ID KC706549; SV 1; circular; genomic DNA; STD; VRL; 2623 BP. XX AC KC706549; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato chlorotic mottle virus isolate BR:Flo182:08 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato chlorotic mottle virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2623 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2623 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (26-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; b8802a49a708dc4df79c0357473d1da2. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2623 FT /organism="Tomato chlorotic mottle virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Flo182:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /db_xref="taxon:172391" FT CDS 212..955 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:M4QN32" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4QN32" FT /protein_id="AGH29673.1" FT /translation="MPPWRHMASTVKISRGVNSSPRAGVGPRSNKASDWVNRPMYRKPK FT IYRMYRTPDVPRGCEGPCKVQSFEQRHDISHTGKVMCVSDVTRGNGITHRVGKRFCVKS FT VYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDL FT RDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYM FT ACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(952..1350) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QJC6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QJC6" FT /protein_id="AGH29674.1" FT /translation="MDSRTGELITAHQAENGVYTWEISNPLYFKMYNVEDILYTRTRVY FT HVQIRFNHNLRRVLGLHKAYLNFQIWTTSLRASGMTYLNRFKYLVMLYIDQLGVISVNN FT VIRAVRFATDKQYVNAVLENHSIKFKIY" FT CDS complement(1097..1486) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:M4QW87" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QW87" FT /protein_id="AGH29676.1" FT /translation="MHNSSSSTPPSIKVQHRAAKKRAIRRRRIDLQCGCSIFVHIDCAG FT HGFTHRGTHHCTSGREWRVYLGNIKSPLFQDVQRRGHTIHEDQSLPRPNTVQPQPEEST FT GSPQGLSQLPNLDDIPESFWDDIFK" FT CDS complement(1428..2483) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QJ71" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QJ71" FT /protein_id="AGH29675.1" FT /translation="MPPPRHFRVNSKNYFLTYPHCSLSKEEALSQLLALNTPTNKLFIR FT VSRELHEDGQPHLHVLIQFEGKYNCKNNKFFDLVSPSRSAHFHPNIQGAKSSSDVKSYV FT EKDGDFVDHGVFQIDGRSTRGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQHH FT NIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQDWANDYFGRDAAARPERPISIIIEG FT DSRSGKTMWSRALGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKDENSALSSWTKHNAQFIFLN FT SPLYQSSTSGC" FT CDS complement(2033..2326) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QLK0" FT /protein_id="AGH29672.1" FT /translation="MGNLISTCSSNSKENTTAKITSSSTSSPQVGQHISIQTYRELRAR FT QMSNHTWKKTETSLIMEFSRSMADQLEEVSNLPTTRTPRFSTQDLSWKHSIY" XX SQ Sequence 2623 BP; 690 A; 552 C; 603 G; 778 T; 0 other; accggatggc cgcgcgattt tttttaaggc ccattcagtt tgggccgctc ttttgggcct 60 tcacctttaa ttttaatgaa agtaaatttg gcccaatcat gatgcatctg acaagctaag 120 atatttacaa ctacttaacg cccaagttgc ataacggcta taaattaaac gtgcatatgt 180 cgttaacttt aattcaaaat gcctaagcgc gatgccccca tggcgccaca tggctagtac 240 agttaagatt agccggggcg ttaatagttc tcctcgagca ggagttgggc cacggtctaa 300 caaggcctct gactgggtaa acaggcccat gtacaggaag cccaagatat atcggatgta 360 tagaacaccc gatgttccaa gaggttgtga aggcccatgt aaagtccaat cgtttgaaca 420 gcgtcacgat atctcccata ctggtaaggt gatgtgcgtc tccgatgtca cccgtggtaa 480 cggtattaca catcgtgtgg gtaagcgttt ctgtgttaag tctgtgtata ttctgggtaa 540 gatatggatg gatgagaaca tcaagttgaa gaaccacacg aacagtgcca tgttttggtt 600 ggtcagggac cgtagaccgt atggcacccc tatggacttt ggccaggtgt ttaacatgtt 660 cgacaacgag cctagcaccg ccactgtgaa aaacgatctc cgtgatcgtt ttcaagttat 720 gcacaagttc tatgctaagg tcacaggtgg acaatacgca agcaacgagc aggcgcttgt 780 caagcggttc tggaaggtca acaatcatgt cgtctataac catcaagaag ccggaaagta 840 cgagaatcat acggagaacg ccctgttatt gtatatggca tgtactcatg cctcaaaccc 900 cgtgtatgca actttaaaaa ttcggatcta tttttatgat tcgataacaa attaataaat 960 tttgaatttt attgaatgat tctcgagtac agcatttaca tattgtttgt ctgtggcgaa 1020 gcgtacagct ctaattacat tattaactga aataacgcct agctgatcaa tgtacaacat 1080 aactaaatat ttaaatctat ttaaatatgt catcccagaa gctctcaggg atgtcgtcca 1140 gatttggaag ttgagataag ccttgtggag acccagtact ctcctcaggt tgtggttgaa 1200 ccgtatttgg acgtggtaga ctctggtcct cgtgtatagt atgtcctcga cgttgtacat 1260 cttgaaataa aggggatttg atatttccca agtatacacg ccattctctg cctgatgtgc 1320 agtgatgagt tcccctgtgc gtgaatccat gtcctgcgca atctatgtgt acgaaaatgg 1380 agcagccgca ctgtaaatca attcgtcttc ttcgtatagc tctcttctta gcagcccgat 1440 gttgaacttt gatagagggg ggagttgagg aagatgaatt gtgcattgtg ctttgtccaa 1500 ctacttaatg ctgagttttc atccttgtcg aggaaacatt tatagctggc cccctcgcca 1560 ggattgcaga gcacgatgca tgggatacca cctttaattt gaactggctt tccgtattta 1620 cagtttgatt gccaatcctt ttgggcccca atcaattctt tccagtgctt taactttaga 1680 tagtgcggtg cgacatcatc aatgacgtta tactgcacat cgtttgagta gacctttgaa 1740 ttgaaatcga ggtgaccact caagtaatta tgggacccta atgcacgtga ccacatcgtt 1800 ttgccacttc gagaatcacc ctcgattatt atactgatag gtctctccgg ccgcgcagcg 1860 gcatctctcc cgaaatagtc atttgcccaa tcttgcatct cgacaggcac gttagtgaac 1920 gacgagagtg gaaacggagg aacccaaggt tctggagcct ttgcgaaaat acgctctaaa 1980 tttgacctaa tgttatgatg ttgaagcacg aaatctttgg gttgttcctc ccttaatata 2040 ttgagtgctt ccatgacaga tcctgcgttg agaaccttgg cgtacgtgtc gttggcagat 2100 tgctgacctc ctctagttga tctgccatcg atctggaaaa ctccatgatc aacgaagtct 2160 ccgtcttttt ccacgtatga tttgacatct gacgagctct tagctccctg tatgtttgga 2220 tggaaatgtg ctgacctact tggggagacg aggtcgaaga acttgttatt tttgcagttg 2280 tattttcctt cgaattggat gagcacgtgg agatgaggtt gcccatcttc gtgtagttct 2340 ctcgagacac gaatgaataa tttattagtt ggtgtgttta gggctaataa ttgggaaagt 2400 gcttcttctt tggaaagaga acagtgtgga tatgtcagaa aataattttt ggaatttact 2460 cggaaatgtc tgggcggtgg catatttgta ataatagttg ggcaccgatt ggggaacacg 2520 aaacttgctc tagcaattgg ggactggggt cctatatata ctagaaccct ctatagaact 2580 ttcaatctcg ttcacacacg tggcggccat cctatataat att 2623 //