ID KC706551; SV 1; circular; genomic DNA; STD; VRL; 2622 BP. XX AC KC706551; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato chlorotic mottle virus isolate BR:Flo186:08 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato chlorotic mottle virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2622 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2622 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (26-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; 1ff2e0860b0c4749c6e9ef018c7ba2b3. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2622 FT /organism="Tomato chlorotic mottle virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Flo186:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /db_xref="taxon:172391" FT CDS 198..953 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:M4QN41" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4QN41" FT /protein_id="AGH29683.1" FT /translation="MPKRDAPWRHMASTVKISRGVNSSPRAGVGPRSNKASDWVNRPMY FT RKPKIYRMYRSPDVPRGCEGPCKVQSFEQRHDISHTGKVMCVSDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(950..1348) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QJF1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QJF1" FT /protein_id="AGH29684.1" FT /translation="MDSRTGELITAHQAENGVYTWEISNPLYFKMYNVEDILYTRTRVY FT HVQIRFNHNLRRVLGLHKAYLNFQIWTTSLRASGMTYLNRFKYLLMLYIDQLGVISVNN FT VIRAVRFATDKRYVNAVLENHSIKFKIY" FT CDS complement(1095..1484) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:M4QWC3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QWC3" FT /protein_id="AGH29686.1" FT /translation="MHNSSSSTPPSIKIQHRDAKKRAIRRRRIDLQCGCSIFVHIDCAG FT HGFTHRGTHHCTSGREWRVYLGNIKSPLFQDVQRRGHTIHEDQSLPRPNTVQPQPEEST FT GSPQGLSQLPNLDDIPESFWDDIFK" FT CDS complement(1426..2481) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QJ80" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QJ80" FT /protein_id="AGH29685.1" FT /translation="MPPPKHFRVNSKNYFLTYPPCSLSKEEALSQILALNTPTNKLFIR FT VSRELHEDGQPHLHVLIQFEGKYNCKNNKFFDLVSPSRSAHFHPNIQGVKSSSDVKSYV FT EKDGDFVDHGVFQIDGRSARGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQHH FT NIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQDWVNEYFGRDAAARPERPISIIIEG FT DSRSGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENSALSSWTKHNAQFIFLN FT SPLYQNSTSGC" FT CDS complement(2031..2324) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QLK0" FT /protein_id="AGH29682.1" FT /translation="MGNLISTCSSNSKENTTAKITSSSTSSPQVGQHISIQTYRELRAR FT QMSNHTWKKTETSLIMEFSRSMADQLEEVSNLPTTRTPRFSTQDLSWKHSIY" XX SQ Sequence 2622 BP; 686 A; 548 C; 598 G; 790 T; 0 other; accggatggc cgcgcgattt ttttaaggcc cattcatttt gggccgctct tttgggcctt 60 cacctttaat tttattgaaa gtaaatttgg cccaatcatg atgcatttga caagctaaga 120 tatttacaac tacttaacgc ccaagttgta taacggctat aaattaaacg tgcatatgtc 180 gttaacttta attcaaaatg cctaagcgcg atgccccatg gcgccacatg gctagtacag 240 ttaagattag ccggggcgtt aatagttctc ctcgagcagg agttgggcca cggtctaaca 300 aggcctctga ttgggtaaac aggcccatgt acaggaagcc caagatatat cggatgtata 360 gatcccccga tgttccaagg ggttgtgaag gcccatgtaa agtccaatcg tttgaacagc 420 gtcacgatat ctcccatact ggtaaggtga tgtgtgtttc cgatgtcacc cgtggtaacg 480 gtattacaca tcgtgtgggt aagcgtttct gtgttaagtc tgtgtacatt ctgggtaaga 540 tatggatgga tgagaacatc aagttgaaga accacacgaa cagtgctatg ttttggttgg 600 tcagggaccg tagaccgtat ggcactccta tggactttgg ccaggtgttt aacatgttcg 660 acaacgagcc tagcaccgcc actgtgaaaa acgatctccg tgatcgtttt caagttatgc 720 acaagttcta tgctaaggtc acaggtggac aatacgcaag caacgagcag gcgcttgtca 780 agcggttctg gaaggtcaac aatcatgtcg tctacaacca tcaagaagct ggaaagtatg 840 agaatcatac ggagaacgcc ttgttattgt atatggcatg tactcatgcc tcaaaccccg 900 tgtatgcaac tttaaaaatt cggatctatt tttatgattc gataacaaat taataaattt 960 tgaattttat tgaatgattc tcgagtacag catttacata tcgtttgtct gttgcgaagc 1020 gaacagctct aattacatta ttaactgaaa taacgcctag ctgatcaatg tacaacataa 1080 gcaaatattt aaatctattt aaatatgtca tcccagaagc tctcagggat gtcgtccaga 1140 tttggaagtt gagataagcc ttgtggagac ccagtactct cctcaggttg tggttgaacc 1200 gtatttggac gtggtagact ctggtcctcg tgtatagtat gtcctcgacg ttgtacatct 1260 tgaaataaag gggatttgat atttcccaag tatacacgcc attctctgcc tgatgtgcag 1320 tgatgagttc ccctgtgcgt gaatccatgt cctgcgcaat ctatgtgtac gaaaatggag 1380 cagccgcact gtaaatcaat tcgtcttctt cgtatagctc tcttcttagc atcccgatgt 1440 tgaattttga tagagggggg agttgaggaa gatgaattgt gcattgtgct ttgtccaact 1500 acttaatgct gagttctcct ctttatcgag gaaacattta tagctggccc cctcgccagg 1560 attgcaaagc acgatgcatg ggataccacc tttaatttga actggctttc cgtatttaca 1620 gtttgattgc caatcttttt gggccccaat caattctttc caatgcttta actttagata 1680 gtgcggtgcg acatcatcaa tgacgttata ctgcacatcg tttgagtaga cctttgaatt 1740 gaaatcgagg tgaccactca agtaattatg ggaccctaat gcacgtgccc acatcgtttt 1800 gccacttcga gaatcaccct cgattattat actgataggt ctctccggcc gcgcagcggc 1860 atctctcccg aaatattcat ttacccaatc ttgcatctcg acaggcacgt tagtgaacga 1920 cgagagtgga aacggaggaa cccaaggttc tggagccttt gcgaaaatac gctctaaatt 1980 tgacctaatg ttatgatgtt gaagcacgaa atctttgggt tgttcctccc ttaatatatt 2040 gagtgcttcc atgacagatc ctgcgttgag aaccttggcg tacgtgtcgt tggcagattg 2100 ctgacctcct ctagctgatc tgccatcgat ctggaaaact ccatgatcaa cgaagtctcc 2160 gtctttttcc acgtatgatt tgacatctga cgagctctta actccctgta tgtttggatg 2220 gaaatgtgct gacctacttg gggagacgag gtcgaagaac ttgttatttt tgcagttgta 2280 ttttccttcg aattggatga gcacgtggag atgaggttgc ccatcttcgt gtagctctct 2340 cgagacacga atgaataatt tattagttgg tgtgtttagg gctaatattt gggaaagtgc 2400 ttcttctttg gaaagagaac agggtggata tgtcaggaaa taatttttgg aatttactcg 2460 gaaatgtttg ggcggtggca tatttgtaat aatagctggg caccgattgg ggactctcta 2520 aacttgctct agcaattggg gactggggtc ctatatatac tagaaccctc tatagaactt 2580 tcaatcctgt tcacacacgt ggcggccatc cgatataata tt 2622 //