acggtctaac 300 aaggcctctg actgggtaaa caggcccatg tacaggaagc ccaagatata tcggatgtat 360 agaacacccg atgttccaag aggttgtgaa ggcccatgta aagtccaatc gtttgaacag 420 cgtcacgata tctcccatac tggtaaggtg atgtgcgtct ccgatgtcac ccgtggtaac 480 ggtattacac atcgtgtggg taagcgtttc tgtgttaagt ctgtgtatat tctgggtaag 540 atatggatgg atgagaacat caagttgaag aaccacacga acagtgccat gttttggttg 600 gtcagggacc gtagaccgta tggcactcct atggactttg gccagatgtt taacatgttc 660 gacaacgagc ctagcaccgc cactgtgaaa aacgatctcc gtgatcgttt tcaagttatg 720 cacaagttct atgctaaggt cacaggtgga caatacgcaa gcaacgagca ggcgcttgtc 780 aagcggttct ggaaggtcaa caatcatgtc gtctataacc atcaagaagc cggaaagtac 840 gagaatcata cggagaacgc cctgttattg tatatggcat gtactcatgc ctcaaacccc 900 gtgtatgcaa ctttaaaaat tcggatctat ttttatgatt cgataacaaa ttaataaatt 960 ttgaatttta ttgaatgatt ctcgagtaca gcatttacat attgtttgtc tgtggcgaag 1020 cgtacagctc taattacatt attaactgaa ataacgccta gctgatcaat gtacaacata 1080 actaaatatt taaatctatt taaatatgtc atcccagaag ctctcaggga tgtcgtccag 1140 atttggaagt tgagataagc cttgtggaga cccagtactc tcctcaggtt gtggttgaac 1200 cgtatttgga cgtggtagac tctggtcctc gtgtatagta tgtcctcgac gttgtacatc 1260 ttgaaataaa ggggatttga tatttcccaa gtatacacgc cattctctgc ctgatgtgca 1320 gtgatgagtt cccctgtgcg tgaatccatg tcctgcgcaa tctatgtgta cgaaaatgga 1380 gcagccgcac tgtaaatcaa ttcgtcttct tcgtatagct ctcttcttag cagcccgatg 1440 ttgaattttg atagaggggg gagttgagga agatgaattg tgcattgtgc tttgtccaac 1500 tacttaatgc tgagttttca tccttgtcga ggaaacattt atagctggcc ccctcgccag 1560 gattgcagag cacgatgcat gggataccac ctttaatttg aactggcttt ccgtatttac 1620 agtttgattg ccaatccttt tgggccccaa tcaattcttt ccagtgcttt aactttagat 1680 agtgcggtgc gacatcatca atgacgttat actgcacatc gtttgagtag acctttgaat 1740 tgaaatcgag gtgaccactc aagtaattat gggaccctaa tgcacgtgac cacatcgttt 1800 tgccacttcg agaatcaccc tcgattatta tactgatagg tctctccggc cgcgcagcgg 1860 catctctccc gaaatagtca tctgcccaat cttgcatctc gacaggcacg ttagtgaacg 1920 acgagagtgg aaacggagga acccaaggtt ctggagcctt tgcgaaaata cgctctaaat 1980 ttgacctaat gttatgatgt tgaagcacga aatctttggg ttgttcctcc cttaatatat 2040 tgagtgcttc catgacagat cctgcgttga gaaccttggc gtacgtgtcg ttggcagatt 2100 gctgacctcc tctagttgat ctgccatcga tctggaaaac tccatgatca acgaagtctc 2160 cgtctttttc cacgtatgat ttgacatctg acgagctctt agctccctgt atgtttggat 2220 ggaaatgtgc tgacctactt ggggagacga ggtcgaagaa cttgttattt ttgcagttgt 2280 attttccttc gaattggatg agcacgtgga gatgaggttg cccatcttcg tgtagttctc 2340 tcgacacacg aatgaataat ttattagttg gtgtgtttag ggctaataat tgggaaagtg 2400 cttcttcttt ggaaagagaa cagtgtggat atgtcagaaa ataatttttg gaatttactc 2460 ggaaatgtct gggcggtggc atatttgtaa taatagatgg gcaccgattg gggatcacta 2520 aacttgctct agcaattggg gactggggtc ctatatatac tagaaccctc tatagaactt 2580 tcaatctcgt tcacacacgt ggcggccatc ctatataata tt 2622 //